BAC Information

Click to search

BAC

Clone NameB6Ng01-308E07
Chromosome18 (Build37)
Map Location 71,485,545 - 71,581,239
singlet/doubletdoublet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308E07.bB6Ng01-308E07.g
ACCGA100813GA100814
length1,1241,157
definitionB6Ng01-308E07.b B6Ng01-308E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,580,103 - 71,581,239)(71,485,545 - 71,486,699)
sequence
gaattcagcactatctagcatgtcaatttaactaggtatatgaatctagt
gaatgatagaacatggtgtgaaagcaaatttcccaacacctgagcttaga
tgtcttcaacccagagtgctatctactttcctttaataatatattttaac
agagtcagcaaataatagaccaagtttgttttgagtcatgctgagcaggt
cacaaccctatcttgttcaccttaacaatccctttcattaaaatacttta
attttatttttttaatattgaagattggaaatatgctcatttgtgtggaa
gttcattgagacaagaagaaaatgtctggatttcaggggactgacacccc
taatattggtctcctttacaggagcagtacaagttctcaatagctgaaca
atctatccaacctattctaaagatttctgaaaacagaactggcacagata
tttctaatttttacttaaattgaataagtcattcttggacaagacggttt
tttcatattctctaattttcagttattttgtttgccctaaattttcaatg
tactgctgatgcttaaggagaaatatatgaagaacaaaataaactattaa
aataaaaaaatgatactacatgtgtctttaaaaaaaagtaatgtttggca
aattagatgtgggagaatatggtcaaaatatgttggaaggaattcaagaa
atttcttgatacgacaggagagatggtttgaccagtagtatgctgatagg
caagcatgaactcctgtgtttggattcccagaatgaatgaaaaattgggt
cctcgggtacactttgtaaagggagcaaggcagatatccagagctctctg
cacagccaggctaatcagtgaagagcaagcacagtgagaaagtttttcat
ataaagatggtagaagtctataaaggaagacaccaaataactacccctag
tagtatccacgtataggtaaacacacacacacacacacacacacacacac
acacacacacacacactcctgtaacaaacatgaagtgtgtaagtgctaga
aagaagtactctgttaacaatgatccataaattcatctgtgtgcaattgc
tatttgttacctctggatgacgct

gaattccaggagtccttttgactcttctcatttttatgacactcctttct
ctcatgtgcctctaaagaaaggaaaggctgggctttgtgagttggttttt
gactcttatttctgaatccatatattagagacttggcggccagctattgg
ggctactggaatgtgagaacatttgggaagaagttgggtggttgagaaaa
taactttagagggtgtcttgggaagtcattctgtcttcaggagttgtttt
tttcttattttcctgtctggcattaggtgaaccaaaatcctctgccttat
actctcacagtgattgatggtgctattatgaacccacagcaaaaaggcca
ggctcccctagaccaaaagctctgacactgtaagtcagaagcacctttct
tctttatagttcaattattctggtattttctctatactaatggaaacatg
gctaacagatagggaaatgcataaaggcgattctgaaacagaccatgagc
cttctgtcttgtttgatcatttcaatcttcttgaaggtactagaaatttg
aaagaatttaatggtcctaggttattgttttcaatataactaggctgccc
ttaaatcttctagagatgccattcaaagactaggagaggactatccagcc
catgcttgaaaaatcagtgaccaaaatccttgtttcagaattcttgaaat
aaaaaaagttgagaaaactagtttcatattaacttgactaaggtatttaa
tttggtctaagaagagtggacactcatttcacaagtatattcagcatgtc
ctggtcaccagcttacatgctactgcacttctagaaaacaaacacttgat
gacctgcagaaaagagtgtattcagaaccactttactgaattcttagtga
tccctggacttcaattattattctgcagtctatcaaacaattgatactcc
cttcctttgcttcttgttataccacagctttcaaatgactgtgtccagtg
agggaatcacaaaataatgcgactagagatgacagtttgatctccatggg
taatgatgtcaaaatatgatgttttcattcctcggctgctacctattgct
tatttttttccaataatgaactgacagcagaatgagaatcatcttgtatg
gttcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71580103_71581239
seq2: B6Ng01-308E07.b_44_1167 (reverse)

seq1  AGCGTCATTTCAGAGTTAACAAAATAGCAAATATTGCACACAGATGAAAT  50
      ||||||| | ||||| |||| ||||||||   |||||||||||||| |||
seq2  AGCGTCA-TCCAGAGGTAAC-AAATAGCA---ATTGCACACAGATG-AAT  44

seq1  TTATGGATCATTTGTTAACCAGAGTACTTCTTTCCTAGCACCTACCACAC  100
      |||||||||| ||||||| |||||||||||||| ||||||| || |||||
seq2  TTATGGATCA-TTGTTAA-CAGAGTACTTCTTT-CTAGCACTTA-CACAC  90

seq1  TTTCCATGTTTGTTACAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT--CATGTTTGTTACAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  138

