BAC Information

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BAC

Clone NameB6Ng01-306J11
Chromosome18 (Build37)
Map Location 69,431,544 - 69,580,343
singlet/doubletdoublet
Overlap geneTcf4
Upstream gene4933403F05Rik, Rnmt, Mc5r, Mc2r, LOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306J11.bB6Ng01-306J11.g
ACCGA099580GA099581
length7211,121
definitionB6Ng01-306J11.b B6Ng01-306J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,431,544 - 69,432,259)(69,579,219 - 69,580,343)
sequence
gaattccctaagctaaatgaggttgcctcacacagcatttgtgagcactg
gaatctggctgtggtttgaacaaacatgcaaacctgtgtctttttctcat
ccctcattcctgagagaaacaaaattgagcctttcatatatgatcaacat
cctaacttacaaatctgttatccaatctcaggatttctcttagcttccac
aagtttaataactccagcttaccaaattacagagatatgagcagcaagta
ctttttataccaaggagcaatctccacagtcctgagatagatagatagat
agatagatagatagatagatagatagatagatagatagacagatagacag
atagacagatagacagacagatagtatactggctggttttgtgtcaactt
gatataagctggagttatcatagagaatggagcctcccttgaggaaatgc
ctccatgagatccagctgtaaggcattttctcaagggtgggagggcccat
tgtgggtagtaccacccctgggctggtagtcttaggtttctataagaaag
caagctgagcaagccacgggaagcaaaccagtaagtaccatccctccatg
gcctctgcatcagctcctgcttcctgctcactgtgtgagttcctgtcctg
acttcctttggtgatgaacagcagtatggaagtgaaagctgaataaaacc
ctttccctcccccaaacttgc
gaattcacataaaaatgaggcaagatgttcaatgatttatggcctcgatt
tcgctagataattaaagaatctgactcttccacagcatcacctttttatt
gtcagatgctgagtagctaaagtgtgtcaaaacaaaatattattttatga
ccattaacaataaaattattactaggtacttattaataacataattggta
ttattacagcaaaacgtgtgtcaggcactctagtttgtaatttatagtgg
atgatttatttatcccttattataactctaggaacctcttctactactgc
atagatcagaaaactgagaatcaaattaaaaaaaaaaaaaagaaagaaaa
gaatgaaagaaaagctaggaagagaaagggcgaccctgaagatgaatcta
gaaaggaaatctagagctgtctctagagtctgcaattgaatgtgagtaga
attaatttactgcttatagcaaaaaatttgttttaaaaacagaattaatt
tacttgagaaatctcaagaccatcaagcctgaactctttcttccctggtc
cctgattccgagtagtggtcatctcccgtgtgattgacaggggtcgatga
gtgctgaagagcttgaactacttcagaatctaaaggtaaacactgacatc
tcaggctcgcatgatggccaggccactggtgcccacaaatgctaagccct
tgcaggaagagtcacccagcagccatttctcactgtccccatgttcctgc
ctccatgggattctaagactacacttcctctctctacagatacaattaga
tgacattctagtaacacacctgtgacaagctcaaagacctgagacagggc
tgcccacccattctcaagtaagctcattcttggaaataaatgaatgagtg
aaaaagatgcagagtcttttcgagtctaaattgcattttcttggtgcagg
atgacgtcaaatgtctgatgaaaaaacatgagctttgaataggccacata
aatgtgtctgtgccagtcacgtgggtacccaaaaacactcctaccagaaa
gcctggctctcacccatacgagtgagccacggaggttaaccacctctatc
tagaccgaatgctgcatgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69431544_69432259
seq2: B6Ng01-306J11.b_49_769

seq1  GAATTCCCTAAGCTAAATGAGGTTGCCTCACACAGCATTTGTGAGCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAGCTAAATGAGGTTGCCTCACACAGCATTTGTGAGCACTG  50

seq1  GAATCTGGCTGTGGTTTGAACAAACATGCAAACCTGTGTCTTTTTCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGCTGTGGTTTGAACAAACATGCAAACCTGTGTCTTTTTCTCAT  100

