BAC Information

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BAC

Clone NameB6Ng01-289N20
Chromosome18 (Build37)
Map Location 38,096,246 - 38,255,024
singlet/doubletdoublet
Overlap geneHdac3, 4631403P03Rik, Fchsd1, Centd3
Upstream genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1
Downstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289N20.bB6Ng01-289N20.g
ACCGA087149GA087150
length1,1691,145
definitionB6Ng01-289N20.b B6Ng01-289N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,096,246 - 38,097,426)(38,253,867 - 38,255,024)
sequence
gaattccaatgctgagtgaaaagacagtgagctacctgtcactcctttct
tgtaccactgacaacacccacagttaccatgcccgactggagactcctcc
aggaaggggtctgtgcatggtacacacaggatccagcttgttcctcagtc
agtctgtgagcagttgcttacatccaacagagccaagcacttactgggtt
ttatctcaggacatctttaccagctaacatcctcatctcaaacacccatg
ctcacatacctgaagacatctttacccttctcaggtcagtaatctaactc
ttcagcagaaatgtcccattaattccccatttgaggaaactaatccatgg
tgaatacacacatggcctaactaataaagtactgagtgaatggtaacaat
tttattatacacatcatcatctgtttccttttcacatcatacatcggtaa
ctagcaagaattaaaatcccagaaaggtacaaaaaaaaaaaaaaaaccaa
ttggtttattagatccaaaacagtaaaatggacataaagccagttagagc
ttcacaccctctcctccttgccactgtacttcatctgcagttaaggtttc
agagagccacgccttcctcccctcaggttcaccttgcatggaagcaagaa
ctgtagtaggggaacccagaaggaagtcagaggtgactttagtaccgtcc
aaactttcatctctaacagtctctgtgttggaaggacagaaggaacaaat
gaggggaagaggggctgaggacagttgctggggctcattacccataacgt
tccagagacctgtccatgtctcatccctgagagggacaatcatcaggccg
tgagagtttgagggaaaggggagttaatttctagaaccacatatggtttc
ccaaacccttccaccagagttagtaaacaccctgggggtacccagtttca
gacctggggaaccatactttccttcccaccacagagtgacaggactcttg
gggaccacagcatccatgctgctctaaatctccacatcacttcctggtcg
tgtcatgtcgccatcatagaacttcaatgggtgctctgctgtaaacagga
cagagatagaaacccactctcagtccgactctccagatccttcctcagag
cccacttttctctatggga
gaattccaggtccccttgggttatagacatcactatataaacacagtggt
ccctaaaggagaccactcaaacaaaacaacagccacaagctacccaggga
gagcagagagggagtggcctggcactgccagggggaaggcctggcaagaa
gcacaacagggagacatctgagccacatgaagaaggggacatgcaaaggg
ggaaggccctaagagctcagccatggcctctcacactcatgtatggcaaa
gtcgtgggctgccttctgacccatctgtcaacatcgtgtgctgccttctg
acccatccctttcacccatcacgttcaccacacactatcccatctcttat
ccacagggcccctttcggggtccccttcattacacctacatatctgccac
tctgcatgctttcttcccaggactcctgacaaatatcatcacatccaggg
ctgctttgaccccacccacgtcctcatgaggccacctggagttctggcct
ggaaggctgaggttctctgccaaaacctaggactctgtctccattcccac
tcactccttcttctgggtccccatcagcccatccccttgcatcattgtgt
tctgcagccagccgcctggaagctgaatcagagccacagaactaacattt
tgcacacacgtctctccagatgacaggcaagatgggccttctgccctcag
cccacacacacccgtgctcaggaagcacagagagccagggctgcacccca
cattgaggaagaagagatatgggtggaggagagccccttccctctttgga
tagcaggccctggcctttgccctttggtcttttttgttcaaagcttagga
tccaacttttagagagcaagagaaaaaaaaatccatgtcggatgtagcaa
gacacagcgtagactggtaagagaggccactgggtttatatgcaggatgg
atcagaggcatgacaggaaacaggaaggagaggcacgcctagaggcccaa
atggctgagtcatgagctggatcagagacagatgtgcaagatagaacaag
aagaggaacaacgagaaaagaacaggttgagtcagtaggagataagagaa
cctgagccagatggtgccagtcagatgaggaaaagctgtcaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38096246_38097426
seq2: B6Ng01-289N20.b_50_1218

