BAC Information

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BAC

Clone NameB6Ng01-289K24
Chromosome18 (Build37)
Map Location 26,034,309 - 26,184,564
singlet/doubletdoublet
Overlap geneLOC100041274
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289K24.bB6Ng01-289K24.g
ACCGA087018GA087019
length1,1351,117
definitionB6Ng01-289K24.b B6Ng01-289K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,183,419 - 26,184,564)(26,034,309 - 26,035,444)
sequence
gaattctcatactcctacgatttgcatgacaaatgatcttacaagtctgt
ggagatggtaccatgtggcaggcagtagacagagatccagcaagaatatt
aataccctgactataccacagctttaaaaaacttctatcgatgatagtga
aaaatcaaacaagatagtatctatcactttttccaaaggtgatccacacg
atgtgttagaactgctacgcagacacaagctcagtactgtagatctatgc
tgttgtgaacaaacttagtctgcctggatgctcaagggtacatatctgca
ttctgtattttccgtctaaagtcatctaagatcaacacttctgaaagtgc
gtatttaggagctatttcattaacagggaagattttcgctgatccacagt
gtcaaacatgaatccttggttctctctttttttttttttttttttttgca
gtgaaatgactgagactgcatatttaccaattaataaaaaatatccatca
ccctaaagttctcccttctataattctttcagttacaagtggtactagta
tcctttgaaggtagatgaagtacctatgactagttctagttatcaaaaat
taagcttctgctggagtagccattttacccagtttttgctgaaaactttc
ccattatatagtccccagcaagccaactaacccaaaagattcatcaacaa
acaagaaaaatgtacacactgcccacctagaatgtacataagccaagtcc
ctacagaacttttaagtccaagcactgttataaatgtaatggacactttt
tgctcctcatctctcaagaaaaatgtcagtattatgtacttgaatgacaa
aatttattctaaagaagtcacaatatatcctgccaatgtatgaattcatt
atttttccttaatatgctggtgaagtcctactccactttatcattgcatt
cctattctggctttcatgtcatttgtttctgtttatgtaaactcgaagaa
gcttcaagattgtctttagagctcctctactgctcatcaggacagcccat
acatttccatgtgacctaaatgaacatcatcacatacatacactagtatc
ttgtatctattcctccacctacatttcttctaaaa
gaattctttatatatattggatattagaccccctatcggatttaggatag
gtaaaggtcttttccaaatctgttggttgccattttgtcttattgacggt
gtcctttgccttgcagaagttttatgaggtcccatttgtctaaagtgatt
aagttttgaattttatttctgcagttgataggatgtctagtatcacctga
ctccacagctacttacatggaaacatctaaagtactaggaaaggctattt
gttaatataagcagtggttagtagaactataatacagaccacaaggaaga
gccttgtgaaatttaacgtttttctggtaaaaccattgacaatgtaaaaa
gaaacaggtgaaactaattttattaaactttcaaatgtaatttcatatag
ctaaatcattctagcttcagcataacatcactttgatttttatcagcaag
atttttttcttaccattctagaactgctatgtttatttgtattgtactta
acacaaattataattgggactagttgcagaatttcaatatagagagaaca
tgtgtttccaagatatagtttacattgaatatcagaccatctaaaaggag
gaagaatagaatagagttcctggtaaggggtggcaaaaataaagattgag
aatagaaatgaaggccacacactctgggtattaaggagcctcgaggttag
gacagactagaagaacatggtgaaatggcctttgggtgttgcacagtatc
tttctatcagagaccaagctttgaatacccctaaaagaaagtctcttacc
aaagaggacaacagcttactcaaaataagtatgaaataagaccacagaca
ggctggggatatgtgacaatcacatgataactctaagaagctcaggaata
ggagccgtcaaggtcatccatctactgtagagatttgtcctaggataaag
ctggatagagattccctccatctattggaatgagattgccaatatttcaa
gtgactcaatacttcagcttgtttgttttaaatcagcatgcgtcatatga
gtatgcactttacatatatatttcttggattctacttgcagaaatgttct
tcattgcagcaccagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_26183419_26184564
seq2: B6Ng01-289K24.b_49_1183 (reverse)

seq1  TTTTATGAAGAAAATGTA-GTTGAAGAATAGGAATTACAAGATAATTTAG  49
      ||||| |||| ||||||| || || ||||||    |||||||||   |||
seq2  TTTTA-GAAG-AAATGTAGGTGGAGGAATAG---ATACAAGATA--CTAG  43

seq1  TTGTATGTATGTTGATGAATGTCATTTAGGTCACATTGGAAAATGTATGG  99
       |||||||||| ||||||   |||||||||||||||  | ||||||||||
seq2  -TGTATGTATG-TGATGATGTTCATTTAGGTCACAT--GGAAATGTATGG  89

seq1  GCTGTTCCTGATGAGCAGTAGA-GAGCTCTAAAGACAATCTTGAAGC-TC  147
      |||| ||||||||||||||||| |||||||||||||||||||||||| ||
seq2  GCTG-TCCTGATGAGCAGTAGAGGAGCTCTAAAGACAATCTTGAAGCTTC  138

