BAC Information

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BAC

Clone NameB6Ng01-311G02
Chromosome18 (Build37)
Map Location 29,643,321 - 29,803,460
singlet/doubletdoublet
Overlap genenone
Upstream geneBC051408, LOC100040930, 4930578E11Rik
Downstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311G02.bB6Ng01-311G02.g
ACCGA103112GA103113
length1,1501,122
definitionB6Ng01-311G02.b B6Ng01-311G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,643,321 - 29,644,403)(29,802,347 - 29,803,460)
sequence
gaattccctttgctgccacgccagccccacgcaatgacagtcagctacaa
ctctctgccctaacatggtcctgctgactctgtctctagctagcccaggc
agcaacaggtctgtattcccagctttggctcacttgtctctggctccact
acttccttctaagcccaaaaaccctgtaatcggccgtcccacattccagt
cttcaattaaatcaaaactcttgaagcttataattaaccaatcagattta
tgtatcaataaattctcaattcacaagatgccaatacaccaacttcagaa
ttgataatgataaaagctgcccacctagattagacaagttatcccaatta
ttctatcctttatgatatcataactacctgtggctatttaaagccacact
ggttcaggttcttcttcatgtccaactgcctacatcttgacttcccttct
tttctgagatgctctatgtctctgcaactcttagctctatttccattttc
cctgttcaatcacaggcatcctgctgcactaatattttaatgtaactgga
taggaaaatcttgcctcattgtgccaatctcagacatgtattcatcattc
cttagacatatagtatgatccttgctttctctgtttttcccaattccctc
aaatacaatcagtctaaaagtaaattataaagttttgttggtaatttgtt
ttgtaaaatatctactatttacatacggttataagttctaaatttgtgta
tggtatagactcctgttgactctaaatacctagtcttcacaggtctctgt
atgtgtagtcaacacatttggtgaagtcagtcttcaggcctgagaaggat
tctaaactctgaagggcaactttaagtattcactaaagaactccaaaaga
tgtaaaagttcttataatttatgtctaagaaataattgggcttctcactg
ttaatggaatcatgaaacttataaaaacaaacaagcaaacaaaaaacaaa
caaacaaaactacctaaacaagaacaggtgcacacccccacgctgaaatc
acccagcacttctttagcattctttagtttcattattctcttcacagaat
acttcctgtcttttcattgaataacatagtttgagatcctcttctacagt

gaattcttcggttcaattcacagcaaaacacacaagcactcacacacaca
cacacacaagagacagagagagagggagagggagagagagggacagagac
agagacagagagacagagacagatgtgagagtggggcaagagacagagaa
gagactagagagatacacacaggttgatgagacataggttatgatcctgt
catgcagatttggggcttaaagcttccttatcttgcattatgcagccttg
gttacttttgttcctaaagattcaggatctttctaaaaataaggactctg
acctcatctctatactccttattttcacattcaaggaacaccattttcag
ttatctattcagtatcaagttcaaaactcttgttaaggatgctgagggca
agcttttcttatcctcttcagggtgatggttattatccagatgtgaagcc
tgtgaccaaggacatgtttgtccttattgtagaacctagccaaatggctg
ctaacacacctggaaacaaggaagaaaggtctggattggtctagccagga
gacttaagactttttttttttaaacagcaaccagttgaatcctgttttca
gaatggcagctttatgtttttgtccattattttatgctggcattttcctg
gagcttcttgaaccttagaattctcagggagaaaaatatcactctcatgc
ataactaactacgttcttacacatctaaatatccaagccaactatttcat
tacaggaaactggttacctggaaattgtcttcctgggtcattcattcagt
cttccagtgtgttcagtttctcattaaactgtctattcattgtccagaca
tgagaggacctacaccaataccaacttaacttggttaccatgttagagga
gaggcagctcctctcactgatgttgtaatgcctgctattgggcttgtcat
ggtcttatttcagatcccagtctgagaacaaagccgaaagaaaaccatcc
caggccataagactcagaatacctcttactggtagaattcgaacctgaaa
atagccttcttgaagcttcatggagtgaacttaggtcctcctaaaaagga
tgtccacagccatagtaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29643321_29644403
seq2: B6Ng01-311G02.b_116_1195

seq1  CTGCTGACTCTGTCTCTAGCTAGCCCAGGCAGCAACAGGTCTGTATTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTCTGTCTCTAGCTAGCCCAGGCAGCAACAGGTCTGTATTCCC  50

seq1  AGCTTTGGCTCACTTGTCTCTGGCTCCACTACTTCCTTCTAAGCCCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGCTCACTTGTCTCTGGCTCCACTACTTCCTTCTAAGCCCAAAA  100

seq1  ACCCTGTAATCGGCCGTCCCACATTCCAGTCTTCAATTAAATCAAAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTAATCGGCCGTCCCACATTCCAGTCTTCAATTAAATCAAAACTC  150

