BAC Information

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BAC

Clone NameB6Ng01-301B18
Chromosome18 (Build37)8 (Build37)
Map Location 58,064,194 - 58,065,39190,963,649 - 90,963,692
singlet/doubletsingletsinglet
Overlap geneSlc12a2
Upstream geneMarch3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, 9330166H04Rik
Downstream geneFbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301B18.bB6Ng01-301B18.g
ACCGA095508GA095509
length1,20596
definitionB6Ng01-301B18.b B6Ng01-301B18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,064,194 - 58,065,391)(90,963,649 - 90,963,692)
sequence
gaattcattgctttgttaagctagttattgttattattctttaatattaa
ataaagttttaaagaattgggaggcccagacaatcatttgaaccctattc
tacatgtatctaattcattttcaaacaaaattataagttttgaatttatt
agtttcatgatcagatgtttccatgcatattctgtaaaaatactgtaatt
ttgccacatttaaaaattgttttgttcagaagtagcaacagaactctatt
ttcaagttttatagctatctcttagtgtaattttgaaatttaactgaaca
aaagctagaaatgctaattgatgggccaaattgccttttaaaaatgattt
tggatatgatataatcttttttcttattctttaattttgtttacaatcta
gtctttatccccctcccagtccttcctctgactgtctcacaccccatacc
tcttctcctatataacatattcttaatacataattcttaaatttgtttga
gaaaacagctatgtatataagcatacttgattaacaaaattatgtttccc
taaaattttcaaggatgcttacattatgtagctgaactaaataaaatttg
tttttaatttaactaatggaataacattatgttccaatttttaaaataat
ttgttgccaaggagacatgtctgacatgtctgaccctctagttgttggac
ctcatgctatcttctttccacctgtgctaagtaagcagtgcctgcccctc
tgctgcgcaggagggccagtgaaagcgctgtaccatggttttgtgacgag
ttcagaccaacagaaactttatcacccagaaatgtcaggcatagccacac
tgtgtgatcctcttgctcaggtgcagccagccacactgtgtgtgaccctc
atgctcagtagacagaagcaggattcttcccttaagtgtgcccagcccag
cataggcagcgactgtcttcccaagaagccaggcacaggaaaggacatga
aagtgtgactgcacgtgagctgatggagtccagggctcttgtctcctctc
cagtgctgaaggtctcagtgcatggaggagggaaggtgctttgcagcatt
gggttgaaagaattagagggtaaaaaggcaagcaaggtgtttcggtagcc
caatctctaggcaatgaagctgtacaggatttcctggcatttgtgtggga
aacac

aatgccaacctgagagacatagtgaggtctgtttccagtaaaacaaagcc
aaaaaagaaaagaaggaaggaaggagggagggagggaggcagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58064194_58065391
seq2: B6Ng01-301B18.b_43_1247

seq1  GAATTCATTGCTTTGTTAAGCTAGTTATTGTTATTATTCTTTAATATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTTTGTTAAGCTAGTTATTGTTATTATTCTTTAATATTAA  50

seq1  ATAAAGTTTTAAAGAATTGGGAGGCCCAGACAATCATTTGAACCCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTTAAAGAATTGGGAGGCCCAGACAATCATTTGAACCCTATTC  100

seq1  TACATGTATCTAATTCATTTTCAAACAAAATTATAAGTTTTGAATTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATCTAATTCATTTTCAAACAAAATTATAAGTTTTGAATTTATT  150

seq1  AGTTTCATGATCAGATGTTTCCATGCATATTCTGTAAAAATACTGTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATGATCAGATGTTTCCATGCATATTCTGTAAAAATACTGTAATT  200

seq1  TTGCCACATTTAAAAATTGTTTTGTTCAGAAGTAGCAACAGAACTCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACATTTAAAAATTGTTTTGTTCAGAAGTAGCAACAGAACTCTATT  250

seq1  TTCAAGTTTTATAGCTATCTCTTAGTGTAATTTTGAAATTTAACTGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTTATAGCTATCTCTTAGTGTAATTTTGAAATTTAACTGAACA  300

seq1  AAAGCTAGAAATGCTAATTGATGGGCCAAATTGCCTTTTAAAAATGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGAAATGCTAATTGATGGGCCAAATTGCCTTTTAAAAATGATTT  350

seq1  TGGATATGATATAATCTTTTTTCTTATTCTTTAATTTTGTTTACAATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGATATAATCTTTTTTCTTATTCTTTAATTTTGTTTACAATCTA  400

