BAC Information

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BAC

Clone NameB6Ng01-300P20
Chromosome18 (Build37)
Map Location 31,354,620 - 31,355,720
singlet/doubletsinglet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300P20.bB6Ng01-300P20.g
ACCGA095421GA095422
length1,2071,101
definitionB6Ng01-300P20.b B6Ng01-300P20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgggcaaatggatgtgtctggaggatatcatcctgagtgaggt
aacccaatcacaaaagaaatcacttggtatgcactcacttataagtggat
attagcccagaaacttagaatacccaagatacaatttgcaaaacacaaga
aaatcaagaagaaggaagaccaacgtgtggatacttcattcctccttaga
atagggaacaaaatacctatggaaggagttacagagacaaagtttggagc
taagaagaaaggatggaccatccagagactactccacctggggacccata
atcagccaccaaacccagacactattgcatatgtcagcaagattttgctg
aaaggaccctgatatagctgtctcttatgaggctatgccagtgcctggcg
aatacagaagtggatgctcacagtcagctattggatgggacacagggccc
ccaatggaggagctaaagaaagtacccaaggagctgaaggggtctgcaac
cctataggtggaacaacaatatgaactaaccagtacccccagagctcgtg
tctctagctgcatatgtagcagaagatggcctagtcggccatcattggga
agagagttcccttggtgttgcaaactttatatgcctcagtacaggggaac
gccagggccaagaagtgggagtgggtggctgggggagggtacagggaact
tttgggataacatttgaaatgtaaataaagaaaatatctaataaaaaagg
gggaaaagttgttaatttaatattgtaattttaggtactacattagtctg
tttccagttaaataaagaggaaatattctgatatttcacaataaagctgc
ccatatcagtatacaatctgaaaaagcctcagaggtagacatctagaagt
atttagtcagaataatctagatgaaacagtatgtcaattgttaatattct
gtgatttgctattcgttggctaagacaattacatatacattctcacacaa
agggaagtagttaaaacatggaatgtttttgagctggcgagccacatagg
ttttgtagctgagaatttaaaagaggagtaaacaaatcaaatatttttta
tattttatgttctatctaacacaaacagaaccatgtatgatagacaagta
tgaatgatgccaatagccagttctctaagttgagacactgttcagttttc
tgccatg
gaattctcagccttcatgatcacgtgcgtctgttggttctgtttctctca
ggaatcccaaccaatgtaaatcaacataataagaaatagacagagccatg
atatgttgaaaggatacttgatgttgaattaatatgagtttgaggcaaca
tttgcattcaagtcttatcttcttttttctctcttatttaaattttattt
aatcttttctttttacactccagacgttatccccctctcatacctccctc
tgacttttccatatcccatacctcctgtcccttgtctccaagaggctatc
cccaccccccaactgtcaccccaccagacctctccactccctgggactac
cagtctcttgagggttaggtgtatcttctctgactgaacccagacctggc
agtcctctcttgtatatgtgttgggggcctcatattagctggtgtatgct
gtctggttgatggtccagtgtctgaaagatctcaggggtccaagttaatt
gagatctaatgtcgccctcctcctcagcttcttccagtaaattgatttct
tatatgctattctgtgagtcctagatgacaaaactgaactaaaagtttag
gctacattgttggacctgggttttgcttttatctgattaaagttgtccct
tgttttatttctcttggaataagaaattataaaattcattttggaattta
caaaaacctatatagttaagaggcactaaagcttttaagagatcttggat
tttaagtgtttaaaaatgtaaagacaattggtctatgctttattttgtga
gattaacatgagatcttgagcacactaatgaaaaggatacgatttaatgt
gatgtttttgtgtgtcaaagttgacgagggtacaatttaatagttttcat
caaatgtcacaagcctggacatacatagggaagaggagatcttccctgca
gaactgcctcaatcagattctaccagatgcatgcatcactgtgaggcatt
ttcttgtttactattgaggtgagaggtccagaccaggtggtgtgcagtgt
ccacgtagccagtttactttggctatgtaagaaaggagctgatctactga
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31354620_31355720
seq2: B6Ng01-300P20.g_68_1168

seq1  GAATTCTCAGCCTTCATGATCACGTGCGTCTGTTGGTTCTGTTTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCCTTCATGATCACGTGCGTCTGTTGGTTCTGTTTCTCTCA  50

seq1  GGAATCCCAACCAATGTAAATCAACATAATAAGAAATAGACAGAGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCCAACCAATGTAAATCAACATAATAAGAAATAGACAGAGCCATG  100