seq1  GAATTCCAATGCTGAGTGAAAAGACAGTGAGCTACCTGTCACTCCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGCTGAGTGAAAAGACAGTGAGCTACCTGTCACTCCTTTCT  50

seq1  TGTACCACTGACAACACCCACAGTTACCATGCCCGACTGGAGACTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACTGACAACACCCACAGTTACCATGCCCGACTGGAGACTCCTCC  100

seq1  AGGAAGGGGTCTGTGCATGGTACACACAGGATCCAGCTTGTTCCTCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGGTCTGTGCATGGTACACACAGGATCCAGCTTGTTCCTCAGTC  150

seq1  AGTCTGTGAGCAGTTGCTTACATCCAACAGAGCCAAGCACTTACTGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGAGCAGTTGCTTACATCCAACAGAGCCAAGCACTTACTGGGTT  200

seq1  TTATCTCAGGACATCTTTACCAGCTAACATCCTCATCTCAAACACCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGGACATCTTTACCAGCTAACATCCTCATCTCAAACACCCATG  250

seq1  CTCACATACCTGAAGACATCTTTACCCTTCTCAGGTCAGTAATCTAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATACCTGAAGACATCTTTACCCTTCTCAGGTCAGTAATCTAACTC  300

seq1  TTCAGCAGAAATGTCCCATTAATTCCCCATTTGAGGAAACTAATCCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGAAATGTCCCATTAATTCCCCATTTGAGGAAACTAATCCATGG  350

seq1  TGAATACACACATGGCCTAACTAATAAAGTACTGAGTGAATGGTAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACACACATGGCCTAACTAATAAAGTACTGAGTGAATGGTAACAAT  400

seq1  TTTATTATACACATCATCATCTGTTTCCTTTTCACATCATACATCGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATACACATCATCATCTGTTTCCTTTTCACATCATACATCGGTAA  450

seq1  CTAGCAAGAATTAAAATCCCAGAAAGGTACAAAAAAAAAAAAAAAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGAATTAAAATCCCAGAAAGGTACAAAAAAAAAAAAAAAACCAA  500

seq1  TTGGTTTATTAGATCCAAAACAGTAAAATGGACATAAAGCCAGTTAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTATTAGATCCAAAACAGTAAAATGGACATAAAGCCAGTTAGAGC  550

seq1  TTCACACCCTCTCCTCCTTGCCACTGTACTTCATCTGCAGTTAAGGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCCTCTCCTCCTTGCCACTGTACTTCATCTGCAGTTAAGGTTTC  600

seq1  AGAGAGCCACGCCTTCCTCCCCTCAGGTTCACCTTGCATGGAAGCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCACGCCTTCCTCCCCTCAGGTTCACCTTGCATGGAAGCAAGAA  650

seq1  CTGTAGTAGGGGAACCCAGAAGGAAGTCAGAGGTGACTTTAGTACCGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTAGGGGAACCCAGAAGGAAGTCAGAGGTGACTTTAGTACCGTCC  700

seq1  AAACTTTCATCTCTAACAGTCTCTGTGTTGGAAGGACAGAAGGAACAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCATCTCTAACAGTCTCTGTGTTGGAAGGACAGAAGGAACAAAT  750

seq1  GAGGGGAAGAGGGGCTGAGGACAGTTGCTGGGGCTCATTACCCATAACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAGAGGGGCTGAGGACAGTTGCTGGGGCTCATTACCCATAACGT  800

seq1  TCCAGAGACCTGTCCATGTCTCATCCCTGAGAGGGACAATCATCAGGCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGACCTGTCCATGTCTCATCCCTGAGAGGGACAATCATCAGGCCG  850

