BAC Information

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BAC

Clone NameB6Ng01-301D02
Chromosome18 (Build37)
Map Location 78,486,204 - 78,487,401
singlet/doubletsinglet
Overlap geneSlc14a2
Upstream geneSt8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1
Downstream geneEG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301D02.bB6Ng01-301D02.g
ACCGA095570GA095571
length1,1901,042
definitionB6Ng01-301D02.b B6Ng01-301D02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctaggattactctggcaaagaagctatttttattcctttcagc
tggacaagaatgactgtaagccatgaggggtcactgttgggaagagaata
gttgtacaggcagcgctatacaatcctaagaatcctcccttgcataactc
aagtctttaccgtttcaatggatgctccctttctgaacctgttccccata
gggagaagcgcttcacaaataccttccacttccctttttagtgcaatgat
acttttgtagaacaattagcatttaaatccccctcccctgtatttttgct
tattgtccttgaacttgtgcatctattttggtgctatctgttctcacagt
atgaaaaaaaacagccctgtagtgcaccttgaattccactgtctctcagc
acatgtccagaaacaaaatggctgccaataaattacacattccccataca
tgtgaatgtatacaacagttcattgagttgttcatctatttgtgggtcac
cgtgcatctaggataccagtggagaattcagtaccacagtcaggagcaaa
aatctaaatatgtgaaaatacttcttgagcagtcctacaagacactgagc
acaatgcataacaaataggtcagttgtgtttcagagtccttggaaccatc
acgggtgacataagcatattttttaccaccattatttaataaaagctttc
ttgtgtgctgaggccaagggctttggcacatacgcagtacaagtcattcg
acttaacagtcagtgacaaagagaaacgaagccaaggaacatctaggctg
tagatctctaaaggattttggaagcaagagaagaaaggacattgttcaag
aaacatggattatatcaatagcgctgcagccatgcattttaaactcattc
cagttcatcctttcctaggagaggaagacaaggaaatgacatcagtgtgg
gtcttatacagtccttatttaatttgcttgcttttgtaattgactgctac
atatttgagcatggaatccactagtctgtgatctggtatatcaactttta
attattattatttattatttatttaggaactgtgttggggggggacagga
agggggcaatgggcctgatggtaaaaaaaaaaaacaaacgatgactgacc
ttagagaacgccaaccaatggacttaccccacttttgaga

gaattctacagcatgcttttcatctgcaaagactacagtagtgcagaata
atacttggcacttgcatggaaaatagacagagatcacaaccttatccaca
tgatctgtggacattcagagggtaagttaaggacacagaagcacataaat
atatttttgttaatgatagactaggaacccaaagggaggttcctatgctt
ccagatgtgggatggctcctttgagaaagcatgctgacgtattggaagca
tctaatggagatttctttttaatattgaaaatagagtcaaagaaaaagaa
gtatattattaaactattacaatataaatgtgtacaaataaatagacagc
aattaaagaaaaaattggagttgaccaattgagcggctacaccttttcat
ttcaagttgtttctgagtttttaatttattttttttgttgttttttttta
aaataggtatttatttcatttacatttccaatgctatcccaaaagtcccc
ccattcacccactcccacttcttggccctggtattcacctgtactgaggc
agataaagtttgcacgaccaatgggcctctctttccaatgatggccgcct
aggccatcttctgatatatatgcagctagagacatgagctctgggggtac
tggttagttcatattgtttgttgttccacctatagagttgcagatccccc
cagctccttgggtactttctctagctcctccattgcgggccctgtgatcc
atccaatagctgactgtgagcatccacttctgtgtttgctaggccctggc
atagtcccacaagagacagctatattggagtcctttcagtaaaatcttgc
tagtgtatgcaatggtgtcagcgtttggaaagctgattatgggatggatc
tccagatatggcaatctctagatggtccatcctttatctcagctccaaac
tttgtctctgtaactccttcatgggtgtttgtttccaattctaagaagga
caagtgtccaccacttttgtcattgttcttgagtttcatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_78486204_78487401
seq2: B6Ng01-301D02.b_44_1233

seq1  GAATTCTCTAGGATTACTCTGGCAAAGAAGCTATTTTTATTCCTTTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGATTACTCTGGCAAAGAAGCTATTTTTATTCCTTTCAGC  50

seq1  TGGACAAGAATGACTGTAAGCCATGAGGGGTCACTGTTGGGAAGAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGAATGACTGTAAGCCATGAGGGGTCACTGTTGGGAAGAGAATA  100

seq1  GTTGTACAGGCAGCGCTATACAATCCTAAGAATCCTCCCTTGCATAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACAGGCAGCGCTATACAATCCTAAGAATCCTCCCTTGCATAACTC  150

seq1  AAGTCTTTACCGTTTCAATGGATGCTCCCTTTCTGAACCTGTTCCCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTACCGTTTCAATGGATGCTCCCTTTCTGAACCTGTTCCCCATA  200

