BAC Information

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BAC

Clone NameB6Ng01-289J21
Chromosome18 (Build37)
Map Location 44,383,652 - 44,547,717
singlet/doubletdoublet
Overlap geneNpy6r, Myot, Dcp2
Upstream geneStk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11
Downstream geneMcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289J21.bB6Ng01-289J21.g
ACCGA086964GA086965
length1,1421,073
definitionB6Ng01-289J21.b B6Ng01-289J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,546,567 - 44,547,717)(44,383,652 - 44,384,737)
sequence
gaattctacaatgttcagttcagactaatagatagactccactatgagac
ctagaggagatcagagaagaagccattagatataatctctgaaacgatgt
gggccccagacctccttaaacactcaccccaacactggctctttatattc
tgattaaaaccctttcttctatgtacaagagttaaagaagtggtggcaag
aattttaactcagtgctgtgaatttgggggcccaagaatccagttgtttt
gcaagtcattacatctggggacataggagaatccctctgccttggttcac
tgttaactgtggctctttgaggaaagcctctaagccctggacagagaatg
atgatttccatgttatcactgcaagaccctgaagttaagctttcagttcc
tattggccctgcactaggtctcatgtaacagagcagacaagttccagact
ctaatgtctcagagcagactatagaaccctgctaaactttaaattctgcc
accttagtactacatcctaaccccaaggtctctctggagcaatccatgtg
gaggttaagaccctacctgtggggctagatctgacccacatggttttcca
tgctcccaagggaggccacccggtggttcccagatagaggatgcaaacct
tcagggttgtgagagtcagcctcaggtaagcacaggccacaggcgcctcc
ctccctggtaaacgcacagtaacctcaaaggcagaaactaattgctctcg
ccagggtttccagcagaagcagaatgacaatatttacataacttagcctg
tgctctctgcctgaacaggaactcactgccatctgaagggaaacggaaca
ctccctgccctaaatgcgacaattaaatgtgctgtggtggtctgaatgaa
aatgtcctccatggcctcagatatttaatacttggtctttgttggcatgg
tttacgagatttggtgtgaccttgctggaagagtatgtcactggagcagt
gtgccatttcagtagctctttcactgctacactgccacatccacttcatc
ataacgaataacccctggtggaacagtaccaccaagaaaccaattcttct
attaaattgccttataaatgttcttttataaactataagaaa
gaattcttttaaatgcagatatccagttataccagcactattccagcaca
ttgtgtatttttggcttcttcaggtatctgtaggtatgcaggcttttgat
tctgggtattttattcgatttcattgattatcatgtctgctttatgctac
tacctgcagtttcattttttttcagctctgtagtagagcttgaaatcatg
gatggtgatacatccagatgttctttcattattccagattgctttagctg
tatttggttctttctttttccatatgaagttaaataatatcctttcaata
gacatataaatatttcattttgatttttaaaagttatgccatatttatat
gaattacatgataaatatgaaacaaaactcacatttcattacttgtacag
tttcatttttcactgtatcaataaattaataccaaatttaaaaatattaa
aagattaaaaataattaaaattgacactgtttgggtaaagcccgagaagt
aatgacaacataagtaaaaagagggaatataagggattatgggtagagta
tgcttaacaggtaatatataccttaagtaaattgtccatacacaatacag
caccatatataaagagtatacattctgaaaacatttaaaaatttaacatt
gagcccttccggtcggcgccagcaccgggtctccttgggcgcagagttgg
tggacactcccccccccccaggtccctagaggactctccacatgatctta
ggaccacgggtgagtagaacacaacttctgttccattccaatcgcgtggg
acctgagacagcattagggaagcactttgggcttggagtcggcagatacc
tcccctcctccccaaggtctctagaggactctccacgtgatcttaggacc
atggtgagtggaactcaacttctgttccattccatcgcatgggaccagca
ttagggaaacagaaacctgtctgaccaggtcacagtccctctggtcgcac
agcacgggtcaactggcgagagtcagaagacccctccagtccttagagga
acggcttctgagccgaccccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44546567_44547717
seq2: B6Ng01-289J21.b_43_1184 (reverse)

seq1  TTTCTTATAATTTATAGAAG-ACATTTATA--GCAATTT-ATAGAAGAAA  46
      ||||||||| |||||| ||| |||||||||  ||||||| ||||||||| 
seq2  TTTCTTATAGTTTATAAAAGAACATTTATAAGGCAATTTAATAGAAGAA-  49

seq1  TTTGGTTTCTTTGGTGTACTGTTCCA-CAGGGGTAATCGTTTATGATGAA  95
       |||||||||| |  ||||||||||| ||||||| ||   ||||||||||
seq2  -TTGGTTTCTTGGTGGTACTGTTCCACCAGGGGTTATTCGTTATGATGAA  98

seq1  GTGGATGTGGCAGGTGGTAGGCAGTTGAAAGAGCTAACTTGAAATGGCAC  145
      |||||||||||||   ||| |||| |||||||||||   |||||||||||
seq2  GTGGATGTGGCAG--TGTA-GCAG-TGAAAGAGCTA--CTGAAATGGCAC  142