seq1  TGAGAGTTTGAGGGAAAGGGGAGTTAA-TTCTAGAACCACATATGGTTT-  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TGAGAGTTTGAGGGAAAGGGGAGTTAATTTCTAGAACCACATATGGTTTC  900

seq1  CCAAACCCTT-CACCAGAGTTAGTAAACACCCTGGGGGTACCCAG-TTCA  946
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CCAAACCCTTCCACCAGAGTTAGTAAACACCCTGGGGGTACCCAGTTTCA  950

seq1  GACCTGGGGAAACCATACTTTCCTTCCCACCACAGAGGTGACAAGGAACT  996
      ||||||||| |||||||||||||||||||||||||| ||||||  | |||
seq2  GACCTGGGG-AACCATACTTTCCTTCCCACCACAGA-GTGACA--GGACT  996

seq1  CTTGGGGA-CACAGCATCCATGCTGCTCTAAATCTCCACATCACTTTCCT  1045
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGGGGACCACAGCATCCATGCTGCTCTAAATCTCCACATCAC-TTCCT  1045

seq1  TGTCGTTGTCATGGTCGCCATCATAGAAC-TCATTGGGTGCTTCTGGCCT  1094
       |||| |||||| |||||||||||||||| ||| ||||||| ||||  ||
seq2  GGTCG-TGTCAT-GTCGCCATCATAGAACTTCAATGGGTGC-TCTG--CT  1090

seq1  GTAAAACAAGGAACAAGAGATTAGAAACCCACTCTTCAAGTTCCAGACTC  1144
      |||||   ||||   ||||| ||||||||||||||   |||  | |||||
seq2  GTAAA--CAGGA--CAGAGA-TAGAAACCCACTCT--CAGT--CCGACTC  1131

seq1  CTCCCAGCACCCTCCTCAGAG-CCACTTT--TCTATGGGA  1181
         ||||  || ||||||||| |||||||  |||||||||
seq2  --TCCAGATCCTTCCTCAGAGCCCACTTTTCTCTATGGGA  1169

seq1: chr18_38253867_38255024
seq2: B6Ng01-289N20.g_69_1213 (reverse)

seq1  CTCCTGACAGCTTCTCCTCATCTGGGAACTTGCCACCATTCTGCTCAGTG  50
      ||||||||||||| ||||||||||   || || ||||||   ||||||  
seq2  CTCCTGACAGCTTTTCCTCATCTG---AC-TGGCACCATCTGGCTCAGGT  46

seq1  TCTCTTTTATCTCCTTCCTGACTCAA-CTG-TCTTTTCTCCCTTTGTCCC  98
      ||||  |||||||| | ||||||||| ||| ||||||||  | |||| ||
seq2  TCTC--TTATCTCC-TACTGACTCAACCTGTTCTTTTCT--CGTTGTTCC  91

seq1  TC-TCTTTGTCTATCTTTCCACATCCTTGTCTCTGATCCAGCTCATGACT  147
      || ||||  |||||| || ||||||  |||||||||||||||||||||||
seq2  TCTTCTTGTTCTATC-TTGCACATC--TGTCTCTGATCCAGCTCATGACT  138

seq1  CAGCCCATTTGGGCCTCTAGGCGTGCCTCTCCTTCCCTGTTTCCCTGTCA  197
      ||| |||||||||||||||||||||||||||||| ||||||| |||||||
seq2  CAG-CCATTTGGGCCTCTAGGCGTGCCTCTCCTT-CCTGTTT-CCTGTCA  185

seq1  TGCCTCTGATCCATCCTGCATATAAACCCAGTGGCCTCTCTTACCAGTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGATCCATCCTGCATATAAACCCAGTGGCCTCTCTTACCAGTCT  235

seq1  ACGCTGTGTCTTGCTACATCCGACATGGATTTTTTTTTTCTCTTGCTCTC  297
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACGCTGTGTCTTGCTACATCCGACATGGA-TTTTTTTTTCTCTTGCTCTC  284