seq1  CCCTCATTCCTGAGAGAAACAAAATTGAGCCTTTCATATATGATCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTCCTGAGAGAAACAAAATTGAGCCTTTCATATATGATCAACAT  150

seq1  CCTAACTTACAAATCTGTTATCCAATCTCAGGATTTCTCTTAGCTTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTACAAATCTGTTATCCAATCTCAGGATTTCTCTTAGCTTCCAC  200

seq1  AAGTTTAATAACTCCAGCTTACCAAATTACAGAGATATGAGCAGCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAATAACTCCAGCTTACCAAATTACAGAGATATGAGCAGCAAGTA  250

seq1  CTTTTTATACCAAGGAGCAATCTCCACAGTCCTGAGATAGATAGATAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATACCAAGGAGCAATCTCCACAGTCCTGAGATAGATAGATAGAT  300

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGATAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGATAGACAG  350

seq1  ATAGACAGATAGACAGACAGATAGTATACTGGCTGGTTTTGTGTCAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGATAGACAGACAGATAGTATACTGGCTGGTTTTGTGTCAACTT  400

seq1  GATATAAGCTGGAGTTATCATAGAGAATGGAGCCTCCCTTGAGGAAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAGCTGGAGTTATCATAGAGAATGGAGCCTCCCTTGAGGAAATGC  450

seq1  CTCCATGAGATCCAGCTGTAAGGCATTTTCTCAAGGGTGGGAGGGCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAGATCCAGCTGTAAGGCATTTTCTCAAGGGTGGGAGGGCCCAT  500

seq1  TGTGGGTAGTACCACCCCTGGGCTGGTAGTCTTAGG-TTCTATAAGAAAG  549
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTGGGTAGTACCACCCCTGGGCTGGTAGTCTTAGGTTTCTATAAGAAAG  550

seq1  CAAGCTGAGCAAGCCACGGGAAGCAAACCAGTAAGTACCATCCCTCCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAGCAAGCCACGGGAAGCAAACCAGTAAGTACCATCCCTCCATG  600

seq1  GCCTCTGCATCAGCTCCTGCTTCCTGCTCACTGTGTGAGTTCCTGTCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCATCAGCTCCTGCTTCCTGCTCACTGTGTGAGTTCCTGTCCTG  650

seq1  ACTTCCTTTGGTGATGAACAGCAGTATGGAAGTGAAAGCTGAAT-AAACC  698
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTTCCTTTGGTGATGAACAGCAGTATGGAAGTGAAAGCTGAATAAAACC  700

seq1  CTTT-CCTCCCC--AACTTGC  716
      |||| |||||||  |||||||
seq2  CTTTCCCTCCCCCAAACTTGC  721

seq1: chr18_69579219_69580343
seq2: B6Ng01-306J11.g_65_1185 (reverse)

seq1  GTTCATGCAGCATTTCCGTCTAGGTTAGAGGTGGTTAA-CTTCGTGGCTC  49
      |||||||||||| ||| ||||| | ||||||||||||| || ||||||||
seq2  GTTCATGCAGCA-TTCGGTCTA-GATAGAGGTGGTTAACCTCCGTGGCTC  48

seq1  ACTCTGTATGGGTGAGAG-CAAGCTTTCTGGTGGAAGTGTTTTTTGGGTA  98
      |||| ||||||||||||| || |||||||||| | |||| ||||||||||
seq2  ACTC-GTATGGGTGAGAGCCAGGCTTTCTGGTAGGAGTG-TTTTTGGGTA  96

seq1  CCCACGTGACCTGCACAGACACATTTTAATGTGGGCCTTATCAAAGCTCA  148
      ||||||||||  ||||||||||||||  |||| |||||  ||||||||||
seq2  CCCACGTGACTGGCACAGACACATTT--ATGT-GGCCTATTCAAAGCTCA  143

seq1  TG-TTTTTCATCAGACATTTGACGTCATCCTGCACCAAGAAAATGCAATT  197
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTTTTTTCATCAGACATTTGACGTCATCCTGCACCAAGAAAATGCAA-T  192

seq1  TTAGACTCG-AAAGACTCCTGCATC-TTTTCACTCATTCATTTATTTCCA  245
      ||||||||| ||||||| ||||||| ||||||||||||||||||||||||
seq2  TTAGACTCGAAAAGACT-CTGCATCTTTTTCACTCATTCATTTATTTCCA  241