seq1  GTGTGTGTGTGTGTGTTTACCTATACGTGGATACTACTAGGGGTAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTTTACCTATACGTGGATACTACTAGGGGTAGTTAT  188

seq1  TTGGTGTCTTCCTTTATAGACTTCTACCATCTTTTATATGAAAAACTTTC  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGGTGTCTTCCTTTATAGACTTCTACCATC-TTTATATGAAAAACTTTC  237

seq1  TCACTGTGCTTGCTCTTCACTGATTAGCCTGGCTGTGCAGAGAGCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGCTTGCTCTTCACTGATTAGCCTGGCTGTGCAGAGAGCTCTGG  287

seq1  ATATCTGCCTTGCTCCCTTTACAAAGTGTACCCGAGGACCCAATTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCCTTGCTCCCTTTACAAAGTGTACCCGAGGACCCAATTTTTCA  337

seq1  TTCATTCTGGGAATCCAAACACAGGAGTTCATGCTTGCCTATCAGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTGGGAATCCAAACACAGGAGTTCATGCTTGCCTATCAGCATAC  387

seq1  TACTGGTCAAACCATCTCTCCTGTCGTATCAAGAAATTTCTTGAATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTCAAACCATCTCTCCTGTCGTATCAAGAAATTTCTTGAATTCCT  437

seq1  TCCAACATATTTTGACCATATTCTCCCACATCTAATTTGCCAAACATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATATTTTGACCATATTCTCCCACATCTAATTTGCCAAACATTAC  487

seq1  TTTTTTTTAAAGACACATGTAGTATCATTTTTTTATTTTAATAGTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAGACACATGTAGTATCATTTTTTTATTTTAATAGTTTATT  537

seq1  TTGTTCTTCATATATTTCTCCTTAAGCATCAGCAGTACATTGAAAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTCATATATTTCTCCTTAAGCATCAGCAGTACATTGAAAATTTA  587

seq1  GGGCAAACAAAATAACTGAAAATTAGAGAATATGAAAAAACCGTCTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAACAAAATAACTGAAAATTAGAGAATATGAAAAAACCGTCTTGTC  637

seq1  CAAGAATGACTTATTCAATTTAAGTAAAAATTAGAAATATCTGTGCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGACTTATTCAATTTAAGTAAAAATTAGAAATATCTGTGCCAGT  687

seq1  TCTGTTTTCAGAAATCTTTAGAATAGGTTGGATAGATTGTTCAGCTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCAGAAATCTTTAGAATAGGTTGGATAGATTGTTCAGCTATTG  737

seq1  AGAACTTGTACTGCTCCTGTAAAGGAGACCAATATTAGGGGTGTCAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGTACTGCTCCTGTAAAGGAGACCAATATTAGGGGTGTCAGTCC  787

seq1  CCTGAAATCCAGACATTTTCTTCTTGTCTCAATGAACTTCCACACAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATCCAGACATTTTCTTCTTGTCTCAATGAACTTCCACACAAATG  837

seq1  AGCATATTTCCAATCTTCAATATTAAAAAAATAAAATTAAAGTATTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTTCCAATCTTCAATATTAAAAAAATAAAATTAAAGTATTTTAA  887

seq1  TGAAAGGGATTGTTAAGGTGAACAAGATAGGGTTGTGACCTGCTCAGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGATTGTTAAGGTGAACAAGATAGGGTTGTGACCTGCTCAGCAT  937

seq1  GACTCAAAACAAACTTGGTCTATTATTTGCTGACTCTGTTAAAATATATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAACAAACTTGGTCTATTATTTGCTGACTCTGTTAAAATATATT  987

seq1  ATTAAAGGAAAGTAGATAGCACTCTGGGTTGAAGACATCTAAGCTCAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGAAAGTAGATAGCACTCTGGGTTGAAGACATCTAAGCTCAGGT  1037

seq1  GTTGGGAAATTTGCTTTCACACCATGTTCTATCATTCACTAGATTCATAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAAATTTGCTTTCACACCATGTTCTATCATTCACTAGATTCATAT  1087

seq1  ACCTAGTTAAATTGACATGCTAGATAGTGCTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTAAATTGACATGCTAGATAGTGCTGAATTC  1124


seq1: chr18_71485545_71486699
seq2: B6Ng01-308E07.g_65_1221

seq1  GAATTCCAGGAGTCCTTTTGACTCTTCTCATTTTTATGACACTCCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGTCCTTTTGACTCTTCTCATTTTTATGACACTCCTTTCT  50

seq1  CTCATGTGCCTCTAAAGAAAGGAAAGGCTGGGCTTTGTGAGTTGGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGCCTCTAAAGAAAGGAAAGGCTGGGCTTTGTGAGTTGGTTTTT  100

seq1  GACTCTTATTTCTGAATCCATATATTAGAGACTTGGCGGCCAGCTATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTATTTCTGAATCCATATATTAGAGACTTGGCGGCCAGCTATTGG  150

