BAC Information

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BAC

Clone NameB6Ng01-296H14
Chromosome18 (Build37)
Map Location 36,279,110 - 36,280,209
singlet/doubletsinglet
Overlap geneLOC100042150
Upstream geneCtnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2
Downstream geneLOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296H14.bB6Ng01-296H14.g
ACCGA092078GA092079
length7591,081
definitionB6Ng01-296H14.b B6Ng01-296H14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcttcaggagaaatgccccctctcgtggccctgcccctcacag
tctgtagcactcaggagagtggggtctgcccctcacctgggcagcacagt
gggcacaggtgagcagccctgagggcatgggcttgggagatctgaccttg
ccactggtctttctgtggcatgggtgtaggagagattcctcctctaaccc
tcctctagggcttgagagtgggagagttggtcccatctctagccagtttc
agcattggatgagctagtggggggtggggtgggcagtgctgcagagcttg
ccctggtggtgtgggtgctgggacagctggtaggctgaccgactcagcta
acacccaggcccagatccagggctttgagttagtccaccacaggatctac
ctcatctatgaactgctgcagtgtgtgaaggggctggtcctgcagatccc
atgacacagaaccacaacaggatatccgagaggagtcctggtgaggatcc
ggtattgatgatgtgcagaagccagaggcctcgaaccagaccaatgactc
attgcagtgaacatttacaagtacaaaagggtacactgagggacacagtg
tgagcttccaagatgagactgttttattttgttttgttttttattttgtg
ggggagttttgcaaggatggacagtgggtatgaaagagacaaagagatga
atgggactgtggtgagcgatataaaatttaaaaatatttataaaaaggtt
aaagatagc
gaattctccagcctcagaccaggccaaagggcagagtgtcccagttgtac
ttgacagtgatggcagtgtcagttcccggtagctcgcagaccccttcaga
ctagaactgcggagggccaatgtgtaaaacgggggctgaacattcacata
gccaggatcccagacagaaggactgtgatgtgtcgatgatgacccctggc
cctgctgaaggtcttcattggtacagagaagcaagaactacgtctccacc
caggcttctccagaccaggtaggagagccccttgcctcaggtggacagat
gccatgataagcaaggctctcaggatgccacttttgctgagatcagaaca
ggaactgagataaagacattggagatgtgaatgtagtggctaaaggccca
cgcagggaaagaggtgagctagccaccagaaaagaggaacataggggcaa
agttgtagatcgctctacagcagctcattctcttcctttctgggcacaca
gcataaaacataagacattgctttcagatttgcttgcttatttatttcaa
tggttagcctggaagcaccatgaattcagggaccaagtcttggatctcca
gtgccaccatagccttcggcatgtatgaatgactcagtaacatttgctgg
ttgagatatgagtggtccctcaccacagaactgatacaatgctgcaaaca
caggaggagtgaggaacctgaagacccagatgacccagatgagcgagggc
aggaagctcttcaacagtgtggacacaccttcttctcaccccacaacctg
caagtctcctggcacccaattacatgacaggaaactgaggatgctaccct
aaaataagcggattgttgggcccctttccttccagatgtcccctcgagaa
aggaagttttgggaaatgctaacaactagtactaccacagaggcatgaac
agagacctgctgacttagagagtgagaaccctttccagagaggacacaca
cactacactcagatgagctctgagagagatgattagcagctagataggga
gaagaggatctgtaaaaaaggaagtcgtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36279110_36280209
seq2: B6Ng01-296H14.g_70_1150

seq1  GAATTCTCCAGCCTCAGACCAGGCCAAAGGGCAGAGTGTCCCAGTTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCCTCAGACCAGGCCAAAGGGCAGAGTGTCCCAGTTGTAC  50

seq1  TTGACAGTGATGGCAGTGTCAGTTCCCGGTAGCTCGCAGACCCCTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTGATGGCAGTGTCAGTTCCCGGTAGCTCGCAGACCCCTTCAGA  100

seq1  CTAGAACTGCGGAGGGCCAATGTGTAAAACGGGGGCTGAACATTCACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTGCGGAGGGCCAATGTGTAAAACGGGGGCTGAACATTCACATA  150

seq1  GCCAGGATCCCAGACAGAAGGACTGTGATGTGTCGATGATGACCCCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGATCCCAGACAGAAGGACTGTGATGTGTCGATGATGACCCCTGGC  200