seq1  TTCGAGTTTACAATAAACAGAAACAAATGACAATGAAAAGCCAGAATAGG  197
      ||||||||||| ||||||||||||||||||| ||| ||||||||||||||
seq2  TTCGAGTTTAC-ATAAACAGAAACAAATGAC-ATG-AAAGCCAGAATAGG  185

seq1  AATGCAATGATAAAGTGGAGTAAGACTTCA-CAGCATATTAAGGAAAAAT  246
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  AATGCAATGATAAAGTGGAGTAGGACTTCACCAGCATATTAAGGAAAAAT  235

seq1  AATGAATTCATACATTGGCAGGATATATTGTGACTTCTTTAGAATTAATT  296
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATGAATTCATACATTGGCAGGATATATTGTGACTTCTTTAGAATAAATT  285

seq1  TTGTCATTCAAGTACATAATACTGACATTTTTCTTGAGAGATGAGGAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTCAAGTACATAATACTGACATTTTTCTTGAGAGATGAGGAGCA  335

seq1  AAAAGTGTCCATTACATTTATAACAGTGCTTGGACTTAAAAGTTCTGTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTCCATTACATTTATAACAGTGCTTGGACTTAAAAGTTCTGTAG  385

seq1  GGACTTGGCTTATGTACATTCTAGGTGGGCAGTGTGTACATTTTTCTTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGCTTATGTACATTCTAGGTGGGCAGTGTGTACATTTTTCTTGT  435

seq1  TTGTTGATGAATCTTTTGGGTTAGTTGGCTTGCTGGGGACTATATAATGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATGAATCTTTTGGGTTAGTTGGCTTGCTGGGGACTATATAATGG  485

seq1  GAAAGTTTTCAGCAAAAACTGGGTAAAATGGCTACTCCAGCAGAAGCTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTTCAGCAAAAACTGGGTAAAATGGCTACTCCAGCAGAAGCTTA  535

seq1  ATTTTTGATAACTAGAACTAGTCATAGGTACTTCATCTACCTTCAAAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGATAACTAGAACTAGTCATAGGTACTTCATCTACCTTCAAAGGA  585

seq1  TACTAGTACCACTTGTAACTGAAAGAATTATAGAAGGGAGAACTTTAGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTACCACTTGTAACTGAAAGAATTATAGAAGGGAGAACTTTAGGG  635

seq1  TGATGGATATTTTTTATTAATTGGTAAATATGCAGTCTCAGTCATTTCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATATTTTTTATTAATTGGTAAATATGCAGTCTCAGTCATTTCAC  685

seq1  TGCAAAAAAAAAAAAAAAAAAAAAGAGAGAACCAAGGATTCATGTTTGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAAAAAAAAAAAAAAAAAGAGAGAACCAAGGATTCATGTTTGAC  735

seq1  ACTGTGGATCAGCGAAAATCTTCCCTGTTAATGAAATAGCTCCTAAATAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGATCAGCGAAAATCTTCCCTGTTAATGAAATAGCTCCTAAATAC  785

seq1  GCACTTTCAGAAGTGTTGATCTTAGATGACTTTAGACGGAAAATACAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCAGAAGTGTTGATCTTAGATGACTTTAGACGGAAAATACAGAA  835

seq1  TGCAGATATGTACCCTTGAGCATCCAGGCAGACTAAGTTTGTTCACAACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATATGTACCCTTGAGCATCCAGGCAGACTAAGTTTGTTCACAACA  885

seq1  GCATAGATCTACAGTACTGAGCTTGTGTCTGCGTAGCAGTTCTAACACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATCTACAGTACTGAGCTTGTGTCTGCGTAGCAGTTCTAACACAT  935

seq1  CGTGTGGATCACCTTTGGAAAAAGTGATAGATACTATCTTGTTTGATTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGATCACCTTTGGAAAAAGTGATAGATACTATCTTGTTTGATTTT  985

seq1  TCACTATCATCGATAGAAGTTTTTTAAAGCTGTGGTATAGTCAGGGTATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCATCGATAGAAGTTTTTTAAAGCTGTGGTATAGTCAGGGTATT  1035

seq1  AATATTCTTGCTGGATCTCTGTCTACTGCCTGCCACATGGTACCATCTCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTTGCTGGATCTCTGTCTACTGCCTGCCACATGGTACCATCTCC  1085

seq1  ACAGACTTGTAAGATCATTTGTCATGCAAATCGTAGGAGTATGAGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTGTAAGATCATTTGTCATGCAAATCGTAGGAGTATGAGAATTC  1135

seq1: chr18_26034309_26035444
seq2: B6Ng01-289K24.g_66_1182

seq1  GAATTCTTTATATATATTGGATATTAGACCCCCTATCGGATTTAGGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATATATTGGATATTAGACCCCCTATCGGATTTAGGATAG  50

