BAC Information

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BAC

Clone NameB6Ng01-308F24
Chromosome18 (Build37)
Map Location 37,570,361 - 37,571,491
singlet/doubletsinglet
Overlap genePcdhb10
Upstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9
Downstream genePcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308F24.bB6Ng01-308F24.g
ACCGA100894GA100895
length1,1271,122
definitionB6Ng01-308F24.b B6Ng01-308F24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattctagacacagttttgattctcatctcttcatggggtctgct
tctctatatgacacctataggaacccccttagtggtcagacaggatgcag
ggtgatttccatgtttttgtatttgttgagacttgctttgtgtctgagca
cgtgatcagtatttgagaaagttccataaggtactgagaacgtttattct
ttttcatctatgtgatgtattctgtaaatatctattaggactgttgcttc
tattggttttaatattcagctttgatctgtagtggttgcttttcattctt
tttttttttttttggtttgcttttcgagacagggtttctctgaatagccc
tggctgtcctggctgtcctgcaactcagaaatccacctgcctctgcctcc
caagtgctgggattaaggcaccaccaccgcctggcttctgtagtggtttc
ttaacatcagttaacaattatttttgtgtttagcttttctttttcttttt
ttaatcctcgttttcctcctcctctttttgtttttctttttttcctgaat
gatctatttacaagtgttggatattgaagcctcccacttcagtgtgtgaa
tattagtatgtgatttaatctgaagtagtgtttttttccaaacttaggtg
ccttgtgtttggagcaagatgttaagaattgaaatgtcctcttgatggat
ttttaaaaaaattgacacatttttccttgcagatctcttctgctttggtt
tgaaatatattttgtcagatattcaaattgacacaccaatttgtttctta
gttccatttggttgggaatatctctttatcaccattaccctgaggtgatg
tctgtccttgatgttaagttgtgttttaaaatgcaacagaaggatggatc
ctgtttttacatcccatgtgttagttctatatcagagacaggccctgatc
ccacttctattgggattgagaattatcagtgctgaagacaccaggatata
atttttgtaccaattggtggtggtgattatggtggtgtttaaacatgctt
accttatttgactgccgttctagacctatattcccgatgccttaccctga
tgtacttaactcattaagttggaactg
gaattctttccaaaacagatctacatcctcctttgccctatttaactttt
cctttccactacttctggtgggggtatggctagaaggggggttaaagcat
tgaagtccccttattaaaagtaggctgtgaaagaaatcaaagtctacaca
caataacccaattcctagaaataaaaacatattacagaaaaatggtaaat
ataatatttgtcatagcattaccctttaataaagttaaaaactgaaaact
accattgtttagaaactgcagtagccaaaatgaatcaaggcatacttcta
cagaagagtaacataagacaatggagagaaagcagttagaaaaacttgtc
acatatgacttcacaaaatcaatgtctatcaactagcacaagagaggaat
aatctattaacccatcttataaaactcctaacaaagatgagtaatgtgta
atggtagcactcaatatgctgcttctgtatagttgaccatcaagtaatag
ccacagagagcatggccggtttggtacattttaggttggttttttttttt
aatgttctgctaataccaacttattaatcataggatatattcctgttgtg
tgccttctgaatgtatttcctatatcacaacaaaagtgtataaattcaat
tatttctggttaaaattaataagaaacactcagcttaataaattataagc
ccataaaaagttttttttataatttcaaaagaattttgctaacactagta
tacaatattaacatattatattatgaatgtttccacgtactttcagctca
gaggtatgagtaggatactgatatttaggaggtgacataaataaactaca
ggttacagctaaaactcaaaactagggtttgaattcatgatgactaacta
catgcaatcatgaaaagggacacttggtggcgctgtcgactaagggagag
aattatgggtctacatatacccagaagcactgaaggctgggaaacagaac
gctttctactccttagaagagagtatttgagcgtgatctaggggaagaaa
tcttccgccgggcagtaggacatcaaagataaattcaagatatttttaac
atatttctggattgaactgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37570361_37571491
seq2: B6Ng01-308F24.g_67_1188

seq1  GAATTCTTTCCAAAACAGATCTACATCCTCCTTTGCCCTATTTAACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAAAACAGATCTACATCCTCCTTTGCCCTATTTAACTTTT  50

seq1  CCTTTCCACTACTTCTGGTGGGGGTATGGCTAGAAGGGGGGTTAAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCACTACTTCTGGTGGGGGTATGGCTAGAAGGGGGGTTAAAGCAT  100

seq1  TGAAGTCCCCTTATTAAAAGTAGGCTGTGAAAGAAATCAAAGTCTACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCCCCTTATTAAAAGTAGGCTGTGAAAGAAATCAAAGTCTACACA  150