seq1  TTGAAGCTTATAATTAACCAATCAGATTTATGTATCAATAAATTCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTTATAATTAACCAATCAGATTTATGTATCAATAAATTCTCAAT  200

seq1  TCACAAGATGCCAATACACCAACTTCAGAATTGATAATGATAAAAGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGATGCCAATACACCAACTTCAGAATTGATAATGATAAAAGCTGC  250

seq1  CCACCTAGATTAGACAAGTTATCCCAATTATTCTATCCTTTATGATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAGATTAGACAAGTTATCCCAATTATTCTATCCTTTATGATATCA  300

seq1  TAACTACCTGTGGCTATTTAAAGCCACACTGGTTCAGGTTCTTCTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACCTGTGGCTATTTAAAGCCACACTGGTTCAGGTTCTTCTTCATG  350

seq1  TCCAACTGCCTACATCTTGACTTCCCTTCTTTTCTGAGATGCTCTATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGCCTACATCTTGACTTCCCTTCTTTTCTGAGATGCTCTATGTC  400

seq1  TCTGCAACTCTTAGCTCTATTTCCATTTTCCCTGTTCAATCACAGGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACTCTTAGCTCTATTTCCATTTTCCCTGTTCAATCACAGGCATC  450

seq1  CTGCTGCACTAATATTTTAATGTAACTGGATAGGAAAATCTTGCCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCACTAATATTTTAATGTAACTGGATAGGAAAATCTTGCCTCATT  500

seq1  GTGCCAATCTCAGACATGTATTCATCATTCCTTAGACATATAGTATGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAATCTCAGACATGTATTCATCATTCCTTAGACATATAGTATGATC  550

seq1  CTTGCTTTCTCTGTTTTTCCCAATTCCCTCAAATACAATCAGTCTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCTCTGTTTTTCCCAATTCCCTCAAATACAATCAGTCTAAAAG  600

seq1  TAAATTATAAAGTTTTGTTGGTAATTTGTTTTGTAAAATATCTACTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATAAAGTTTTGTTGGTAATTTGTTTTGTAAAATATCTACTATTT  650

seq1  ACATACGGTTATAAGTTCTAAATTTGTGTATGGTATAGACTCCTGTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGGTTATAAGTTCTAAATTTGTGTATGGTATAGACTCCTGTTGAC  700

seq1  TCTAAATACCTAGTCTTCACAGGTCTCTGTATGTGTAGTCAACACATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATACCTAGTCTTCACAGGTCTCTGTATGTGTAGTCAACACATTTG  750

seq1  GTGAAGTCAGTCTTCAGGCCTGAGAAGGATTCTAAACTCTGAAGGGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCAGTCTTCAGGCCTGAGAAGGATTCTAAACTCTGAAGGGCAAC  800

seq1  TTTAAGTATTCACTAAAGAACTCCAAAAGATGTAAAAGTTCTTATAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTATTCACTAAAGAACTCCAAAAGATGTAAAAGTTCTTATAATTT  850

seq1  ATGTCTAAGAAATAATT-GGCTTCTCACTGTTAATGGAATCATGAAACTT  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGTCTAAGAAATAATTGGGCTTCTCACTGTTAATGGAATCATGAAACTT  900

seq1  ATAAAAACAAAACAAAGCAAAACAAAAAACAAAACAAAACAAAAAACTAC  949
      |||||||||||   |||| ||||||||||| ||||||   | ||||||||
seq2  ATAAAAACAAA--CAAGC-AAACAAAAAAC-AAACAA---ACAAAACTAC  943

seq1  CTAAACAAAGAACAGGGTGCACACCCCCACGCTGAAATCACCCAGCACTT  999
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  CTAAAC-AAGAACA-GGTGCACACCCCCACGCTGAAATCACCCAGCACTT  991

seq1  CTTTAAGCATTCTTTAATTTCAT--ATCTCTTCACAG-ATAC-TCCTGTC  1045
      |||| ||||||||||| ||||||   ||||||||||| |||| |||||||
seq2  CTTT-AGCATTCTTTAGTTTCATTATTCTCTTCACAGAATACTTCCTGTC  1040

seq1  -TTTCAT--GATTACATAGTTTGAGGATTCCTC-TCTACAGT  1083
       ||||||   || ||||||||||||   ||||| ||||||||
seq2  TTTTCATTGAATAACATAGTTTGAG--ATCCTCTTCTACAGT  1080

seq1: chr18_29802347_29803460
seq2: B6Ng01-311G02.g_68_1189 (reverse)

seq1  TCTTTTAATAATGCTGT-GACAATCCTTTTAGGAGGAC--TAGTTCATCT  47
      ||||||| ||  ||||| ||||  | ||||||||||||   ||||||   
seq2  TCTTTTACTATGGCTGTGGACATCCTTTTTAGGAGGACCTAAGTTCACTC  50

