BAC Information

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BAC

Clone NameB6Ng01-301L24
Chromosome18 (Build37)
Map Location 88,972,786 - 89,093,020
singlet/doubletdoublet
Overlap geneLOC623208, Socs6
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
Downstream geneRttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301L24.bB6Ng01-301L24.g
ACCGA095981GA095982
length1,0661,078
definitionB6Ng01-301L24.b B6Ng01-301L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,091,952 - 89,093,020)(88,972,786 - 88,973,545)
sequence
gaattcctaaggacttcactttctcaaaacataaaagttatcaggagcca
ggttctctgagtgttctctgaagttatgccttgattatgtatgtctgttg
tatctattgataaacagcatgcatacacattttaatgatttttttcaata
ttgctatatatgtgtatatatatataattctatattattttaaatacctg
cttctctttctaaaacacacattttctttcaaatttgtgataatgtagcc
cattgtaaatattttgtatattgacccttctaacaatattctcaggggtg
ggggtattgttagacagtagaaaattcactcattaactttctctccttcc
cctcatctacattcatcatcacaccagtgaacacagtggaactatcctaa
gcattacaatctgaagagctttcctgttgtcagccagagcagtaacaaac
aaatggttgcaaacagttggcttttgcaagctttctactgcaagatgcac
acagctcttaagacaaagagccaatgacacagggatgtaactgacctcct
gagtaatcttcctttgattttttttttttttctgcttcacagcatgctgc
ttcctggaagtttagggtctctctccattccaatttgctttcttttgcca
tgataaacaccatgatcaaaagaaacttgagaaggagtttatttcacttt
acatttccaggtgatagaccatgattgagggaagtcaggataagcaagaa
ctggaacagaaaccatagaggaagagtgtttcctatctcactcgctctgg
ctggtgctaggccaactttctttatgcaacccaagatcgcatgcccagag
gtaacacacctcactgggctggaccctccccacaaccatctacattcaag
acaattcttcacagacttggctaaagaccagtctgattcaagtaatctga
gactccctctttgagttcacctttgttgtataagttgcatgcagtagcat
gaaacactgacaacacattagatccacccagaaagcttttgacttattca
cccctcatgtagctga
gaattctttagtacagatgttttattccaaacaatgactctaattgaggg
gtaaagtgatgaatcagagattggtttgacagaatgagtcaaagatagga
tacctccaactctcacaagaagctatttaagagttgtgcaaggagagagt
gtgagttaggagtcatctctattctttcaattgggagtcagtgtagttat
tccagtttagtgcacatcatcagaggcaactaaagccagataataagtag
ccagaaaattagaacaaattgctggagttagtttgaagcagagcaattca
atgagaagctgagagaagccagattgaatcagtcagcttggagagagttc
aagccagaacactgagttgaaccagtcagttaagggttcaagattccaga
aagaacaagaaagggtgagtttactcagcagtaagcttccagagggacaa
caattacatcagacaaataaaagatacttttacaagtggagggttttcag
tgtaagacctgcatgagccagtcaaaattccaacatggatggaagagggt
cctttaatgcccactccttttagaggagctagtggaagttaatggagcca
gttaatcgccgttggagacattgcccactggcaagctgatcatgagctat
tggattgctacaaaccaggcaacactaactggacttattaggctgttaat
aacaataaaaaaagaagacaaagttgggagtgagcaatgattgaggcatt
atgaaaagctaaagggaggtagcaatagataggtagtatcaaaatatact
gcaaaaatgaagatatttttaaagaatttttcaaaagatattttcaaaaa
ttgtttcaaagaataaaaatatttttaaaaacagtattatttttaagcaa
gtggctttttgggtaagccattctagaggaaagcctggcacacttttaaa
ctaaaaatgtctacaaacagtcctgtctcagtagggtttctatgctgcat
gaaacatcaaaacaagatggggaggaatgcttatcatcttacacctttgg
atcatatctatcatcagaagaaactcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89091952_89093020
seq2: B6Ng01-301L24.b_45_1110 (reverse)

seq1  TCAGCCTACATGA-GGGTGAATAGTCCAAAAGGCCTTTCTGGGT-GATCT  48
      |||| |||||||| |||||||||   ||||||  |||||||||| |||||
seq2  TCAG-CTACATGAGGGGTGAATAAGTCAAAAG--CTTTCTGGGTGGATCT  47