seq1  AGAATGAGCTTACTTGAGAATGGGTGGGCAGCCCTGTCTCAGGTCTTTGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGCTTACTTGAGAATGGGTGGGCAGCCCTGTCTCAGGTCTTTGA  291

seq1  GCTTGTCACAGGTGTGTTACTAGAATGTCATCTAATTGTATCTGTAGAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCACAGGTGTGTTACTAGAATGTCATCTAATTGTATCTGTAGAGA  341

seq1  GAGGAAGTGTAGTCTTAGAATCCCATGGAGGCAGGAACATGGGGACAGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTGTAGTCTTAGAATCCCATGGAGGCAGGAACATGGGGACAGTG  391

seq1  AGAAATGGCTGCTGGGTGACTCTTCCTGCAAGGGCTTAGCATTTGTGGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGCTGCTGGGTGACTCTTCCTGCAAGGGCTTAGCATTTGTGGGC  441

seq1  ACCAGTGGCCTGGCCATCATGCGAGCCTGAGATGTCAGTGTTTACCTTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGCCTGGCCATCATGCGAGCCTGAGATGTCAGTGTTTACCTTTA  491

seq1  GATTCTGAAGTAGTTCAAGCTCTTCAGCACTCATCGACCCCTGTCAATCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGAAGTAGTTCAAGCTCTTCAGCACTCATCGACCCCTGTCAATCA  541

seq1  CACGGGAGATGACCACTACTCGGAATCAGGGACCAGGGAAGAAAGAGTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGAGATGACCACTACTCGGAATCAGGGACCAGGGAAGAAAGAGTTC  591

seq1  AGGCTTGATGGTCTTGAGATTTCTCAAGTAAATTAATTCTGTTTTTAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGATGGTCTTGAGATTTCTCAAGTAAATTAATTCTGTTTTTAAAA  641

seq1  CAAATTTTTTGCTATAAGCAGTAAATTAATTCTACTCACATTCAATTGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTTGCTATAAGCAGTAAATTAATTCTACTCACATTCAATTGCA  691

seq1  GACTCTAGAGACAGCTCTAGATTTCCTTTCTAGATTCATCTTCAGGGTCG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAGAGACAGCTCTAGATTTCCTTTCTAGATTCATCTTCAGGGTCG  741

seq1  CCCTTTCTCTTCCTAGCTTTTCTTTCATTCTTTTCTTTCTTTTTTTTTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCTTCCTAGCTTTTCTTTCATTCTTTTCTTTCTTTTTTTTTTT  791

seq1  TTTAATTTGATTCTCAGTTTTCTGATCTATGCAGTAGTAGAAGAGGTTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTGATTCTCAGTTTTCTGATCTATGCAGTAGTAGAAGAGGTTCC  841

seq1  TAGAGTTATAATAAGGGATAAATAAATCATCCACTATAAATTACAAACTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTATAATAAGGGATAAATAAATCATCCACTATAAATTACAAACTA  891

seq1  GAGTGCCTGACACACGTTTTGCTGTAATAATACCAATTATGTTATTAATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTGACACACGTTTTGCTGTAATAATACCAATTATGTTATTAATA  941

seq1  AGTACCTAGTAATAATTTTATTGTTAATGGTCATAAAATAATATTTTGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTAGTAATAATTTTATTGTTAATGGTCATAAAATAATATTTTGTT  991

seq1  TTGACACACTTTAGCTACTCAGCATCTGACAATAAAAAGGTGATGCTGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACACTTTAGCTACTCAGCATCTGACAATAAAAAGGTGATGCTGTG  1041

seq1  GAAGAGTCAGATTCTTTAATTATCTAGCGAAATCGAGGCCATAAATCATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCAGATTCTTTAATTATCTAGCGAAATCGAGGCCATAAATCATT  1091

seq1  GAACATCTTGCCTCATTTTTATGTGAATTC  1125
      ||||||||||||||||||||||||||||||
seq2  GAACATCTTGCCTCATTTTTATGTGAATTC  1121