BAC Information

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BAC

Clone NameB6Ng01-290B22
Chromosome18 (Build37)
Map Location 89,183,986 - 89,185,125
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320, LOC620693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290B22.bB6Ng01-290B22.g
ACCGA087340GA087341
length1,1251,164
definitionB6Ng01-290B22.b B6Ng01-290B22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattttctgcttcatccaaaagttctgtatgaaatctctgcattt
ggtattcaagaatccaaaaatgaggtataatatgtttaaaaatatgaaca
aaagattactctaccaagtcaaagaaatgctctaataaaattgaacagct
tggtgagaacaaggaacatgtgcagttggtgtattcgttcagttctatta
ttatttatataaaaagatgttaaagaagatgagtgaatcaaaatacagaa
tgcgcttgatctcatcaaatcagatcaacattttacttatggttatcttt
tatatgtagggagctacagaatagttgttatttcagatttattgatgggg
gtaaagtaatagaaattagtaagggagcaaattcattagtaccagaacat
tgatgatatatggagagaggaacactttaagaaagagaagttgatttttc
accttttcagattttataaacaggtctgtgaggggacctggtgggacatc
tcatagcttggctgtgtctcttgttgagcaggtgaatgctgctgccaagg
ccattctgctgtatctgcttcagggacgattgatgatgacagctctgacc
tggaacaagtttatcgaatctctcgctcctgtcattccagtgctacaggt
actctgtgcaattcattttttatgatgccatttatctttggctgtctgtc
tgtgatttaaaagaatgcaaacagcagaactgtcatatcgtgagaaaaat
gaagtggcactgtgaaggcactggggataagtgagcaggaagtgtgtggc
tatcttgttcctggcagaaggttaaacagggatagcgaatttgcctgtgt
atgctttacatagcggggtgggaggtcagaaagtattgactgtgcaaaat
atagttcaaccttttgtaaagactttgagtcaaagccagtagtccttgtt
aacagacattgcataattagcttgcctcatgaattctatttgtgcatgta
tttaattagagtaagttgatatgagctgtaagtacaagacttttcttagc
agtctttttggcattgaatgagaagtttagattcaattccttggatggaa
agttagagagctgacccacaactta

gaattcctaagcagaaaaatcttgcaactcaaacacaaaagtaattttta
catggacataagcaatgctgtggactggcattgtttaggaccacagcatc
tttcactttcacacctcaaaggcaacacaaatccacacaattcaaaagat
cttaagaaatgttcatattatatgctgaactggctcatacctttagctgc
catttggccttagtcacacacataaaaatagtactccaagctcactgcag
actgtaacatgtatttcagctgaaagatggaggagatttctggctcattt
ttttgtatgattcatctgccctaagtttctcctggagccatttcagatca
ttccaagtataaaacacatgatcaaaacctccccaaatactgagaacaga
ggggataaaacaaaatataaactttggacacaggacctagacactctgtg
ttggaactgacctgaaagtcttctctctgaggactatagttcatggtagt
agatggcatcgttctggcttccaaaggagggaagcaactaagagtcctaa
ttagataacataacatgtttatgatctataacaatgactagcatggcaca
ataaccctaaggttgcaggagtggcacctataccctggtggtaaccaact
gctctctaatgtatttcctccacaagaaaaaaatgatgcctagtactcta
agcctagccaactatacagggatagcaaagtcatggatctcatagaaaac
ctacaaatgctagtgtactaatacagaacaattcctaaccacaccctaat
atttgatattatactcacagataagtataggtctcaaccctcctcaaaaa
agtctctttgcaagagatgataatcagtatagaaaaccacaaccatcaaa
attaatagatcaaaagattgtgtggagcccagtcctaactggtacattga
ccatacaacacctacccctaaggctcaggatcactgcagaagaacaagac
tgaaagattgtaagcagaagtttactatagattgatcctctcagaaatgt
cagagagcgggtgtgtgcgccacgccttatccaagcactcagagcagagc
agccgattctgaatgaagccagctgatctacaaaggtgagttccaggaac
cgcccagaggacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89183986_89185125
seq2: B6Ng01-290B22.b_46_1170

seq1  GAATTCATTTTCTGCTTCATCCAAAAGTTCTGTATGAAATCTCTGCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTGCTTCATCCAAAAGTTCTGTATGAAATCTCTGCATTT  50

seq1  GGTATTCAAGAATCCAAAAATGAGGTATAATATGTTTAAAAATATGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCAAGAATCCAAAAATGAGGTATAATATGTTTAAAAATATGAACA  100

seq1  AAAGATTACTCTACCAAGTCAAAGAAATGCTCTAATAAAATTGAACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTACTCTACCAAGTCAAAGAAATGCTCTAATAAAATTGAACAGCT  150

