This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Parameter
BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
B6Ng01-300E21
Chromosome
18 (Build37)
Map Location
19,646,436 - 19,647,617
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC100040658
,
LOC665624
Downstream gene
LOC665629
,
Dsc3
,
Dsc2
,
Dsc1
,
Dsg1c
,
Dsg1a
,
Dsg1b
,
Dsg4
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100040658
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040658
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 86 ESTs, 1 Protein
pseudo
: _no_value
name
LOC665624
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665624
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
LOC665629
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665629
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Dsc3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13507
MGI:1194993
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dsc2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13506
MGI:103221
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dsc1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13505
MGI:109173
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dsg1c
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:211924
MGI:2664358
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dsg1a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13510
MGI:94930
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 34 ESTs, 8 Proteins
name
Dsg1b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:225256
MGI:2664357
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dsg4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16769
MGI:2661061
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dsc3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:133778946
GeneID:13507
MGI:1194993
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: desmocollin 3
transcript_id
: NM_007882.3
name
Dsc2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142348049
GeneID:13506
MGI:103221
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: desmocollin 2
transcript_id
: NM_013505.3
name
Dsc1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142362408
GeneID:13505
MGI:109173
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: desmocollin 1
transcript_id
: NM_013504.3
name
Dsg1c
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:32129204
GeneID:211924
MGI:2664358
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: desmoglein 1 gamma
transcript_id
: NM_181680.1
name
Dsg1a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94404300
GeneID:13510
MGI:94930
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 34 ESTs, 7 Proteins
product
: desmoglein 1 alpha, transcript variant 1
transcript_id
: XM_484705.3
name
Dsg1a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94404301
GeneID:13510
MGI:94930
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 31 ESTs, 3 Proteins
product
: desmoglein 1 alpha, transcript variant 2
transcript_id
: XM_980693.1
name
Dsg1b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:32129200
GeneID:225256
MGI:2664357
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: desmoglein 1 beta
transcript_id
: NM_181682.1
name
Dsg4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:34328476
GeneID:16769
MGI:2661061
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: desmoglein 4
transcript_id
: NM_181564.2
name
Dsc3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:133778947
GeneID:13507
MGI:1194993
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0007156 - homophilic cell adhesion [Evidence IEA]
codon_start
: 1
product
: desmocollin 3
protein_id
: NP_031908.3
name
Dsc2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7305007
CCDS:CCDS29077.1
GeneID:13506
MGI:103221
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA]
codon_start
: 1
product
: desmocollin 2
protein_id
: NP_038533.1
name
Dsc1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31981297
CCDS:CCDS29078.1
GeneID:13505
MGI:109173
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: desmocollin 1
protein_id
: NP_038532.2
name
Dsg1c
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:32129205
CCDS:CCDS29079.1
GeneID:211924
MGI:2664358
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence TAS] [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA]
codon_start
: 1
note
: desmoglein 1gamma; desmoglein 6
product
: desmoglein 1 gamma
protein_id
: NP_859008.1
name
Dsg1a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51770799
GeneID:13510
MGI:94930
definition
codon_start
: 1
product
: desmoglein 1 alpha isoform 1
protein_id
: XP_484705.1
name
Dsg1a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94404302
GeneID:13510
MGI:94930
definition
codon_start
: 1
product
: desmoglein 1 alpha isoform 2
protein_id
: XP_985787.1
name
Dsg1b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:32129201
CCDS:CCDS29081.1
GeneID:225256
MGI:2664357
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA]
codon_start
: 1
note
: desmoglein 1beta; desmoglein 5
product
: desmoglein 1 beta
protein_id
: NP_859010.1
name
Dsg4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31621307
CCDS:CCDS29082.1
GeneID:16769
MGI:2661061
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030057 - desmosome [Evidence IMP]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0042640 - anagen [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0016337 - cell-cell adhesion [Evidence IMP]; GO:0007156 - homophilic cell adhesion [Evidence IEA]; GO:0030216 - keratinocyte differentiation [Evidence IMP]
codon_start
: 1
note
: lanceolate hair
product
: desmoglein 4
protein_id
: NP_853543.1
name
LOC665624
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665624
definition
number
: 4
pseudo
: _no_value
name
LOC665624
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665624
definition
number
: 3
pseudo
: _no_value
name
LOC665624
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665624
definition
number
: 2
pseudo
: _no_value
name
LOC665624
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665624
definition
number
: 1
pseudo
: _no_value
name
LOC665629
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665629
definition
number
: 2
pseudo
: _no_value
name
LOC665629
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665629
definition
number
: 1
pseudo
: _no_value
name
LOC100040658
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149269682
GeneID:100040658
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 86 ESTs, 1 Protein
product
: hypothetical protein LOC100040658
pseudo
: _no_value
transcript_id
: XR_032134.1
clone name
MSMg01-349L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-094C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-322L06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-449H05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535E05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-071F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-074D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-449D17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-099K13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-398P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-109P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-209C22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-318A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-064F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-309H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-115P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-175J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-208N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-127E03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-268I18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-465B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354H21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-063H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176L05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-418I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501K14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-102A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-388K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459I04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-524K01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-446D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182E16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-401J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306K05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466D15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068G11
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-385P22
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-167B10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-378N15
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-406E08
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-521M06
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-056D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305G10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-274P19
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-161C09
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-326M13
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-355G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546O23
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-341L01
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-132D14
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-099A16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-405C04
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-466D15
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-390O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-079L08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-171D10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-196K02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-118G05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-093E05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-198B17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-037K11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-012H09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-246H12
singlet/doublet
singlet
plural/unique
unique
clone name
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