seq1  AACCTGCTCCCAGTGACATACTTCTTCCAGCAAGGTCACACCAAATCTCC  195
      |  ||||| |||||||||||| |||||||||||||||||||||||||| |
seq2  A--CTGCT-CCAGTGACATAC-TCTTCCAGCAAGGTCACACCAAATCT-C  187

seq1  TTAAACCATGCCAACAAAGACCAAGTATTAAATATCTGAGGCCATGGAGG  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCATGCCAACAAAGACCAAGTATTAAATATCTGAGGCCATGGAGG  237

seq1  ACATTTTCATTCAGACCACCACAGCACATTTAATTGTCGCATTTAGGGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCATTCAGACCACCACAGCACATTTAATTGTCGCATTTAGGGCA  287

seq1  GGGAGTGTTCCGTTTCCCTTCAGATGGCAGTGAGTTCCTGTTCAGGCAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTTCCGTTTCCCTTCAGATGGCAGTGAGTTCCTGTTCAGGCAGA  337

seq1  GAGCACAGGCTAAGTTATGTAAATATTGTCATTCTGCTTCCTGCTGGAAA  395
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGCACAGGCTAAGTTATGTAAATATTGTCATTCTGCTT-CTGCTGGAAA  386

seq1  CCCTGGCGAGAGCAATTAGTTTCTGCCTTTGAGGTTACTGTGCGTTTACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCGAGAGCAATTAGTTTCTGCCTTTGAGGTTACTGTGCGTTTACC  436

seq1  AGGGAGGGAGGCGCCTGTGGCCTGTGCTTACCTGAGGCTGACTCTCACAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAGGCGCCTGTGGCCTGTGCTTACCTGAGGCTGACTCTCACAA  486

seq1  CCCTGAAGGTTTGCATCCTCTATCTGGGAACCACCGGGTGGCCTCCCTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGGTTTGCATCCTCTATCTGGGAACCACCGGGTGGCCTCCCTTG  536

seq1  GGAGCATGGAAAACCATGTGGGTCAGATCTAGCCCCACAGGTAGGGTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGAAAACCATGTGGGTCAGATCTAGCCCCACAGGTAGGGTCTT  586

seq1  AACCTCCACATGGATTGCTCCAGAGAGACCTTGGGGTTAGGATGTAGTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCACATGGATTGCTCCAGAGAGACCTTGGGGTTAGGATGTAGTAC  636

seq1  TAAGGTGGCAGAATTTAAAGTTTAGCAGGGTTCTATAGTCTGCTCTGAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGCAGAATTTAAAGTTTAGCAGGGTTCTATAGTCTGCTCTGAGA  686

seq1  CATTAGAGTCTGGAACTTGTCTGCTCTGTTACATGAGACCTAGTGCAGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAGTCTGGAACTTGTCTGCTCTGTTACATGAGACCTAGTGCAGGG  736

seq1  CCAATAGGAACTGAAAGCTTAACTTCAGGGTCTTGCAGTGATAACATGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGGAACTGAAAGCTTAACTTCAGGGTCTTGCAGTGATAACATGGA  786

seq1  AATCATCATTCTCTGTCCAGGGCTTAGAGGCTTTCCTCAAAGAGCCACAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCATTCTCTGTCCAGGGCTTAGAGGCTTTCCTCAAAGAGCCACAG  836

seq1  TTAACAGTGAACCAAGGCAGAGGGATTCTCCTATGTCCCCAGATGTAATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGAACCAAGGCAGAGGGATTCTCCTATGTCCCCAGATGTAATG  886

seq1  ACTTGCAAAACAACTGGATTCTTGGGCCCCCAAATTCACAGCACTGAGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAAACAACTGGATTCTTGGGCCCCCAAATTCACAGCACTGAGTT  936

seq1  AAAATTCTTGCCACCACTTCTTTAACTCTTGTACATAGAAGAAAGGGTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTGCCACCACTTCTTTAACTCTTGTACATAGAAGAAAGGGTTT  986

seq1  TAATCAGAATATAAAGAGCCAGTGTTGGGGTGAGTGTTTAAGGAGGTCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGAATATAAAGAGCCAGTGTTGGGGTGAGTGTTTAAGGAGGTCTG  1036

seq1  GGGCCCACATCGTTTCAGAGATTATATCTAATGGCTTCTTCTCTGATCTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCACATCGTTTCAGAGATTATATCTAATGGCTTCTTCTCTGATCTC  1086

seq1  CTCTAGGTCTCATAGTGGAGTCTATCTATTAGTCTGAACTGAACATTGTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTCTCATAGTGGAGTCTATCTATTAGTCTGAACTGAACATTGTA  1136

seq1  GAATTC  1151
      ||||||
seq2  GAATTC  1142

seq1: chr18_44383652_44384737
seq2: B6Ng01-289J21.g_65_1137

seq1  GAATTCTTTTAAATGCAGATATCCAGTTATACCAGCACTATTCCAGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAATGCAGATATCCAGTTATACCAGCACTATTCCAGCACA  50