seq1  AATGTGTTGTCAGTGTTTCATGCTACTGCCATGGCAACTTATACAACCAA  98
      |||||||||||||||||||||||||||| ||| ||||||||||||| |||
seq2  AATGTGTTGTCAGTGTTTCATGCTACTG-CAT-GCAACTTATACAA-CAA  94

seq1  AGGTGAACTCAAAGAGGGAGTCTCAGATTACTTGAATCAGACTGGTCTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACTCAAAGAGGGAGTCTCAGATTACTTGAATCAGACTGGTCTTT  144

seq1  AGCCAAGTCTGTGAAGAATTGTCTTGATTGTAGATGGTTGT-GGGAGGGT  197
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AGCCAAGTCTGTGAAGAATTGTCTTGAATGTAGATGGTTGTGGGGAGGGT  194

seq1  CCAGCCCAGTGAGGTGTGTTACCTCTGGGCATGCGATCTTGGGTTGCATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAGTGAGGTGTGTTACCTCTGGGCATGCGATCTTGGGTTGCATA  244

seq1  AAGAAAGTTGGCCTAGCACCAGCCAGAGCGAGTGAGATAGGAAACACTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTGGCCTAGCACCAGCCAGAGCGAGTGAGATAGGAAACACTCT  294

seq1  TCCTCTATGGTTTCTGTTCCAGTTCTTGCTTATCCTGACTTCCCTCAATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATGGTTTCTGTTCCAGTTCTTGCTTATCCTGACTTCCCTCAATC  344

seq1  ATGGTCTATCACCTGGAAATGTAAAGTGAAATAAACTCCTTCTCAAGTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTATCACCTGGAAATGTAAAGTGAAATAAACTCCTTCTCAAGTTT  394

seq1  CTTTTGATCATGGTGTTTATCATGGCAAAAGAAAGCAAATTGGAATGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATCATGGTGTTTATCATGGCAAAAGAAAGCAAATTGGAATGGAG  444

seq1  AGAGACCCTAAACTTCCAGGAAGCAGCATGCTGTGAAGCAGAAAAAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCTAAACTTCCAGGAAGCAGCATGCTGTGAAGCAGAAAAAAAAA  494

seq1  AAAAATCAAAGGAAGATTACTCAGGAGGTCAGTTACATCCCTGTGTCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAAGGAAGATTACTCAGGAGGTCAGTTACATCCCTGTGTCATT  544

seq1  GGCTCTTTGTCTTAAGAGCTGTGTGCATCTTGCAGTAGAAAGCTTGCAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTGTCTTAAGAGCTGTGTGCATCTTGCAGTAGAAAGCTTGCAAA  594

seq1  AGCCAACTGTTTGCAACCATTTGTTTGTTACTGCTCTGGCTGACAACAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTGTTTGCAACCATTTGTTTGTTACTGCTCTGGCTGACAACAGG  644

seq1  AAAGCTCTTCAGATTGTAATGCTTAGGATAGTTCCACTGTGTTCACTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTTCAGATTGTAATGCTTAGGATAGTTCCACTGTGTTCACTGGT  694

seq1  GTGATGATGAATGTAGATGAGGGGAAGGAGAGAAAGTTAATGAGTGAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATGAATGTAGATGAGGGGAAGGAGAGAAAGTTAATGAGTGAATT  744

seq1  TTCTACTGTCTAACAATACCCCCACCCCTGAGAATATTGTTAGAAGGGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGTCTAACAATACCCCCACCCCTGAGAATATTGTTAGAAGGGTC  794

seq1  AATATACAAAATATTTACAATGGGCTACATTATCACAAATTTGAAAGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAAAATATTTACAATGGGCTACATTATCACAAATTTGAAAGAAA  844

seq1  ATGTGTGTTTTAGAAAGAGAAGCAGGTATTTAAAATAATATAGAATTATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTTTAGAAAGAGAAGCAGGTATTTAAAATAATATAGAATTATA  894

seq1  TATATATACACATATATAGCAATATTGAAAAAAATCATTAAAATGTGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACACATATATAGCAATATTGAAAAAAATCATTAAAATGTGTAT  944

seq1  GCATGCTGTTTATCAATAGATACAACAGACATACATAATCAAGGCATAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTGTTTATCAATAGATACAACAGACATACATAATCAAGGCATAAC  994