seq1  GGCTACTGGAATGTGAGAACATTTGGGAAGAAGTTGGGTGGTTGAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTGGAATGTGAGAACATTTGGGAAGAAGTTGGGTGGTTGAGAAAA  200

seq1  TAACTTTAGAGGGTGTCTTGGGAAGTCATTCTGTCTTCAGGAGTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAGAGGGTGTCTTGGGAAGTCATTCTGTCTTCAGGAGTTGTTTT  250

seq1  TTTCTTATTTTCCTGTCTGGCATTAGGTGAACCAAAATCCTCTGCCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATTTTCCTGTCTGGCATTAGGTGAACCAAAATCCTCTGCCTTAT  300

seq1  ACTCTCACAGTGATTGATGGTGCTATTATGAACCCACAGCAAAAAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACAGTGATTGATGGTGCTATTATGAACCCACAGCAAAAAGGCCA  350

seq1  GGCTCCCCTAGACCAAAAGCTCTGACACTGTAAGTCAGAAGCACCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCTAGACCAAAAGCTCTGACACTGTAAGTCAGAAGCACCTTTCT  400

seq1  TCTTTATAGTTCAATTATTCTGGTATTTTCTCTATACTAATGGAAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAGTTCAATTATTCTGGTATTTTCTCTATACTAATGGAAACATG  450

seq1  GCTAACAGATAGGGAAATGCATAAAGGCGATTCTGAAACAGACCATGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGATAGGGAAATGCATAAAGGCGATTCTGAAACAGACCATGAGC  500

seq1  CTTCTGTCTTGTTTGATCATTTCAATCTTCTTGAAGGTACTAGAAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTTGTTTGATCATTTCAATCTTCTTGAAGGTACTAGAAATTTG  550

seq1  AAAGAATTTAATGGTCCTAGGTTATTGTTTTCAATATAACTAGGCTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTTAATGGTCCTAGGTTATTGTTTTCAATATAACTAGGCTGCCC  600

seq1  TTAAATCTTCTAGAGATGCCATTCAAAGACTAGGAGAGGACTATCCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTTCTAGAGATGCCATTCAAAGACTAGGAGAGGACTATCCAGCC  650

seq1  CATGCTTGAAAAATCAGTGACCAAAATCCTTGTTTCAGAATTCTTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGAAAAATCAGTGACCAAAATCCTTGTTTCAGAATTCTTGAAAT  700

seq1  AAAAAAAGTTGAGAAAACTAGTTTCATATTAACTTGACTAAGGTATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTTGAGAAAACTAGTTTCATATTAACTTGACTAAGGTATTTAA  750

seq1  TTTGGTCTAAGAAGAGTGGACACTCATTTCACAAGTATATTCAGCATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTAAGAAGAGTGGACACTCATTTCACAAGTATATTCAGCATGTC  800

seq1  CTGGTCACCAGCTTACATGCTACTGCACTTCTAGAAAACAAACACTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACCAGCTTACATGCTACTGCACTTCTAGAAAACAAACACTTGAT  850

seq1  GACCTGCAGAAAAGAGTGTATTCAGAACCACTTTACTGAATTCTTAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCAGAAAAGAGTGTATTCAGAACCACTTTACTGAATTCTTAGTGA  900

seq1  TCCCTGGACTTCAATTATTATTCTGCAGTCTATCAAACAATTGATACTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGACTTCAATTATTATTCTGCAGTCTATCAAACAATTGATACTCC  950

seq1  CTTCCTTTGCTTCT--GTATACCAACAGCTTTCAAATGACTGTGTCCAGT  998
      ||||||||||||||   |||||| ||||||||||||||||||||||||||
seq2  CTTCCTTTGCTTCTTGTTATACC-ACAGCTTTCAAATGACTGTGTCCAGT  999

seq1  GAGGGAATCACAAAATAATGCGACTAGAGATGACAG-TTGATCTCCAT-G  1046
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  GAGGGAATCACAAAATAATGCGACTAGAGATGACAGTTTGATCTCCATGG  1049

seq1  GTAATGAATGTCAAAATAATGATGTTTTCATTCCTCGGTTGCTA-CTAAT  1095
      |||||| |||||||||| |||||||||||||||||||| ||||| ||| |
seq2  GTAATG-ATGTCAAAAT-ATGATGTTTTCATTCCTCGGCTGCTACCTATT  1097

seq1  GC-TATTTTTTCCAAATAATGAATTGACAGGAGATTGAGAATCATCTTGT  1144
      || |||||||| | ||||||||| |||||| ||| |||||||||||||||
seq2  GCTTATTTTTTTCCAATAATGAACTGACAGCAGAATGAGAATCATCTTGT  1147

seq1  AATGGTCCACC  1155
       ||||| ||||
seq2  -ATGGTTCACC  1157


| Home | SequenceCutter | Blast | Download |