BAC Information

Click to search

BAC

Clone NameB6Ng01-296J01
Chromosome18 (Build37)
Map Location 25,135,628 - 25,136,658
singlet/doubletsinglet
Overlap geneFhod3
Upstream geneC230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos
Downstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296J01.bB6Ng01-296J01.g
ACCGA092146GA092147
length1,2301,031
definitionB6Ng01-296J01.b B6Ng01-296J01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaacccacatctgtatggcaagcattacccactgagccatctct
ccagccccaggcaggattttggagagatttcaaaactgtattgcttttgc
tgcttctatctctgtagcattttcttcttcttggtggtcttcaaaagaat
atagcagtcattatttaaaattctatttccctttaggtatagtaccccct
tcaccaagaatttgaggcaggggttccctttcctatgatgtaacttggct
ccagggctagggcaccagggcaccagggatgcacttttttttttttctct
tgctacttctgagttttagcaaactctttcaagatgcttgcttgagctca
gtagagtgaaggctgaagacaagcctgtcctatccttgtcagggactttc
tgggagtttcctcacagcactctggcctccacctgattcgtaagtttgtt
gtggagctacaggttgcagctgtgtggtcatcaaaaagtcagccaaagtg
aacctgaagccctggttctcctagatgagggagaacaagcagacagtgaa
ggccttgagacgaatgctcttctactgtgtgcccagacacacagaaaatg
aacacatatgcaggaagttaaaaggctatattgagtatgcttttaatctt
aaaatatttttctgattaaacttgctgttcgacaaatgaaaacatcccag
ttgcaggactgaactctgcaggtgtcttgggattttcaatgtcctgaagg
ttgaggtggtgggaggggggcccaacaaatctctgaccagttctttgtcg
agttggatagtcaagttcaccaccacaacaggaaggcaaacaaacaaaca
aacaacaggatctgagagaacaacagggcaagcaagcatatttagtcatt
tcattaatgaaactgaaaagatgaatgcggtcctgtgaactagccagtcc
ttggtttggaaaggaagcctgtccaagggtagaaacctcttcttcctcct
ctccccacctcctccctctccaattgttttctatgaggccactgatgaag
cctatgccttcgcaaggattctgtttcccagaagcagccaagtcagtgga
gggccatggacctttttcctagaaagatgtctgacccactttaagaattg
atccctctaagcgatccacgtcagttactgcctcggtgtgagggaggcca
tacatgagtcatcctcttgtagtagggatc
gaattctgggccctggcccacaagaattcatagggaatgaaaagatcagg
gttggcacatgagccaggacaggaagtcacctgcaccaagtccctgagct
atggccttagagactgacagctgcctgcttctgacagtgcagtttgcaga
aaggaagccaactctgtaacagtgaagcccagggggtagggtgggggact
ggaaaggcctgaaggaacttatcagtagataaattttgtgaagtataaaa
cagagccagctgtccagaaatgaagattacaaacaaaatgaagaggtaca
aatctttatgattaatttaggtgtttacctggagctttgtgtaagcagta
gaaaatatccactttgctaaattttccagatatttaacagcattaagaag
agtcatttgaaggcctgagagatggctcaaatacccaacatgataacctg
ggattgaccccctaggacccacatgatggaaggaaagaactgacatgtcc
tctgacctgcacacatgaacatgtgtgtggggcaaacatgtccacatact
cacacacattcatgcaaaataaataaaatgtaaaaaaaatgaaaagggtc
aattaataaaaataacattaactcgctcctttaccaatgagaaagggatt
ccaaagcctggcagaacacgccagtcaaggggcatcttgttactgcttgc
agaatgggatactggaaatcaacaagcttggatgcttttacaggaagcag
catgcccagtttggggtacaaaaccccacattctaggaggctaaaataac
ttgttacctggccaatttctaaatgagaccaaaggaaactggtcaacctg
gttcttgtccttactcaggaaagagccccccatctttccaactggctcaa
aacacaagctttgtggaaatatgacagataatatttcccaaggaaaataa
ctattcttttacaaacaagtagtcctggatgcgtgccatcagaatggcat
gtagcctggcacagtgagtgctgtcgggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_25135628_25136658
seq2: B6Ng01-296J01.g_69_1099 (reverse)

seq1  TCTCCCGACAGCACTCACTGTGCCAGGCTTACCTGCCA-TCTGCTGGCAC  49
      |||||||||||||||||||||||||||| ||| ||||| |||| ||||||
seq2  TCTCCCGACAGCACTCACTGTGCCAGGC-TACATGCCATTCTGATGGCAC  49

