BAC Information

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BAC

Clone NameB6Ng01-291J18
Chromosome18 (Build37)
Map Location 42,043,366 - 42,044,482
singlet/doubletsinglet
Overlap genePrelid2
Upstream geneLOC677182, LOC100041988, LOC100041997
Downstream geneGm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291J18.bB6Ng01-291J18.g
ACCGA088451GA088452
length1,2131,119
definitionB6Ng01-291J18.b B6Ng01-291J18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaatggctaagaagtacctaaaggaatg
ttcaacatccatagtcatcagggaaatggaaatcaaaacaaccctgatat
tctatctcataccattcagaatggctaagatgaaaaactcatgtgacagc
agatgctggcaaggaagtggagaaagaaaaacactcctccattactggtg
ggattgtaagctggtacaactactctggaaatcagtttggtggttcctca
gaaaattggactacctgatgacccagcaataccactcctggacatatacc
cagaagatgttccaacatgtaatgaggacacatgctccactatgttcata
gcagcactatttagaatagccagaagctggaaagaacccagatatccctc
aacagaggaatggatacagaaaatgtggtacattacacaatggagtacta
ctcagtattcaaaacaatgaatttatgaaattttcaggcaaaatggatgg
aactggaaaatatcttcctgagtgaggtaacctaaccacaaaagaataca
catggtatacactcactgataggtagatattagctcaggagctcagaata
cccaagatacaattcacagaccacttgaacctcaagaaggaagaccaaag
tgtggatgctttggtccttcttaaaagggggatcaaaatacccatgtgta
ctggctggtttatgtgttgacataggctggagttatcacagagaaaggag
ctttagttgagaaaatgcctccatgaggaaatgcctacagctgtaaggca
ttttctcagttagtgatgaagtgggagggcccattgtgggtgatgccatc
cctgggatggtaatattgggttctataagagagtaggctgaacaaaccaa
gggaaagcaaaccagtaagtaacatcctccatggcctctgcatagctcct
gctttcctgacctgcttagttccagtccttatgtcctttggtgatgaaca
gcacatgggaagtgtaagctgaataaacccttctcacaacttgcttcttg
gtcatgatgttttgctagaatagaaacctgactagacacatagacgatga
cagagacaatggttgtgaggaaaggactacgaaagagatatccatcaata
tacagttcacgactccagaaccatatgtgtgaatccaacaaggtgtcttg
tgctcgtgtacga
gaattcccagggcaaacctcagaatctttatttatgtcaattagtggccc
agtaagtggtggcggtcttaatttagacggatgggatggaccgtcgctca
gttccccctctccaaggaagtctgtgctttccttgttttaaagacatagc
gtctgaaaaactaagtttgagaaagaatttatgtgtcagtttgcattctt
cctggaggtgaaggggtatttaaatatttaacgggatggttggaacgaga
ataaaattgaaacaaggaagaaaactccttgtcaattctatcagggcagg
gattttgtcttagctgttcagcatttaacatccagtgcacatagtaggca
cacaaaaataattgtcagctctgctgttgaataaattaataaatgaacag
aagtgaataccatcttggcctggttcttagactctgcttggattttatcc
tactactttttacacccgccatccctaccgctttctctcccaggatttag
accactagcttttttttttttttttaagatttatatttagttatgtatgt
gtgagattgtacatgcatgtgatttcaggtgtccgaggagaccaaaaaag
cgtgtaggagtccctagagctggtattacaggaggttgcaggctgcctgg
tgtacgtgctgggacttgaacccaggtcctctgcaggagcagctagtgct
tttagtcagtcagccatctctgcagccccaacagttgactaggttttttt
tttttttttttgacagggtttctctgtgtagcccctgggctatcctggaa
actcactctgtagaccaggctggcccacaaactcagaaatctgcttgccc
tctgcctcccaagtgctgggattaaaggtgtgcgcccaccacctgcctag
caagagactggttttaaagtacaatttcagcaaacatcttcaggtatgat
taaagaagaagctgctttcatcgtgctcagatgagctggagttcggaagg
tctcagatgtgtacaaagttacttgacacattttgttgaatgcatcttag
aatccatgaactgtgtattccatgtcaccatccagcttcactggtaaggc
ctagagtcctaatctattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42043366_42044482
seq2: B6Ng01-291J18.g_67_1185 (reverse)

seq1  CAATAGATTAGAGACTTCTTAGCCCTAACAGTGAAAGCCTGGATGTGTAC  50
      ||||||||||| ||| |||  ||| || |||||||   |||||||   ||
seq2  CAATAGATTAG-GAC-TCTAGGCCTTACCAGTGAA--GCTGGATGGTGAC  46

seq1  ATTGATAACACAGTTCATGTGATTCTAAGATGCAATTCACAAAAATGTGT  100
      || ||  |||||||||||| ||||||||||||| |||||  |||||||||
seq2  ATGGAATACACAGTTCATG-GATTCTAAGATGC-ATTCAACAAAATGTGT  94