seq1  TGGTGAGAACAAGGAACATGTGCAGTTGGTGTATTCGTTCAGTTCTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAACAAGGAACATGTGCAGTTGGTGTATTCGTTCAGTTCTATTA  200

seq1  TTATTTATATAAAAAGATGTTAAAGAAGATGAGTGAATCAAAATACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATAAAAAGATGTTAAAGAAGATGAGTGAATCAAAATACAGAA  250

seq1  TGCGCTTGATCTCATCAAATCAGATCAACATTTTACTTATGGTTATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTTGATCTCATCAAATCAGATCAACATTTTACTTATGGTTATCTTT  300

seq1  TATATGTAGGGAGCTACAGAATAGTTGTTATTTCAGATTTATTGATGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAGGGAGCTACAGAATAGTTGTTATTTCAGATTTATTGATGGGG  350

seq1  GTAAAGTAATAGAAATTAGTAAGGGAGCAAATTCATTAGTACCAGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTAATAGAAATTAGTAAGGGAGCAAATTCATTAGTACCAGAACAT  400

seq1  TGATGATATATGGAGAGAGGAACACTTTAAGAAAGAGAAGTTGATTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATATATGGAGAGAGGAACACTTTAAGAAAGAGAAGTTGATTTTTC  450

seq1  ACCTTTTCAGATTTTATAAACAGGTCTGTGAGGGGACCTGGTGGGACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCAGATTTTATAAACAGGTCTGTGAGGGGACCTGGTGGGACATC  500

seq1  TCATAGCTTGGCTGTGTCTCTTGTTGAGCAGGTGAATGCTGCTGCCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCTTGGCTGTGTCTCTTGTTGAGCAGGTGAATGCTGCTGCCAAGG  550

seq1  CCATTCTGCTGTATCTGCTTCAGGGACGATTGATGATGACAGCTCTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGCTGTATCTGCTTCAGGGACGATTGATGATGACAGCTCTGACC  600

seq1  TGGAACAAGTTTATCGAATCTCTCGCTCCTGTCATTCCAGTGCTACAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAAGTTTATCGAATCTCTCGCTCCTGTCATTCCAGTGCTACAGGT  650

seq1  ACTCTGTGCAATTCATTTTTTATGATGCCATTTATCTTTGGCTGTCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGCAATTCATTTTTTATGATGCCATTTATCTTTGGCTGTCTGTC  700

seq1  TGTGATTTAAAAGAATGCAAACAGCAGAACTGTCATATCGTGAGAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTAAAAGAATGCAAACAGCAGAACTGTCATATCGTGAGAAAAAT  750

seq1  GAAGTGGCACTGTGAAGGCACTGGGGATAAGTGAGCAGGAAGTGTGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCACTGTGAAGGCACTGGGGATAAGTGAGCAGGAAGTGTGTGGC  800

seq1  TATCTTGTTCCTGGCAGAAGGTTAAACAGGGATAGCGAATTTGCCTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTTCCTGGCAGAAGGTTAAACAGGGATAGCGAATTTGCCTGTGT  850

seq1  ATGCTTTACATAGCGGGGTGGGAGGTCAGAAAGTATTGACTGTGCAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTACATAGCGGGGTGGGAGGTCAGAAAGTATTGACTGTGCAAAAT  900

seq1  ATAGTTCAACCTTTTGTAAAGACTTTGAGTCAAAGCCAGTAGTCCTTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCAACCTTTTGTAAAGACTTTGAGTCAAAGCCAGTAGTCCTTGTT  950

seq1  AAACAGACATTGCATAATTAGCTTGCCTCATGAATTCTATTTGTGCATGT  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACAGACATTGCATAATTAGCTTGCCTCATGAATTCTATTTGTGCATGT  999

seq1  ATTTAATTAGAGTAAAGTTTGAATAATGAGCTTGTAAGTACAAGACTTTC  1050
      |||||||||||||||   ||||   |||||| ||||||||||||||||| 
seq2  ATTTAATTAGAGTAA--GTTGA--TATGAGC-TGTAAGTACAAGACTTTT  1044

seq1  TTAAGCAGTCCTTTTTGGCATTGAATGAGGAAAGTTTAGGATTCCATTTC  1100
       | |||||| |||||||||||||||||||  ||||||| ||||| |||  
seq2  CTTAGCAGT-CTTTTTGGCATTGAATGAG--AAGTTTA-GATTCAATT--  1088

seq1  CCTTGGATGGAAAGGTAGAGAGCTAGAACCCACAAACTTA  1140
      |||||||||||||| |||||||||   |||||| ||||||
seq2  CCTTGGATGGAAAGTTAGAGAGCT--GACCCAC-AACTTA  1125


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