BAC Information

Click to search

BAC

Clone NameB6Ng01-301H15
Chromosome18 (Build37)
Map Location 27,491,709 - 27,492,943
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301H15.bB6Ng01-301H15.g
ACCGA095778GA095779
length8671,134
definitionB6Ng01-301H15.b B6Ng01-301H15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaactcttaggcaaatggatggaactagaaaatatcatcct
gagtgaggtaacccagtcagaaaagaaaacacatggtatgcactcatgga
taagtggatattagcccaaaagatcagattacccaagatacaattcatag
actgcatgacaccagtgtaaaggaatgccaggacagggaaacaggagtgg
gtggtttggggagaaaaaaaagggaaatgggagaggaagttttcagaggg
aaaactaggaaaggggataaaatttgaaatgtaaataaagaaaatatcta
ataatcaataaattaataaataaattaataaataaatttatttttaataa
aaggggggtacaaaatattcacgagaggaaataaggagaaaaagtgtgga
gcagaaactgaaggaaatgccatccagtgactgccccacctggggatcca
tcccatataaagtcaccaaacccagacactattgtggatgccaatgagtg
cttggtgatagaagtctgatatggctgtctgctaagaggttctgccagat
cctgacaaatacagaggtggatgctctcagccaaccattggaatgagcac
ggagtccctaataaaggagttagaggaaggagtgaaggagctgaagaggt
ttgcaaccacatagaaagaacaacaacatcaaccaaccagacccctcaga
gctcccagggactaaactaccaaccaaacattacacatggagcgacccat
ggccacagctgcatatgtagcagaagatgaccttgtttagacatcaatgg
tccttggtcctgtgaaggcttgatgtccagttgtagggtgacaggagttg
ggtagattggtgggttg

gaattcagactctgttaatatcacaattgagtagtgaatgttcttagcag
ttcagccatgtcttgaaccattatcaggctcttaatcactgatattgagt
atgagctatgacccttcctttacacacttctatgtacccacttgttcagc
tcagtaacagtcatgatgtacaccacccacaatgtttccagagtacaaag
ataattacgcttcttaaaaattgactgagccgttgtaaagagagttgtag
gcaaaagtaactatatatatatacatatatatatatatatatactgaaaa
attagttttctttctttaagactatacacacacaaatacacacacagcaa
caacaacaatgacaactttatttttcaagaataagaccacggtaatgaat
ttgaaagacaacattgggcaataaggaagtgggggaagaattgggacagc
aattaaattatattaatttcaaaaattaaggaaacttaatttgctgggaa
ctagggctttcaataaactcgtaggcagcccaggcaatctcagtgataaa
catagttttggagattgacatgtagcttataagtgtaaagagaaagaaca
agaaatgtctttactacagaacaaaattaatgaaaatctaattaaaattc
tagaggaaaattaccttcagttgaagctgccaatatgtagacagacaaac
tccatgataccacagtcaaaagaaatatgagttgacgagaagaggatcag
aagggaaaataatggggaccctagatataactcctggtcatggtaattat
gatgaaacctctgggtttctatcttccatgtcatggagacaatatgggca
gcatgtgtttgcactttggtttctccactaaaaacagttttttcccccat
ccatcttatgtacagatggacaaatgtaccatgtacctctttctgagtgt
cttttgtcctgcacctacagacagcttttggaggacctcatctagttacc
ttagatgctctttgaccattcacaaccaatatcataaagggatatcctgt
gtacaagttaggacttattaggattctaacctaaggtacaacaactacct
tctccagatggaattgtttgaaccaagacaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27491709_27492943
seq2: B6Ng01-301H15.g_66_1199 (reverse)

seq1  ACCTTGTCTTAGGCTGAAGCTGAAGATCAGTAGTAGGATGCATGCTTGGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAAGTACTACATTGGATCCCTTCTATGAAAGGAAGAAAAGTTACC-TG  99
                                                  ||| ||
seq2  --------------------------------------------ACCTTG  6

seq1  TCTTTGTGTTCAAAACATATCCATCTTGGAG-AGGTAGTTGTGTGTACCT  148
      ||||   |||| |||||  |||||| ||||| |||||||||| |||||||
seq2  TCTT--GGTTC-AAACAATTCCATC-TGGAGAAGGTAGTTGT-TGTACCT  51

seq1  TAGTTTAGAATCTTATTATGTTTCTTAACTTTGTACACAGGATATCCCTT  198
      ||| |||||||| || || |  || |||| ||||||||||||||||||||
seq2  TAGGTTAGAATCCTAATAAG--TCCTAAC-TTGTACACAGGATATCCCTT  98