seq1  ATATGTTGAAAGGATACTTGATGTTGAATTAATATGAGTTTGAGGCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGAAAGGATACTTGATGTTGAATTAATATGAGTTTGAGGCAACA  150

seq1  TTTGCATTCAAGTCTTATCTTCTTTTTTCTCTCTTATTTAAATTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCAAGTCTTATCTTCTTTTTTCTCTCTTATTTAAATTTTATTT  200

seq1  AATCTTTTCTTTTTACACTCCAGACGTTATCCCCCTCTCATACCTCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTCTTTTTACACTCCAGACGTTATCCCCCTCTCATACCTCCCTC  250

seq1  TGACTTTTCCATATCCCATACCTCCTGTCCCTTGTCTCCAAGAGGCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTCCATATCCCATACCTCCTGTCCCTTGTCTCCAAGAGGCTATC  300

seq1  CCCACCCCCCAACTGTCACCCCACCAGACCTCTCCACTCCCTGGGACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCCAACTGTCACCCCACCAGACCTCTCCACTCCCTGGGACTAC  350

seq1  CAGTCTCTTGAGGGTTAGGTGTATCTTCTCTGACTGAACCCAGACCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTTGAGGGTTAGGTGTATCTTCTCTGACTGAACCCAGACCTGGC  400

seq1  AGTCCTCTCTTGTATATGTGTTGGGGGCCTCATATTAGCTGGTGTATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTCTTGTATATGTGTTGGGGGCCTCATATTAGCTGGTGTATGCT  450

seq1  GTCTGGTTGATGGTCCAGTGTCTGAAAGATCTCAGGGGTCCAAGTTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTGATGGTCCAGTGTCTGAAAGATCTCAGGGGTCCAAGTTAATT  500

seq1  GAGATCTAATGTCGCCCTCCTCCTCAGCTTCTTCCAGTAAATTGATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTAATGTCGCCCTCCTCCTCAGCTTCTTCCAGTAAATTGATTTCT  550

seq1  TATATGCTATTCTGTGAGTCCTAGATGACAAAACTGAACTAAAAGTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTATTCTGTGAGTCCTAGATGACAAAACTGAACTAAAAGTTTAG  600

seq1  GCTACATTGTTGGACCTGGGTTTTGCTTTTATCTGATTAAAGTTGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTGTTGGACCTGGGTTTTGCTTTTATCTGATTAAAGTTGTCCCT  650

seq1  TGTTTTATTTCTCTTGGAATAAGAAATTATAAAATTCATTTTGGAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTCTCTTGGAATAAGAAATTATAAAATTCATTTTGGAATTTA  700

seq1  CAAAAACCTATATAGTTAAGAGGCACTAAAGCTTTTAAGAGATCTTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCTATATAGTTAAGAGGCACTAAAGCTTTTAAGAGATCTTGGAT  750

seq1  TTTAAGTGTTTAAAAATGTAAAGACAATTGGTCTATGCTTTATTTTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGTTTAAAAATGTAAAGACAATTGGTCTATGCTTTATTTTGTGA  800

seq1  GATTAACATGAGATCTTGAGCACACTAATGAAAAGGATACGATTTAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACATGAGATCTTGAGCACACTAATGAAAAGGATACGATTTAATGT  850

seq1  GATGTTTTTGTGTGTCAAAGTTGACGAGGGTACAATTTAATAGTTTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTGTGTGTCAAAGTTGACGAGGGTACAATTTAATAGTTTTCAT  900

seq1  CAAATGTCACAAGCCTGGACATACATA-GGAAGAGGAGATCTTCCCTGCA  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAATGTCACAAGCCTGGACATACATAGGGAAGAGGAGATCTTCCCTGCA  950

seq1  GAACTGCCTCAATCAGATTCTACCAGATGCATGCATCACTGTGAGGCATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCCTCAATCAGATTCTACCAGATGCATGCATCACTGTGAGGCATT  1000

seq1  TTCTTGTTTACTAATTGAGGTGAGAGGTCCAGACCAG--TGTGTGCAGTG  1047
      |||||||||||| ||||||||||||||||||||||||   ||||||||||
seq2  TTCTTGTTTACT-ATTGAGGTGAGAGGTCCAGACCAGGTGGTGTGCAGTG  1049

seq1  T-CACGTAGGCAGGTTAACTTTGGCTATGTAAGAAAAGGAGCTGATCTAC  1096
      | ||||||| || ||| |||||||||||||||| ||||||||||||||| 
seq2  TCCACGTAGCCA-GTTTACTTTGGCTATGTAAG-AAAGGAGCTGATCTA-  1096

seq1  CTGAT  1101
      |||||
seq2  CTGAT  1101