BAC Information

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BAC

Clone NameB6Ng01-302B14
Chromosome18 (Build37)
Map Location 36,864,646 - 36,865,782
singlet/doubletsinglet
Overlap genenone
Upstream gene1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik
Downstream geneCd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302B14.bB6Ng01-302B14.g
ACCGA096239GA096240
length1,1741,144
definitionB6Ng01-302B14.b B6Ng01-302B14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaataaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggttggacctggagggcatcatcctgagtgaggtaacccattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtagcccaaggagctaaaggatctgcaaccct
atagtggaacacattatgaactaaccagtaccccagagctctgactctta
gctgcatatgtatcaaaagatgcctagtcggcatcactggaagagagtct
caatgtcactgctaacttgaatgccagtacagggaacggcatggctatgg
ggaagttggagttgactatagcgc
gaattctgtgaaactagatggtccttgatgtatgactaaaaattgaggca
taggggcacagcacagcacagcacagtcctaatagcccaggtacatgctg
tgtgttctcatcttggaaacaatgcaataactgcacaatggtagtcccag
attaatgattgacttgcaaacaaagtttgaagacattatttaaaaatgaa
atagagccaacattggaaccccaagaaagaaaaaaaaaaactattgaagt
tataaaataagttttacacaacatttgagagtggttcctggataaacaag
tataaaatatataaaatcttatattagtaaaactaagtcaaaacactgga
ctctcttaggagagtcattgtgtacaatgtgcagaagcagaaagctagtg
gaactactgagttaagggttaacttcattctttctggccactgcctggca
gctttgcccaggtcatttatcattagagcttcacaagaaaatgcaagtag
ccggcctcagagctctgagctctgaagtacaataagtcaaaagttaaagt
ttaaataatggtgtttacaattattattattttggccaaaggcttgaaat
aataggggaagcttgaaactttgggaaacaattgtaattcttaattcttt
gtgggatgttgtactggctggttttgtgtgtcaacttgacacaggctgga
gttatcacagagaaaggagcttcagttggggaagtgcctccatgagatcc
agctgtggggcattttctcaattagtgatcaaggaggaggtccccttgtg
ggtgggaccatatctgggtttggtagtcttgggttctataagaaagtaag
ctgagcaagccagtggaaagcatgtcagtaagtaacatccctccatggct
tctgcatcagctcctgctttctgacctatttgagtgccagtccttgattt
ccctttggtgataaacagcagttgtgaaagtataagctgaataacccttt
tcctccccgacttgcttctggtcatgatgtttgtgcagaatagaaaccct
gaacgagacggatgttgattatttctttgattggacaatgaattacaccg
aatgtctttttctacctggctttagagtattccaattaaaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36864646_36865782
seq2: B6Ng01-302B14.g_70_1213

seq1  GAATTCTGTGAAACTAGATGGTCCTTGATGTATGACTAAAAATTGAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAAACTAGATGGTCCTTGATGTATGACTAAAAATTGAGGCA  50

seq1  TAGGGGCACAGCACAGCACAGCACAGTCCTAATAGCCCAGGTACATGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCACAGCACAGCACAGCACAGTCCTAATAGCCCAGGTACATGCTG  100

seq1  TGTGTTCTCATCTTGGAAACAATGCAATAACTGCACAATGGTAGTCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCATCTTGGAAACAATGCAATAACTGCACAATGGTAGTCCCAG  150

seq1  ATTAATGATTGACTTGCAAACAAAGTTTGAAGACATTATTTAAAAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGATTGACTTGCAAACAAAGTTTGAAGACATTATTTAAAAATGAA  200

seq1  ATAGAGCCAACATTGGAACCCCAAGAAAGAAAAAAAAAAACTATTGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCCAACATTGGAACCCCAAGAAAGAAAAAAAAAAACTATTGAAGT  250

seq1  TATAAAATAAGTTTTACACAACATTTGAGAGTGGTTCCTGGATAAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAAGTTTTACACAACATTTGAGAGTGGTTCCTGGATAAACAAG  300