seq1  CCTGCTGAAGGTCTTCATTGGTACAGAGAAGCAAGAACTACGTCTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGAAGGTCTTCATTGGTACAGAGAAGCAAGAACTACGTCTCCACC  250

seq1  CAGGCTTCTCCAGACCAGGTAGGAGAGCCCCTTGCCTCAGGTGGACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTCCAGACCAGGTAGGAGAGCCCCTTGCCTCAGGTGGACAGAT  300

seq1  GCCATGATAAGCAAGGCTCTCAGGATGCCACTTTTGCTGAGATCAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATAAGCAAGGCTCTCAGGATGCCACTTTTGCTGAGATCAGAACA  350

seq1  GGAACTGAGATAAAGACATTGGAGATGTGAATGTAGTGGCTAAAGGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAGATAAAGACATTGGAGATGTGAATGTAGTGGCTAAAGGCCCA  400

seq1  CGCAGGGAAAGAGGTGAGCTAGCCACCAGAAAAGAGGAACATAGGGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGGAAAGAGGTGAGCTAGCCACCAGAAAAGAGGAACATAGGGGCAA  450

seq1  AGTTGTAGATCGCTCTACAGCAGCTCATTCTCTTCCTTTCTGGGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGATCGCTCTACAGCAGCTCATTCTCTTCCTTTCTGGGCACACA  500

seq1  GCATAAAACATAAGACATTGCTTTCAGATTTGCTTGCTTATTTATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAACATAAGACATTGCTTTCAGATTTGCTTGCTTATTTATTTCAA  550

seq1  TGGTTAGCCTGGAAGCACCATGAATTCAGGGACCAAGTCTTGGATCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGCCTGGAAGCACCATGAATTCAGGGACCAAGTCTTGGATCTCCA  600

seq1  GTGCCACCATAGCCTTCGGCATGTATGAATGACTCAGTAACATTTGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCATAGCCTTCGGCATGTATGAATGACTCAGTAACATTTGCTGG  650

seq1  TTGAGATATGAGTGGTCCCTCACCACAGAACTGATACAATGCTGCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATATGAGTGGTCCCTCACCACAGAACTGATACAATGCTGCAAACA  700

seq1  CAGGAGGAGTGAGGAACCTGAAGACCCAGATGACCCAGATGAGCGAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGTGAGGAACCTGAAGACCCAGATGACCCAGATGAGCGAGGGC  750

seq1  AGGAAGCTCTTCAACAGTGTGGACACACCTTCTTCTCACCCCACAACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTCTTCAACAGTGTGGACACACCTTCTTCTCACCCCACAACCTG  800

seq1  CAAGTCTCCTGGCACCCAATTACATGACAGGAAACTGAGGATGCTACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCCTGGCACCCAATTACATGACAGGAAACTGAGGATGCTACCCT  850

seq1  AAAATAAGCGGATTGTTGG--CCCCTTCCTTCCAGATGTCCCCTCGAG-A  897
      |||||||||||||||||||  ||| ||||||||||||||||||||||| |
seq2  AAAATAAGCGGATTGTTGGGCCCCTTTCCTTCCAGATGTCCCCTCGAGAA  900

seq1  AGGAAGTTTTGGGAAATGCTAACAACTAGTACTACCACAGAGGCATGAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTTTGGGAAATGCTAACAACTAGTACTACCACAGAGGCATGAAC  950

seq1  AGAAGACCTGGCTGGACTTAGAGAGTGAGAACCCTTCCCAGAAGAGGGAC  997
      || |||||| ||| |||||||||||||||||||||| |||| ||| ||||
seq2  AG-AGACCT-GCT-GACTTAGAGAGTGAGAACCCTTTCCAG-AGA-GGAC  995

seq1  ACCACCACCACTACCACCCAAGATGAGCCCCGAGGAAGAGAATGAATTAG  1047
      | |||   ||||| ||| | |||||||| | |||  |||| ||| |||||
seq2  A-CAC--ACACTA-CACTC-AGATGAGCTCTGAG--AGAG-ATG-ATTAG  1036

seq1  CCAGCTAAGATAGGGGGAGAAAAGAGGGTTCTGTAAAAAAAGGAAGTCGT  1097
       ||||| |||||||    || |||| || ||||| |||||||||||||||
seq2  -CAGCT-AGATAGG----GAGAAGA-GGATCTGT-AAAAAAGGAAGTCGT  1078

seq1  TTC  1100
      |||
seq2  TTC  1081