seq1  GTCTTTATCCCCCTCCCAGTCCTTCCTCTGACTGTCTCACACCCCATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATCCCCCTCCCAGTCCTTCCTCTGACTGTCTCACACCCCATACC  450

seq1  TCTTCTCCTATATAACATATTCTTAATACATAATTCTTAAATTTGTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTATATAACATATTCTTAATACATAATTCTTAAATTTGTTTGA  500

seq1  GAAAACAGCTATGTATATAAGCATACTTGATTAACAAAATTATGTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCTATGTATATAAGCATACTTGATTAACAAAATTATGTTTCCC  550

seq1  TAAAATTTTCAAGGATGCTTACATTATGTAGCTGAACTAAATAAAATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTCAAGGATGCTTACATTATGTAGCTGAACTAAATAAAATTTG  600

seq1  TTTTTAATTTAACTAATGGAATAACATTATGTTCCAATTTTTAAAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTAACTAATGGAATAACATTATGTTCCAATTTTTAAAATAAT  650

seq1  TTGTTGCCAAGGAGACATGTCTGACATGTCTGACCCTCTAGTTGTTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCAAGGAGACATGTCTGACATGTCTGACCCTCTAGTTGTTGGAC  700

seq1  CTCATGCTATCTTCTTTCCACCTGTGCTAAGTAAGCAGTGCCTGCCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTATCTTCTTTCCACCTGTGCTAAGTAAGCAGTGCCTGCCCCTC  750

seq1  TGCTGCGCAGGAGGGCCAGTGAAAGCGCTGTACCATGGTTTTGTGACGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGCAGGAGGGCCAGTGAAAGCGCTGTACCATGGTTTTGTGACGAG  800

seq1  TTCAGACCAACAGAAACTTTATCACCCAGAAATGTCAGGCATAGCCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCAACAGAAACTTTATCACCCAGAAATGTCAGGCATAGCCACAC  850

seq1  TGTGTGATCCTCTTGCTCAGGTGCAGCCAGCCACACTGTGTGTGACCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATCCTCTTGCTCAGGTGCAGCCAGCCACACTGTGTGTGACCCTC  900

seq1  ATGCTCAGTAGACAGAAGCAGGATTC-TCCCTTAAGTGTGCCCAGCCAAG  949
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  ATGCTCAGTAGACAGAAGCAGGATTCTTCCCTTAAGTGTGCCCAGCCCAG  950

seq1  CATAGGCAGCGACTGTCTCCCAAAGAAGCCAGGCACAGG-AAGGACATGA  998
      |||||||||||||||||| || ||||||||||||||||| ||||||||||
seq2  CATAGGCAGCGACTGTCTTCCCAAGAAGCCAGGCACAGGAAAGGACATGA  1000

seq1  AAGTGTGACTGCACGTGAGCTGATGGAGTCCAGGGCTCTTGTCT-CTCTC  1047
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTGTGACTGCACGTGAGCTGATGGAGTCCAGGGCTCTTGTCTCCTCTC  1050

seq1  CAGTGCTGAAAGGTCTCAGGTGCATGGAGAGGGAAAGGTGCTTTTGCCAG  1097
      |||||||| ||||||||| ||||||||||  || ||||||||||   |||
seq2  CAGTGCTG-AAGGTCTCA-GTGCATGGAGGAGGGAAGGTGCTTT--GCAG  1096

seq1  CAT--GGGTGAAAGA--TAGAGGGGAAAAAAAGCAGCCAAGTG-TTCGGT  1142
      |||  || |||||||  ||||||| |||||    ||| | ||| ||||||
seq2  CATTGGGTTGAAAGAATTAGAGGGTAAAAAGGCAAGCAAGGTGTTTCGGT  1146

seq1  AGCCCA---TCTAGGCATTGAAATGTTTGTACAAGGTTTTCCT-GCATTT  1188
      ||||||   |||||||| ||||     ||||| ||| |||||| ||||||
seq2  AGCCCAATCTCTAGGCAATGAA---GCTGTAC-AGGATTTCCTGGCATTT  1192

seq1  GT---GGAAACAC  1198
      ||   ||||||||
seq2  GTGTGGGAAACAC  1205


seq1: chr8_90963649_90963692
seq2: B6Ng01-301B18.g_125_167 (reverse)

seq1  CTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCTTTTCTTT  44
      |||||| ||||||||||||||| |||||||||||||||||||||
seq2  CTCCCTGCCTCCCTCCCTCCCT-CCTTCCTTCCTTCTTTTCTTT  43


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