seq1  TTCAGAGAACACTCAGAGAACCTGGCTCCTGATAACTTTTATGTTTTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAACACTCAGAGAACCTGGCTCCTGATAACTTTTATGTTTTGAG  1044

seq1  AAAGTGAAGTCCTTAGGAATTC  1069
      ||||||||||||||||||||||
seq2  AAAGTGAAGTCCTTAGGAATTC  1066

seq1: chr18_88972786_88973545
seq2: B6Ng01-301L24.g_398_1144

seq1  GTCAGCTTGGAGAGAGTTCAAGCCAGAACACTGAGTTGAACCAGTCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTGGAGAGAGTTCAAGCCAGAACACTGAGTTGAACCAGTCAGTT  50

seq1  AAGGGTTCAAGATTCCAGAAAGAACAAGAAAGGGTGAGTTTACTCAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTCAAGATTCCAGAAAGAACAAGAAAGGGTGAGTTTACTCAGCAG  100

seq1  TAAGCTTCCAGAGGGACAACAATTACATCAGACAAATAAAAGATACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTCCAGAGGGACAACAATTACATCAGACAAATAAAAGATACTTTT  150

seq1  ACAAGTGGAGGGTTTTCAGTGTAAGACCTGCATGAGCCAGTCAAAATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGGAGGGTTTTCAGTGTAAGACCTGCATGAGCCAGTCAAAATTCC  200

seq1  AACATGGATGGAAGAGGGTCCTTTAATGCCCACTCCTTTTAGAGGAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGATGGAAGAGGGTCCTTTAATGCCCACTCCTTTTAGAGGAGCTA  250

seq1  GTGGAAGTTAATGGAGCCAGTTAATCGCCGTTGGAGACATTGCCCACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTTAATGGAGCCAGTTAATCGCCGTTGGAGACATTGCCCACTGG  300

seq1  CAAGCTGATCATGAGCTATTGGATTGCTACAAACCAGGCAACACTAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGATCATGAGCTATTGGATTGCTACAAACCAGGCAACACTAACTG  350

seq1  GACTTATTAGGCTGTTAATAACAATAAAAAAAGAAGACAAAGTTGGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTAGGCTGTTAATAACAATAAAAAAAGAAGACAAAGTTGGGAGT  400

seq1  GAGCAATGATTGAGGCATTATGAAAAGCTAAAGGGAGGTAGCAATAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGATTGAGGCATTATGAAAAGCTAAAGGGAGGTAGCAATAGATA  450

seq1  GGTAGTATCAAAATATACTGCAAAAATGAAGATATTTTTAAAGAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTATCAAAATATACTGCAAAAATGAAGATATTTTTAAAGAATTTTT  500

seq1  CAAAAGATATTTTCAAAAATTGTTTCAAAGAATAAAAATATTTTTTAAAA  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAAAGATATTTTCAAAAATTGTTTCAAAGAATAAAAATA-TTTTTAAAA  549

seq1  ACAGTATTA-TTTTAAGCAAGTGGCTTTTT-GGTAAGCCATTCTAGAGGA  598
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  ACAGTATTATTTTTAAGCAAGTGGCTTTTTGGGTAAGCCATTCTAGAGGA  599

seq1  AAGCCTGGCACCACCTTTTAAAACTAAAAATGGTCTTACCAAACAGTCCT  648
      |||||||||| |||  ||| ||||||||||| ||||   |||||||||||
seq2  AAGCCTGGCA-CAC--TTTTAAACTAAAAAT-GTCT--ACAAACAGTCCT  643

seq1  GTCTCAGTTAGGGTTTCTATTGCTGCAATGAAACATCAAAAAACAAGATG  698
      ||||||| ||||||||||| |||||| ||||||||||  |||||||||||
seq2  GTCTCAG-TAGGGTTTCTA-TGCTGC-ATGAAACATC--AAAACAAGATG  688

seq1  GGGAGGAAATGGTTTATTCATCTTACACTTATAGATCATATTCTATCATC  748
      |||||| |||| ||   ||||||||||| | | ||||||| |||||||||
seq2  GGGAGG-AATGCTT--ATCATCTTACACCTTTGGATCATA-TCTATCATC  734

seq1  AG-AGAAACTCAG  760
      || ||||||||||
seq2  AGAAGAAACTCAG  747