seq1  TTGTGTATTTTTGGCTTCTTCAGGTATCTGTAGGTATGCAGGCTTTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTTTTGGCTTCTTCAGGTATCTGTAGGTATGCAGGCTTTTGAT  100

seq1  TCTGGGTATTTTATTCGATTTCATTGATTATCATGTCTGCTTTATGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTATTTTATTCGATTTCATTGATTATCATGTCTGCTTTATGCTAC  150

seq1  TACCTGCAGTTTCATTTTTTTTCAGCTCTGTAGTAGAGCTTGAAATCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCAGTTTCATTTTTTTTCAGCTCTGTAGTAGAGCTTGAAATCATG  200

seq1  GATGGTGATACATCCAGATGTTCTTTCATTATTCCAGATTGCTTTAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGATACATCCAGATGTTCTTTCATTATTCCAGATTGCTTTAGCTG  250

seq1  TATTTGGTTCTTTCTTTTTCCATATGAAGTTAAATAATATCCTTTCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTTCTTTCTTTTTCCATATGAAGTTAAATAATATCCTTTCAATA  300

seq1  GACATATAAATATTTCATTTTGATTTTTAAAAGTTATGCCATATTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATAAATATTTCATTTTGATTTTTAAAAGTTATGCCATATTTATAT  350

seq1  GAATTACATGATAAATATGAAACAAAACTCACATTTCATTACTTGTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACATGATAAATATGAAACAAAACTCACATTTCATTACTTGTACAG  400

seq1  TTTCATTTTTCACTGTATCAATAAATTAATACCAAATTTAAAAATATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTCACTGTATCAATAAATTAATACCAAATTTAAAAATATTAA  450

seq1  AAGATTAAAAATAATTAAAATTGACACTGTTTGGGTAAAGCCCGAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAAAATAATTAAAATTGACACTGTTTGGGTAAAGCCCGAGAAGT  500

seq1  AATGACAACATAAGTAAAAAGAGGGAATATAAGGGATTATGGGTAGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAACATAAGTAAAAAGAGGGAATATAAGGGATTATGGGTAGAGTA  550

seq1  TGCTTAACAGGTAATATATACCTTAAGTAAATTGTCCATACACAATACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACAGGTAATATATACCTTAAGTAAATTGTCCATACACAATACAG  600

seq1  CACCATATATAAAGAGTATACATTCTGAAAACATTTAAAAATTTAACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATATAAAGAGTATACATTCTGAAAACATTTAAAAATTTAACATT  650

seq1  GAGCCCTTCCGGTCGGCGCCAGCACCGGGTCTCCTTGGGCGCAGAGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTCCGGTCGGCGCCAGCACCGGGTCTCCTTGGGCGCAGAGTTGG  700

seq1  TGGACACTCCCCCCCCCCCAGGTCCCTAGAGGACTCTCCACATGATCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTCCCCCCCCCCCAGGTCCCTAGAGGACTCTCCACATGATCTTA  750

seq1  GGACCACGGGTGAGTAGAACACAACTTCTGTTCCATTCCAATCGCGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACGGGTGAGTAGAACACAACTTCTGTTCCATTCCAATCGCGTGGG  800

seq1  ACCTGAGACAGCATTAGGGAAGCACTTTGGGCTTGGAGTCGGCAGATACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGACAGCATTAGGGAAGCACTTTGGGCTTGGAGTCGGCAGATACC  850

seq1  TCCCCTCCTCCCCAAGGTCTCTAGAGGACTCTCCACGTGATCTTAGGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCTCCCCAAGGTCTCTAGAGGACTCTCCACGTGATCTTAGGACC  900

seq1  ATGGTGAGTGGAACTCAACTTCTGTTCCATTCCAATCGCATGGGACCAGC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGGTGAGTGGAACTCAACTTCTGTTCCATTCC-ATCGCATGGGACCAGC  949

seq1  ATTAGGGAAACAGAAAACCTGGCCTGACCAGGGTCACAAGTCCCTTCTGG  1000
      ||||||||||||| |||||| | ||||||| |||||| |||||| |||||
seq2  ATTAGGGAAACAG-AAACCT-GTCTGACCA-GGTCAC-AGTCCC-TCTGG  994

seq1  TCGGCACCAGCACCGGGTCAACTGGGCGAAGAGTCAGAAGACACCCCCAA  1050
      || ||| ||||| |||||||||| |||| ||||||||||||| || ||| 
seq2  TC-GCA-CAGCA-CGGGTCAACT-GGCG-AGAGTCAGAAGACCCCTCCA-  1038

seq1  GGTCCCTAGAGG-ACAGCTTCTGAGGCAGACCCCATT  1086
       |||| |||||| || |||||||| || |||||||||
seq2  -GTCCTTAGAGGAACGGCTTCTGA-GCCGACCCCATT  1073