seq1  CAATAACCCAATTCCTAGAAATAAAAACATATTACAGAAAAATGGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACCCAATTCCTAGAAATAAAAACATATTACAGAAAAATGGTAAAT  200

seq1  ATAATATTTGTCATAGCATTACCCTTTAATAAAGTTAAAAACTGAAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTGTCATAGCATTACCCTTTAATAAAGTTAAAAACTGAAAACT  250

seq1  ACCATTGTTTAGAAACTGCAGTAGCCAAAATGAATCAAGGCATACTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTTTAGAAACTGCAGTAGCCAAAATGAATCAAGGCATACTTCTA  300

seq1  CAGAAGAGTAACATAAGACAATGGAGAGAAAGCAGTTAGAAAAACTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGTAACATAAGACAATGGAGAGAAAGCAGTTAGAAAAACTTGTC  350

seq1  ACATATGACTTCACAAAATCAATGTCTATCAACTAGCACAAGAGAGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGACTTCACAAAATCAATGTCTATCAACTAGCACAAGAGAGGAAT  400

seq1  AATCTATTAACCCATCTTATAAAACTCCTAACAAAGATGAGTAATGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTAACCCATCTTATAAAACTCCTAACAAAGATGAGTAATGTGTA  450

seq1  ATGGTAGCACTCAATATGCTGCTTCTGTATAGTTGACCATCAAGTAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGCACTCAATATGCTGCTTCTGTATAGTTGACCATCAAGTAATAG  500

seq1  CCACAGAGAGCATGGCCGGTTTGGTACATTTTAGGTTGGTTTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGAGCATGGCCGGTTTGGTACATTTTAGGTTGGTTTTTTTTTTT  550

seq1  AATGTTCTGCTAATACCAACTTATTAATCATAGGATATATTCCTGTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTGCTAATACCAACTTATTAATCATAGGATATATTCCTGTTGTG  600

seq1  TGCCTTCTGAATGTATTTCCTATATCACAACAAAAGTGTATAAATTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGAATGTATTTCCTATATCACAACAAAAGTGTATAAATTCAAT  650

seq1  TATTTCTGGTTAAAATTAATAAGAAACACTCAGCTTAATAAATTATAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGGTTAAAATTAATAAGAAACACTCAGCTTAATAAATTATAAGC  700

seq1  CCATAAAAAGTTTTTTTTATAATTTCAAAAGAATTTTGCTAACACTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAAGTTTTTTTTATAATTTCAAAAGAATTTTGCTAACACTAGTA  750

seq1  TACAATATTAACATATTATATTATGAATGTTTCCACGTACTTTCAGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATTAACATATTATATTATGAATGTTTCCACGTACTTTCAGCTCA  800

seq1  GAGGTATGAGTAGGATACTGATATTTAGGAGGTGACATAAATAAACTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGAGTAGGATACTGATATTTAGGAGGTGACATAAATAAACTACA  850

seq1  GGTTACAGCTAAAACTCAAAACTAGGGTTTGAATTCATGATGACTAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTTACAGCTAAAACTCAAAACTAGGGTTTGAATTCATGATGACT-AACT  899

seq1  ACATGCAATCATGAAAAGGGACACTTGGTGGCGCTGTCGACTAAGGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAATCATGAAAAGGGACACTTGGTGGCGCTGTCGACTAAGGGAGA  949

seq1  GAATTATGGGTCTACATATACCCAGAAAGCCACTGAAAGCTGGAAAACAG  1000
      |||||||||||||||||||||||||||   ||||||| ||||| ||||||
seq2  GAATTATGGGTCTACATATACCCAGAA--GCACTGAAGGCTGGGAAACAG  997

seq1  AACGCTTTCTACTCCCTAGAAGAAGAAGGTATTTGAGCGTGATCTAGGGG  1050
      ||||||||||||||| |||||| |||  ||||||||||||||||||||||
seq2  AACGCTTTCTACTCCTTAGAAG-AGA--GTATTTGAGCGTGATCTAGGGG  1044

seq1  -AGAAATC-TCCG-CGGGCAGTAAGACATTAAAGATTAAATTCAAGGATA  1097
       ||||||| |||| ||||||||| ||||| ||||| ||||||||| ||||
seq2  AAGAAATCTTCCGCCGGGCAGTAGGACATCAAAGA-TAAATTCAA-GATA  1092

seq1  -TTTTACCATATTTCTTTGTGGATTGAAACTGACT  1131
       ||||| ||||||||    ||||||| ||||||||
seq2  TTTTTAACATATTTC----TGGATTG-AACTGACT  1122