BAC Information

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BAC

Clone NameB6Ng01-300F21
Chromosome6 (Build37)18 (Build37)
Map Location 124,126,947 - 124,126,98026,498,629 - 26,499,756
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneClec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34
Downstream geneVmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300F21.bB6Ng01-300F21.g
ACCGA094963GA094964
length9721,125
definitionB6Ng01-300F21.b B6Ng01-300F21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,126,947 - 124,126,980)(26,498,629 - 26,499,756)
sequence
gaattctttgtttagctctgtataccatttttaatagtgctttttggttt
tctgaagtttaaattcctgagttctttgtatatattggataataatcccc
tatcggatttaggattgttaaagattgattcccaatctgttggttgcctt
tttgtcttactgagagtatcctttgcctgacagaagctttgcaattttat
gcggtaccattgtagagtcttgatcttacagcacacacaattggtgttct
gttcaggaattttccccctatgcccatgtattcagagctcttccccactt
tctcctgtataagtttcagtgtctctggttttatgtggagttccttgatc
cacttagacttgagctttgtacaaggagataagaacttatcaatttgcat
tcttctacatgctaacaagcagttgtgccagcaccatttgttgaaagtgc
ttccattttcccactggctagttttagctcctttgtcaaagatcaagtga
ccacaggtgtgtgggtccatttctgtgtcttccattctattccattgatc
tacctttctgtcactgtacaaataccatgtagttttttgttttttttttc
ttcacaattgctctttagtacagcttgaagtcagtgattccaccagaggt
tcttttattgttgagaatagttttgctatcctagattattggttattcca
gacaaatttgcaaactgccctttttaactctgtgaagaattgagttggag
ttttggtgggaactgctttgaatctgtagattgctttaggcaagattaca
ttttgactatattattcttacaaaatcatgaccatgggagatctttcaat
cttctgagatatttgaattctttccgcagagactttaagatcttatcata
tagatctttcacttgcttagttagatgcacaccaaggaattttatattat
ttgtgactattgtgaagggtgt
gaattctttcttagaatgaagtaaaaatcctttaaatgaagctgtggttt
taaaggtttggcctagctgcctgcatataaagtggattttttaaaacttt
ttatttttcagtcttaaaactgacattagctgagactaactcagttttgt
atctttactgacaaatccatattaataacagcatcaatactgcattaaac
ctgaactataggaataatttgtaatcatgccaaaattaataacattgtat
caccccagagtctctttggtagcagagtgaaatggttattaacttgggtt
atcatcacaacattatggacatttaaataggctataactctagaaattta
aaggtcagtttgatttattcaatttagttttgtcgtatgtttggaaaact
aattaaaatcccaaaagcatggctttggctataatattctggctagcaag
tgagaagcctgtgcttttgactcaccatcacgaactatttcctaggcatg
gtgacctctgtgtgttcatggaacagtgtgtttatagcaaggttcaagaa
ggcaggttcttagaaaatcccatttttctggataaatagctttctttatg
tgagtttgttcatcacaacaccatgcctttgttgactatgagattagttt
tagaaagaatacgaagtcattttatataaagatctacaatgattctgaac
ccccaaatgcccatgttcccatttttctcacattctttcccgctgaaaaa
agcatcccttttgttattaatcaaactacatattttggccaaatagctgt
aaagaagtccttaaattatttggatgacaattttatgatcctcaaagcag
aaacttcagccatatgaatgtctacttgagtgtgacttcctgacaacagg
aaggatccaataaaagaaggaaaaggtagaaggaatgaaggcaggagtag
attttcttttattcataccatagaaaactggtaaccctggtcactgtaga
tacagttctcaggattatattcactaaaatggatctgtaggtggctctct
gaaaattcttcttattgcatgggttatggacaatggtgtactatgcatag
gtattgcttcctttatccacatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124126947_124126980
seq2: B6Ng01-300F21.b_984_1017 (reverse)

seq1  ACACCCTTCACAATAGTCACAAATTATATAAAAT  34
      |||||||||||||||||||||||| |||||||||
seq2  ACACCCTTCACAATAGTCACAAATAATATAAAAT  34

seq1: chr18_26498629_26499756
seq2: B6Ng01-300F21.g_69_1193

seq1  GAATTCTTTCTTAGAATGAAGTAAAAATCCTTTAAATGAAGCTGTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTAGAATGAAGTAAAAATCCTTTAAATGAAGCTGTGGTTT  50

seq1  TAAAGGTTTGGCCTAGCTGCCTGCATATAAAGTGGATTTTTTAAAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTTGGCCTAGCTGCCTGCATATAAAGTGGATTTTTTAAAACTTT  100