seq1  TATGATATTG--TGTGAATGGGTCAAAGAGCATCTAAGTTAACTAGATGA  246
      ||||||||||  ||||||| |||||||||||||||||| |||||||||||
seq2  TATGATATTGGTTGTGAAT-GGTCAAAGAGCATCTAAGGTAACTAGATGA  147

seq1  GGTTCCTCCAAAAGCTGTCTGTAGGTGCAGGACAAAAGACACTCAGAAAG  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TCCTCCAAAAGCTGTCTGTAGGTGCAGGACAAAAGACACTCAGAAAG  196

seq1  AGGTACATGGGTACATTTGTCCATCTGTACATAAGATGGATGGGGGAAAA  346
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAT-GGTACATTTGTCCATCTGTACATAAGATGGATGGGGGAAAA  245

seq1  AACTGTTTTTAGTGGAGAAACCAAAGTGCAAACACATGCTGCCCATATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTTTAGTGGAGAAACCAAAGTGCAAACACATGCTGCCCATATTG  295

seq1  TCTCCATGACATGGAAGATAGAAACCCAGAGGTTTCATCATAATTACCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGACATGGAAGATAGAAACCCAGAGGTTTCATCATAATTACCAT  345

seq1  GACCAGGAGTTATATCTAGGGTCCCCATTATTTTCCCTTCTGATCCTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAGTTATATCTAGGGTCCCCATTATTTTCCCTTCTGATCCTCTT  395

seq1  CTCGTCAACTCATATTTCTTTTGACTGTGGTATCATGGAGTTTGTCTGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCAACTCATATTTCTTTTGACTGTGGTATCATGGAGTTTGTCTGTC  445

seq1  TACATATTGGCAGCTTCAACTGAAGGTAATTTTCCTCTAGAATTTTAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGGCAGCTTCAACTGAAGGTAATTTTCCTCTAGAATTTTAATT  495

seq1  AGATTTTCATTAATTTTGTTCTGTAGTAAAGACATTTCTTGTTCTTTCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCATTAATTTTGTTCTGTAGTAAAGACATTTCTTGTTCTTTCTC  545

seq1  TTTACACTTATAAGCTACATGTCAATCTCCAAAACTATGTTTATCACTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTTATAAGCTACATGTCAATCTCCAAAACTATGTTTATCACTGA  595

seq1  GATTGCCTGGGCTGCCTACGAGTTTATTGAAAGCCCTAGTTCCCAGCAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCTGGGCTGCCTACGAGTTTATTGAAAGCCCTAGTTCCCAGCAAA  645

seq1  TTAAGTTTCCTTAATTTTTGAAATTAATATAATTTAATTGCTGTCCCAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCCTTAATTTTTGAAATTAATATAATTTAATTGCTGTCCCAAT  695

seq1  TCTTCCCCCACTTCCTTATTGCCCAATGTTGTCTTTCAAATTCATTACCG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCCACTTCCTTATTGCCCAATGTTGTCTTTCAAATTCATTACCG  745

seq1  TGGTCTTATTCTTGAAAAATAAAGTTGTCATTGTTGTTGTTGCTGTGTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTATTCTTGAAAAATAAAGTTGTCATTGTTGTTGTTGCTGTGTGT  795

seq1  GTATTTGTGTGTGTATAGTCTTAAAGAAAGAAAACTAATTTTTCAGTATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTGTGTGTATAGTCTTAAAGAAAGAAAACTAATTTTTCAGTATA  845

seq1  TATATATATATATATGTATATATATATAGTTACTTTTGCCTACAACTCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATGTATATATATATAGTTACTTTTGCCTACAACTCTC  895

seq1  TTTACAACGGCTCAGTCAATTTTTAAGAAGCGTAATTATCTTTGTACTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACGGCTCAGTCAATTTTTAAGAAGCGTAATTATCTTTGTACTCT  945

seq1  GGAAACATTGTGGGTGGTGTACATCATGACTGTTACTGAGCTGAACAAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATTGTGGGTGGTGTACATCATGACTGTTACTGAGCTGAACAAGT  995

seq1  GGGTACATAGAAGTGTGTAAAGGAAGGGTCATAGCTCATACTCAATATCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACATAGAAGTGTGTAAAGGAAGGGTCATAGCTCATACTCAATATCA  1045

seq1  GTGATTAAGAGCCTGATAATGGTTCAAGACATGGCTGAACTGCTAAGAAC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAAGAGCCTGATAATGGTTCAAGACATGGCTGAACTGCTAAGAAC  1095

seq1  ATTCACTACTCAATTGTGATATTAACAGAGTCTGAATTC  1235
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTACTCAATTGTGATATTAACAGAGTCTGAATTC  1134


| Home | SequenceCutter | Blast | Download |