seq1  TAAAAGTTGGATCCTAAGCTTTGAACAAAAAAGACCAAAGGGCAAAGGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTGGATCCTAAGCTTTGAACAAAAAAGACCAAAGGGCAAAGGCC  334

seq1  AGGGCCTGCTATCCAAAGAGGGAAGGGGCTCTCCTCCACCCATATCTCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTGCTATCCAAAGAGGGAAGGGGCTCTCCTCCACCCATATCTCTT  384

seq1  CTTCCTCAATGTGGGGTGCAGCCCTGGCTCTCTGTGCTTCCTGAGCACGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAATGTGGGGTGCAGCCCTGGCTCTCTGTGCTTCCTGAGCACGG  434

seq1  GTGTGTGTGGGCTGAGGGCAGAAGGCCCATCTTGCCTGTCATCTGGAGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGGGCTGAGGGCAGAAGGCCCATCTTGCCTGTCATCTGGAGAG  484

seq1  ACGTGTGTGCAAAATGTTAGTTCTGTGGCTCTGATTCAGCTTCCAGGCGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGTGCAAAATGTTAGTTCTGTGGCTCTGATTCAGCTTCCAGGCGG  534

seq1  CTGGCTGCAGAACACAATGATGCAAGGGGATGGGCTGATGGGGACCCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCAGAACACAATGATGCAAGGGGATGGGCTGATGGGGACCCAGA  584

seq1  AGAAGGAGTGAGTGGGAATGGAGACAGAGTCCTAGGTTTTGGCAGAGAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGTGAGTGGGAATGGAGACAGAGTCCTAGGTTTTGGCAGAGAAC  634

seq1  CTCAGCCTTCCAGGCCAGAACTCCAGGTGGCCTCATGAGGACGTGGGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTTCCAGGCCAGAACTCCAGGTGGCCTCATGAGGACGTGGGTGG  684

seq1  GGTCAAAGCAGCCCTGGATGTGATGATATTTGTCAGGAGTCCTGGGAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGCAGCCCTGGATGTGATGATATTTGTCAGGAGTCCTGGGAAGA  734

seq1  AAGCATGCAGAGTGGCAGATATGTAGGTGTAATGAAGGGGACCCCGAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCAGAGTGGCAGATATGTAGGTGTAATGAAGGGGACCCCGAAAG  784

seq1  GGGCCCTGTGGATAAGAGATGGGATAGTGTGTGGTGAACGTGATGGGTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTGGATAAGAGATGGGATAGTGTGTGGTGAACGTGATGGGTGA  834

seq1  AAGGGATGGGTCAGAAGGCAGCACACGATGTTGACAGATGGGTCAGAAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGGGTCAGAAGGCAGCACACGATGTTGACAGATGGGTCAGAAGG  884

seq1  CAGCCCACGACTTTGCCATACATGAGTGTGAGAGGCCATGGCTGAGCTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACGACTTTGCCATACATGAGTGTGAGAGGCCATGGCTGAGCTCT  934

seq1  TAGGGCCTTCCCCCTTTGCATGTCCCCTTCTTCATGTGGCTCAGATGTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCTTCCCCCTTTGCATGTCCCCTTCTTCATGTGGCTCAGATGTCT  984

seq1  CCCTGTTGTGCTTCTTGCCAGGCCTTCCCCCTGGCAGTGCCAGGCCACTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTGTGCTTCTTGCCAGGCCTTCCCCCTGGCAGTGCCAGGCCACTC  1034

seq1  CCTCTCTGCTCTCCCTGGGTAGCTTGTGGCTGTTGTTTTGTTTGAGTGGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCTCTCCCTGGGTAGCTTGTGGCTGTTGTTTTGTTTGAGTGGT  1084

seq1  CTCCTTTAGGGACCACTGTGTTTATATAGTGATGTCTATAACCCAAGGGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAGGGACCACTGTGTTTATATAGTGATGTCTATAACCCAAGGGG  1134

seq1  ACCTGGAATTC  1158
      |||||||||||
seq2  ACCTGGAATTC  1145