seq1  AAAAGTACCTTTGTAACACATCTGAGAACCCTTCCG-ACTCC-GCTCATC  148
        ||||| |||||| ||||||||||||  ||||||| ||||| |||||||
seq2  -CAAGTAACTTTGT-ACACATCTGAGA--CCTTCCGAACTCCAGCTCATC  140

seq1  TGGGCACGATG-AAGCAGCTTC-TCCTTAATCATACCTGGAGATGTTTGC  196
      || |||||||| |||||||||| || ||||||||||||| ||||||||||
seq2  TGAGCACGATGAAAGCAGCTTCTTCTTTAATCATACCTGAAGATGTTTGC  190

seq1  TGAAATTGTACTTTAAAAACCAGTCTCCTGCTAGGCA-GTGGT-GGCGCA  244
      |||||||||||||| |||||||||||| ||||||||| ||||| ||||||
seq2  TGAAATTGTACTTT-AAAACCAGTCTCTTGCTAGGCAGGTGGTGGGCGCA  239

seq1  CACCTTTAATCCCAGCACTTGGGAGGCAGA-GGCAAGCAGATTTCTGAGT  293
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACCTTTAATCCCAGCACTTGGGAGGCAGAGGGCAAGCAGATTTCTGAGT  289

seq1  TTGT-GGCCAGCCTGGTCTACAGAGTGAG-TTCCAGGATAGCC--AGGGC  339
      |||| |||||||||||||||||||||||| |||||||||||||   ||||
seq2  TTGTGGGCCAGCCTGGTCTACAGAGTGAGTTTCCAGGATAGCCCAGGGGC  339

seq1  TACACAGAGAAACCCTGTC--AAAAAAAAAAAAAAAACCTAGTCAACTGT  387
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCAAAAAAAAAAAAAAAAAACCTAGTCAACTGT  389

seq1  TGGGGCTGCAGAGATGGCTGACTGACTAAAAGCACTAGCTGCTCCTGCAG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGCAGAGATGGCTGACTGACTAAAAGCACTAGCTGCTCCTGCAG  439

seq1  AGGACCTGGGTTCAAGTCCCAGCACGTACACCAGGCAGCCTGCAACCTCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGGGTTCAAGTCCCAGCACGTACACCAGGCAGCCTGCAACCTCC  489

seq1  TGTAATACCAGCTCTAGGGACTCCTACACGCTTTTTTGGTCTCCTCGGAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATACCAGCTCTAGGGACTCCTACACGCTTTTTTGGTCTCCTCGGAC  539

seq1  ACCTGAAATCACATGCATGTACAATCTCACACATACATAACTAAATATAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAATCACATGCATGTACAATCTCACACATACATAACTAAATATAA  589

seq1  ATCTTAAAAAAAAAAAAAAAAGCTAGTGGTCTAAATCCTGGGAGAGAAAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAAAAAAAAAAAAAAGCTAGTGGTCTAAATCCTGGGAGAGAAAG  639

seq1  CGGTAGGGATGGCGGGTGTAAAAAGTAGTAGGATAAAATCCAAGCAGAGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGGGATGGCGGGTGTAAAAAGTAGTAGGATAAAATCCAAGCAGAGT  689

seq1  CTAAGAACCAGGCCAAGATGGTATTCACTTCTGTTCATTTATTAATTTAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACCAGGCCAAGATGGTATTCACTTCTGTTCATTTATTAATTTAT  739

seq1  TCAACAGCAGAGCTGACAATTATTTTTGTGTGCCTACTATGTGCACTGGA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGCAGAGCTGACAATTATTTTTGTGTGCCTACTATGTGCACTGGA  789

seq1  TGTTAAATGCTGAACAGCTAAGACAAAATCCCTGCCCTGATAGAATTGAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATGCTGAACAGCTAAGACAAAATCCCTGCCCTGATAGAATTGAC  839

seq1  AAGGAGTTTTCTTCCTTGTTTCAATTTTATTCTCGTTCCAACCATCCCGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTTTCTTCCTTGTTTCAATTTTATTCTCGTTCCAACCATCCCGT  889

seq1  TAAATATTTAAATACCCCTTCACCTCCAGGAAGAATGCAAACTGACACAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTAAATACCCCTTCACCTCCAGGAAGAATGCAAACTGACACAT  939

seq1  AAATTCTTTCTCAAACTTAGTTTTTCAGACGCTATGTCTTTAAAACAAGG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTCTCAAACTTAGTTTTTCAGACGCTATGTCTTTAAAACAAGG  989

seq1  AAAGCACAGACTTCCTTGGAGAGGGGGAACTGAGCGACGGTCCATCCCAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGACTTCCTTGGAGAGGGGGAACTGAGCGACGGTCCATCCCAT  1039

seq1  CCGTCTAAATTAAGACCGCCACCACTTACTGGGCCACTAATTGACATAAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTAAATTAAGACCGCCACCACTTACTGGGCCACTAATTGACATAAA  1089

seq1  TAAAGATTCTGAGGTTTGCCCTGGGAATTC  1117
      ||||||||||||||||||||||||||||||
seq2  TAAAGATTCTGAGGTTTGCCCTGGGAATTC  1119