seq1  GTAAAGGTCTTTTCCAAATCTGTTGGTTGCCATTTTGTCTTATTGACGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTCTTTTCCAAATCTGTTGGTTGCCATTTTGTCTTATTGACGGT  100

seq1  GTCCTTTGCCTTGCAGAAGTTTTATGAGGTCCCATTTGTCTAAAGTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGCCTTGCAGAAGTTTTATGAGGTCCCATTTGTCTAAAGTGATT  150

seq1  AAGTTTTGAATTTTATTTCTGCAGTTGATAGGATGTCTAGTATCACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGAATTTTATTTCTGCAGTTGATAGGATGTCTAGTATCACCTGA  200

seq1  CTCCACAGCTACTTACATGGAAACATCTAAAGTACTAGGAAAGGCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGCTACTTACATGGAAACATCTAAAGTACTAGGAAAGGCTATTT  250

seq1  GTTAATATAAGCAGTGGTTAGTAGAACTATAATACAGACCACAAGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATAAGCAGTGGTTAGTAGAACTATAATACAGACCACAAGGAAGA  300

seq1  GCCTTGTGAAATTTAACGTTTTTCTGGTAAAACCATTGACAATGTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGAAATTTAACGTTTTTCTGGTAAAACCATTGACAATGTAAAAA  350

seq1  GAAACAGGTGAAACTAATTTTATTAAACTTTCAAATGTAATTTCATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTGAAACTAATTTTATTAAACTTTCAAATGTAATTTCATATAG  400

seq1  CTAAATCATTCTAGCTTCAGCATAACATCACTTTGATTTTTATCAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCATTCTAGCTTCAGCATAACATCACTTTGATTTTTATCAGCAAG  450

seq1  ATTTTTTTCTTACCATTCTAGAACTGCTATGTTTATTTGTATTGTACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTTACCATTCTAGAACTGCTATGTTTATTTGTATTGTACTTA  500

seq1  ACACAAATTATAATTGGGACTAGTTGCAGAATTTCAATATAGAGAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTATAATTGGGACTAGTTGCAGAATTTCAATATAGAGAGAACA  550

seq1  TGTGTTTCCAAGATATAGTTTACATTGAATATCAGACCATCTAAAAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCCAAGATATAGTTTACATTGAATATCAGACCATCTAAAAGGAG  600

seq1  GAAGAATAGAATAGAGTTCCTGGTAAGGGGTGGCAAAAATAAAGATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATAGAATAGAGTTCCTGGTAAGGGGTGGCAAAAATAAAGATTGAG  650

seq1  AATAGAAATGAAGGCCACACACTCTGGGTATTAAGGAGCCTCGAGGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATGAAGGCCACACACTCTGGGTATTAAGGAGCCTCGAGGTTAG  700

seq1  GACAGACTAGAAGAACATGGTGAAATGGCCTTTGGGTGTTGCACAGTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTAGAAGAACATGGTGAAATGGCCTTTGGGTGTTGCACAGTATC  750

seq1  TTTCTATCAGAGACCAAGCTTTGAATACCCCTAAAAGAAAGTCTCTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCAGAGACCAAGCTTTGAATACCCCTAAAAGAAAGTCTCTTACC  800

seq1  AAAGAGGACAACAGCTTACTCAAAATAAGTATGAAATAAGACCACAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGACAACAGCTTACTCAAAATAAGTATGAAATAAGACCACAGACA  850

seq1  GGCTGGGGATATGTGACAATCACATGATAACTCTAAGAAGCTCAGGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  GGCTGGGGATATGTGACAATCACATGATAACTCTAAGAAGCTCAGG--AA  898

seq1  TAGGAGCCGTCAAGGTCATCCATCTACTGTAGAGATTTGTCCTAGGAATA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGGAGCCGTCAAGGTCATCCATCTACTGTAGAGATTTGTCCTAGG-ATA  947

seq1  AAGCTGGATAGAGATTCCCTCCAATCTTATTTGGAATGAGATTGCCAAAT  1000
      |||||||||||||||||||||| ||||   |||||||||||||||| |||
seq2  AAGCTGGATAGAGATTCCCTCC-ATCT--ATTGGAATGAGATTGCC-AAT  993

seq1  ATTTTCAAAGTGACTTCAATACTTCAAGCTTGTTTTGTTTTAAAATCAGC  1050
      ||||   ||||||| |||||||||| |||||| |||||||| ||||||||
seq2  ATTT--CAAGTGAC-TCAATACTTC-AGCTTG-TTTGTTTT-AAATCAGC  1037

seq1  ATGCGTCCATATGAACCTATGCAACCTTACATATATATTCTCTGGGTTCT  1100
      |||||| |||||||   ||||| || |||||||||||||   ||| ||||
seq2  ATGCGT-CATATGA--GTATGC-ACTTTACATATATATTTCTTGGATTCT  1083

seq1  ACTTGCA-AGATGTTCTTTCATTTGCAGCACACAGAC  1136
      ||||||| | |||||| |||| ||||||||| |||||
seq2  ACTTGCAGAAATGTTC-TTCA-TTGCAGCAC-CAGAC  1117