seq1  TATAAAATATATAAAATCTTATATTAGTAAAACTAAGTCAAAACACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATATATAAAATCTTATATTAGTAAAACTAAGTCAAAACACTGGA  350

seq1  CTCTCTTAGGAGAGTCATTGTGTACAATGTGCAGAAGCAGAAAGCTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAGGAGAGTCATTGTGTACAATGTGCAGAAGCAGAAAGCTAGTG  400

seq1  GAACTACTGAGTTAAGGGTTAACTTCATTCTTTCTGGCCACTGCCTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTGAGTTAAGGGTTAACTTCATTCTTTCTGGCCACTGCCTGGCA  450

seq1  GCTTTGCCCAGGTCATTTATCATTAGAGCTTCACAAGAAAATGCAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCCAGGTCATTTATCATTAGAGCTTCACAAGAAAATGCAAGTAG  500

seq1  CCGGCCTCAGAGCTCTGAGCTCTGAAGTACAATAAGTCAAAAGTTAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTCAGAGCTCTGAGCTCTGAAGTACAATAAGTCAAAAGTTAAAGT  550

seq1  TTAAATAATGGTGTTTACAATTATTATTATTTTGGCCAAAGGCTTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATGGTGTTTACAATTATTATTATTTTGGCCAAAGGCTTGAAAT  600

seq1  AATAGGGGAAGCTTGAAACTTTGGGAAACAATTGTAATTCTTAATTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGAAGCTTGAAACTTTGGGAAACAATTGTAATTCTTAATTCTTT  650

seq1  GTGGGATGTTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATGTTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGA  700

seq1  GTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTGCCTCCATGAGATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTGCCTCCATGAGATCC  750

seq1  AGCTGTGGGGCATTTTCTCAATTAGTGATCAAGGAGGAGGTCCCCTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGGGCATTTTCTCAATTAGTGATCAAGGAGGAGGTCCCCTTGTG  800

seq1  GGTGGGACCATATCTGGG-TTGGTAGTCTTGGGTTCTATAAGAAAGTAAG  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTGGGACCATATCTGGGTTTGGTAGTCTTGGGTTCTATAAGAAAGTAAG  850

seq1  CTGAGCAAGCCAGTGG-AAGCATGTCAGTAAGTAACATCCCTCCATGGCT  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGAGCAAGCCAGTGGAAAGCATGTCAGTAAGTAACATCCCTCCATGGCT  900

seq1  TCTGCATCAGCTCCTGCTTTCTGACCTATTTGAGTGCCAGTCC-TGATTT  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTGCATCAGCTCCTGCTTTCTGACCTATTTGAGTGCCAGTCCTTGATTT  950

seq1  CCC-TTGGTGATAAACAGCAG-TGTGAAAGTATAAGCTGAATAAACCCTT  995
      ||| ||||||||||||||||| |||||||||||||||||||||| || ||
seq2  CCCTTTGGTGATAAACAGCAGTTGTGAAAGTATAAGCTGAATAACCCTTT  1000

seq1  TCCTCCCCGACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACC  1045
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TCCTCCCCGACTTGCTTC-TGGTCATGATGTTTGTGCA-GAATAGAAACC  1048

seq1  CTGACGAAGACAGATG-TGATTATTCTTTTGGATTTGACAATG-ATTACA  1093
      ||||   |||| |||| |||||||| | || |||| ||||||| ||||||
seq2  CTGAACGAGACGGATGTTGATTATT-TCTTTGATTGGACAATGAATTACA  1097

seq1  C--GATGTCTTTTTTTCTACCTGCTTTTAGAGTAT--CAA-TAAAAGAC  1137
      |   |||||  ||||||||||||  ||||||||||  ||| ||||||||
seq2  CCGAATGTC--TTTTTCTACCTGGCTTTAGAGTATTCCAATTAAAAGAC  1144