seq1  TTATTTTTCAGTCTTAAAACTGACATTAGCTGAGACTAACTCAGTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCAGTCTTAAAACTGACATTAGCTGAGACTAACTCAGTTTTGT  150

seq1  ATCTTTACTGACAAATCCATATTAATAACAGCATCAATACTGCATTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACTGACAAATCCATATTAATAACAGCATCAATACTGCATTAAAC  200

seq1  CTGAACTATAGGAATAATTTGTAATCATGCCAAAATTAATAACATTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTATAGGAATAATTTGTAATCATGCCAAAATTAATAACATTGTAT  250

seq1  CACCCCAGAGTCTCTTTGGTAGCAGAGTGAAATGGTTATTAACTTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGAGTCTCTTTGGTAGCAGAGTGAAATGGTTATTAACTTGGGTT  300

seq1  ATCATCACAACATTATGGACATTTAAATAGGCTATAACTCTAGAAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACAACATTATGGACATTTAAATAGGCTATAACTCTAGAAATTTA  350

seq1  AAGGTCAGTTTGATTTATTCAATTTAGTTTTGTCGTATGTTTGGAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGTTTGATTTATTCAATTTAGTTTTGTCGTATGTTTGGAAAACT  400

seq1  AATTAAAATCCCAAAAGCATGGCTTTGGCTATAATATTCTGGCTAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATCCCAAAAGCATGGCTTTGGCTATAATATTCTGGCTAGCAAG  450

seq1  TGAGAAGCCTGTGCTTTTGACTCACCATCACGAACTATTTCCTAGGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCCTGTGCTTTTGACTCACCATCACGAACTATTTCCTAGGCATG  500

seq1  GTGACCTCTGTGTGTTCATGGAACAGTGTGTTTATAGCAAGGTTCAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCTGTGTGTTCATGGAACAGTGTGTTTATAGCAAGGTTCAAGAA  550

seq1  GGCAGGTTCTTAGAAAATCCCATTTTTCTGGATAAATAGCTTTCTTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTTCTTAGAAAATCCCATTTTTCTGGATAAATAGCTTTCTTTATG  600

seq1  TGAGTTTGTTCATCACAACACCATGCCTTTGTTGACTATGAGATTAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGTTCATCACAACACCATGCCTTTGTTGACTATGAGATTAGTTT  650

seq1  TAGAAAGAATACGAAGTCATTTTATATAAAGATCTACAATGATTCTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAATACGAAGTCATTTTATATAAAGATCTACAATGATTCTGAAC  700

seq1  CCCCAAATGCCCATGTTCCCATTTTTCTCACATTCTTTCCCGCTGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATGCCCATGTTCCCATTTTTCTCACATTCTTTCCCGCTGAAAAA  750

seq1  AGCATCCCTTTTGTTATTAATCAAACTACATATTTTGGCCAAATAGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCTTTTGTTATTAATCAAACTACATATTTTGGCCAAATAGCTGT  800

seq1  AAAGAAGTCCTTAAATTATTTGGATGACAATTTTATGATCCTCAAAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTCCTTAAATTATTTGGATGACAATTTTATGATCCTCAAAGCAG  850

seq1  AAACTTCAGCCATATGAATGTCTACTTGAGTGTGACTTCCTGACAACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGCCATATGAATGTCTACTTGAGTGTGACTTCCTGACAACAGG  900

seq1  AAGGATCCAATAAAAGAAGGAAAAGGTAGAAGGAATGAAGGCAGGAGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCCAATAAAAGAAGGAAAAGGTAGAAGGAATGAAGGCAGGAGTAG  950

seq1  ATTT--CTTTATTCAATACCATAGAAAACTGGTAACCCT-GTCACTGTAG  997
      ||||   ||||||| |||||||||||||||||||||||| ||||||||||
seq2  ATTTTCTTTTATTC-ATACCATAGAAAACTGGTAACCCTGGTCACTGTAG  999

seq1  ATACAGTTTCTCCAGAATTTATATTCACTAAAAATGAATCTGTAGGT-GC  1046
      |||||| |||||  ||  ||||||||||| |||||| |||||||||| ||
seq2  ATACAG-TTCTCAGGA--TTATATTCACT-AAAATGGATCTGTAGGTGGC  1045

seq1  TCTCTGAAAAATTCTTC-TATTGCATTGGTTATGGACAAT-GTGTACTTA  1094
      |||||| |||||||||| |||||||| ||||||||||||| |||||| ||
seq2  TCTCTG-AAAATTCTTCTTATTGCATGGGTTATGGACAATGGTGTAC-TA  1093

seq1  TGCATTAGTATTGCTCCCCTTTAATCCACATATT  1128
      |||||  |||||||| ||  || |||||||||||
seq2  TGCATAGGTATTGCTTCC--TTTATCCACATATT  1125