seq1  GGGAGAAGCGCTTCACAAATACCTTCCACTTCCCTTTTTAGTGCAATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGCGCTTCACAAATACCTTCCACTTCCCTTTTTAGTGCAATGAT  250

seq1  ACTTTTGTAGAACAATTAGCATTTAAATCCCCCTCCCCTGTATTTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTAGAACAATTAGCATTTAAATCCCCCTCCCCTGTATTTTTGCT  300

seq1  TATTGTCCTTGAACTTGTGCATCTATTTTGGTGCTATCTGTTCTCACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCCTTGAACTTGTGCATCTATTTTGGTGCTATCTGTTCTCACAGT  350

seq1  ATGAAAAAAAACAGCCCTGTAGTGCACCTTGAATTCCACTGTCTCTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAACAGCCCTGTAGTGCACCTTGAATTCCACTGTCTCTCAGC  400

seq1  ACATGTCCAGAAACAAAATGGCTGCCAATAAATTACACATTCCCCATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCCAGAAACAAAATGGCTGCCAATAAATTACACATTCCCCATACA  450

seq1  TGTGAATGTATACAACAGTTCATTGAGTTGTTCATCTATTTGTGGGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGTATACAACAGTTCATTGAGTTGTTCATCTATTTGTGGGTCAC  500

seq1  CGTGCATCTAGGATACCAGTGGAGAATTCAGTACCACAGTCAGGAGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATCTAGGATACCAGTGGAGAATTCAGTACCACAGTCAGGAGCAAA  550

seq1  AATCTAAATATGTGAAAATACTTCTTGAGCAGTCCTACAAGACACTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAATATGTGAAAATACTTCTTGAGCAGTCCTACAAGACACTGAGC  600

seq1  ACAATGCATAACAAATAGGTCAGTTGTGTTTCAGAGTCCTTGGAACCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCATAACAAATAGGTCAGTTGTGTTTCAGAGTCCTTGGAACCATC  650

seq1  ACGGGTGACATAAGCATATTTTTTACCACCATTATTTAATAAAAGCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGACATAAGCATATTTTTTACCACCATTATTTAATAAAAGCTTTC  700

seq1  TTGTGTGCTGAGGCCAAGGGCTTTGGCACATACGCAGTACAAGTCATTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCTGAGGCCAAGGGCTTTGGCACATACGCAGTACAAGTCATTCG  750

seq1  ACTTAACAGTCAGTGACAAAGAGAAACGAAGCCAAGGAACATCTAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACAGTCAGTGACAAAGAGAAACGAAGCCAAGGAACATCTAGGCTG  800

seq1  TAGATCTCT-AAGGATTTTGGAAGCAAGAGAAGAAAGGACATTGTTCAAG  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCTAAAGGATTTTGGAAGCAAGAGAAGAAAGGACATTGTTCAAG  850

seq1  AAACATGGATTATATCAATAGCGCTGCAGCCATGCATTTTAAACTCATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGATTATATCAATAGCGCTGCAGCCATGCATTTTAAACTCATTC  900

seq1  CAGTTCATCC-TTCCTAGGAGAGGAAGACAAGGAAATGACATCAGTGTGG  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATCCTTTCCTAGGAGAGGAAGACAAGGAAATGACATCAGTGTGG  950

seq1  GTCTTATACAGTCCTTATTTAATTTGCTTGCTTTTGTAATTGACTGCTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATACAGTCCTTATTTAATTTGCTTGCTTTTGTAATTGACTGCTAC  1000

seq1  ATATTTGAGCATGGAATCCACTAGTTCTGTGATCTTGGTATTATCAACTT  1048
      |||||||||||||||||||||||| ||||||||| ||||| |||||||||
seq2  ATATTTGAGCATGGAATCCACTAG-TCTGTGATC-TGGTA-TATCAACTT  1047

seq1  TTATTTATTTATTTATTTATTTATTTATTTAGGAACTGTGTTGGGGGGGA  1098
      ||| |||||   ||||||| ||||||||||||||||||||||||||||| 
seq2  TTAATTATT--ATTATTTA-TTATTTATTTAGGAACTGTGTTGGGGGGGG  1094

seq1  CCAGGAAGGGGGCAAT-GGCTGGATTGTAAAAAAAAAAAAAACAAAAAGG  1147
       ||||||||||||||| |||  ||| |||||||||||||    | ||| |
seq2  ACAGGAAGGGGGCAATGGGCCTGATGGTAAAAAAAAAAA----ACAAACG  1140

seq1  ATGGACCAGACATTAAGAGAACAGCCAACCAAT-GACTACCCCAAC--TT  1194
      |||   | ||| || ||||||| |||||||||| ||||  ||| ||  ||
seq2  ATG--ACTGACCTT-AGAGAAC-GCCAACCAATGGACTTACCCCACTTTT  1186

seq1  GAGA  1198
      ||||
seq2  GAGA  1190


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