seq1  GCATCCAGGACTACTTGTTTGTAAAAGAAAAGTTATTTTCCTTGGGAAAT  99
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCATCCAGGACTACTTGTTTGTAAAAGAATAGTTATTTTCCTTGGGAAAT  99

seq1  ATTATCTGTCATATTTCCACAAAGCTTGTGTTTTGAGCCAGTTGGAAAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGTCATATTTCCACAAAGCTTGTGTTTTGAGCCAGTTGGAAAGA  149

seq1  TGGGGGGCTCTTTCCTGGGTAAGGACAAGAACCAGGTTGACCAGTTTCCT  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGGGGGCTCTTTCCTGAGTAAGGACAAGAACCAGGTTGACCAGTTTCCT  199

seq1  TTGGTCTCATTTAGAAATTGGCCAGGTAACAAGTTATTTTAGCCTCCTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCATTTAGAAATTGGCCAGGTAACAAGTTATTTTAGCCTCCTAG  249

seq1  AATGTGGGGTTTTGTACCCCAAACTGGGCATGCTGCTTCCTGTAAAAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGGTTTTGTACCCCAAACTGGGCATGCTGCTTCCTGTAAAAGCA  299

seq1  TCCAAGCTTGTTGATTTCCAGTATCCCATTCTGCAAGCAGTAACAAGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTTGTTGATTTCCAGTATCCCATTCTGCAAGCAGTAACAAGATG  349

seq1  CCCCTTGACTGGCGTGTTCTGCCAGGCTTTGGAATCCCTTTCTCATTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGACTGGCGTGTTCTGCCAGGCTTTGGAATCCCTTTCTCATTGGT  399

seq1  AAAGGAGCGAGTTAATGTTATTTTTATTAATTGACCCTTTTCATTTTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCGAGTTAATGTTATTTTTATTAATTGACCCTTTTCATTTTTTT  449

seq1  TACATTTTATTTATTTTGCATGAATGTGTGTGAGTATGTGGACATGTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTATTTATTTTGCATGAATGTGTGTGAGTATGTGGACATGTTTG  499

seq1  CCCCACACACATGTTCATGTGTGCAGGTCAGAGGACATGTCAGTTCTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACACATGTTCATGTGTGCAGGTCAGAGGACATGTCAGTTCTTTC  549

seq1  CTTCCATCATGTGGGTCCTAGGGGGTCAATCCCAGGTTATCATGTTGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCATGTGGGTCCTAGGGGGTCAATCCCAGGTTATCATGTTGGGT  599

seq1  ATTTGAGCCATCTCTCAGGCCTTCAAATGACTCTTCTTAATGCTGTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCCATCTCTCAGGCCTTCAAATGACTCTTCTTAATGCTGTTAAA  649

seq1  TATCTGGAAAATTTAGCAAAGTGGATATTTTCTACTGCTTACACAAAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGAAAATTTAGCAAAGTGGATATTTTCTACTGCTTACACAAAGCT  699

seq1  CCAGGTAAACACCTAAATTAATCATAAAGATTTGTACCTCTTCATTTTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAACACCTAAATTAATCATAAAGATTTGTACCTCTTCATTTTGT  749

seq1  TTGTAATCTTCATTTCTGGACAGCTGGCTCTGTTTTATACTTCACAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATCTTCATTTCTGGACAGCTGGCTCTGTTTTATACTTCACAAAAT  799

seq1  TTATCTACTGATAAGTTCCTTCAGGCCTTTCCAGTCCCCCACCCTACCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTACTGATAAGTTCCTTCAGGCCTTTCCAGTCCCCCACCCTACCCC  849

seq1  CTGGGCTTCACTGTTACAGAGTTGGCTTCCTTTCTGCAAACTGCACTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCACTGTTACAGAGTTGGCTTCCTTTCTGCAAACTGCACTGTC  899

seq1  AGAAGCAGGCAGCTGTCAGTCTCTAAGGCCATAGCTCAGGGACTTGGTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGCAGCTGTCAGTCTCTAAGGCCATAGCTCAGGGACTTGGTGC  949

seq1  AGGTGACTTCCTGTCCTGGCTCATGTGCCAACCCTGATCTTTTCATTCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTTCCTGTCCTGGCTCATGTGCCAACCCTGATCTTTTCATTCCC  999

seq1  TATGAATTCTTGTGGGCCAGGGCCCAGAATTC  1031
      ||||||||||||||||||||||||||||||||
seq2  TATGAATTCTTGTGGGCCAGGGCCCAGAATTC  1031