seq1  CATGAAGCCTC-AGAA-GCTATTTTCAGG-TCCAATTCTACCAGTAAGA-  93
      |||||||| || |||| |||||||||||| || |||||||||||||||| 
seq2  CATGAAGCTTCAAGAAGGCTATTTTCAGGTTCGAATTCTACCAGTAAGAG  100

seq1  GTA-TCTGAGTCTTATGGCCCTGGGATGGTTTTCTTTCGGCTTTG-TCTC  141
      ||| |||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GTATTCTGAGTCTTATGG-CCTGGGATGGTTTTCTTTCGGCTTTGTTCTC  149

seq1  AGACTTGGATCCTGAAAT-AGACCATGAACAAG-CCAATAGCAGGCA-TA  188
      ||||| |||| ||||||| |||||||| ||||| ||||||||||||| ||
seq2  AGACTGGGAT-CTGAAATAAGACCATG-ACAAGCCCAATAGCAGGCATTA  197

seq1  CAACATCAGTGAGAGGAGCTGCCTCTCCTCTAACATGGTAACCAAGTTAA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCAGTGAGAGGAGCTGCCTCTCCTCTAACATGGTAACCAAGTTAA  247

seq1  GTTGGTATTTGGTGTAGGTCCTCTCATGTCTGGACAATGAATAGACAGTT  288
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTA-TTGGTGTAGGTCCTCTCATGTCTGGACAATGAATAGACAGTT  296

seq1  TAATGAGAAACTGAACACACTGGAAGACTGAATGAATGACCCAGGAAGAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGAAACTGAACACACTGGAAGACTGAATGAATGACCCAGGAAGAC  346

seq1  AATTTCCAGGTAACCAGTTTCCTGTAATGAAATAGTTGGCTTGGATATTT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGGTAACCAGTTTCCTGTAATGAAATAGTTGGCTTGGATATTT  396

seq1  AGATGTGTAAGAACGTAGTTAGTTATGCATGAGAGTGATATTTTTCTCCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTAAGAACGTAGTTAGTTATGCATGAGAGTGATATTTTTCTCCC  446

seq1  TGAGAATTCTAAGGTTCAAGAAGCTCCAGGAAAATGCCAGCATAAAATAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTCTAAGGTTCAAGAAGCTCCAGGAAAATGCCAGCATAAAATAA  496

seq1  TGGACAAAAACATAAAGCTGCCATTCTGAAAACAGGATTCAACTGGTTGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAAACATAAAGCTGCCATTCTGAAAACAGGATTCAACTGGTTGC  546

seq1  TGTTTAAAAAAAAAAAGTCTTAAGTCTCCTGGCTAGACCAATCCAGACCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAAAAAAAAGTCTTAAGTCTCCTGGCTAGACCAATCCAGACCT  596

seq1  TTCTTCCTTGTTTCCAGGTGTGTTAGCAGCCATTTGGCTAGGTTCTACAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTGTTTCCAGGTGTGTTAGCAGCCATTTGGCTAGGTTCTACAA  646

seq1  TAAGGACAAACATGTCCTTGGTCACAGGCTTCACATCTGGATAATAACCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAAACATGTCCTTGGTCACAGGCTTCACATCTGGATAATAACCA  696

seq1  TCACCCTGAAGAGGATAAGAAAAGCTTGCCCTCAGCATCCTTAACAAGAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGAAGAGGATAAGAAAAGCTTGCCCTCAGCATCCTTAACAAGAG  746

seq1  TTTTGAACTTGATACTGAATAGATAACTGAAAATGGTGTTCCTTGAATGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACTTGATACTGAATAGATAACTGAAAATGGTGTTCCTTGAATGT  796

seq1  GAAAATAAGGAGTATAGAGATGAGGTCAGAGTCCTTATTTTTAGAAAGAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAGGAGTATAGAGATGAGGTCAGAGTCCTTATTTTTAGAAAGAT  846

seq1  CCTGAATCTTTAGGAACAAAAGTAACCAAGGCTGCATAATGCAAGATAAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCTTTAGGAACAAAAGTAACCAAGGCTGCATAATGCAAGATAAG  896

seq1  GAAGCTTTAAGCCCCAAATCTGCATGACAGGATCATAACCTATGTCTCAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTAAGCCCCAAATCTGCATGACAGGATCATAACCTATGTCTCAT  946

seq1  CAACCTGTGTGTATCTCTCTAGTCTCTTCTCTGTCTCTTGCCCCACTCTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTGTGTATCTCTCTAGTCTCTTCTCTGTCTCTTGCCCCACTCTC  996

seq1  ACATCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCCCTCTCTCTCCCTCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCCCTCTCTCTCCCTCT  1046

seq1  CCCTCTCTCTCTGTCTCTTGTGTGTGTGTGTGTGTGAGTGCTTGTGTGTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCTCTGTCTCTTGTGTGTGTGTGTGTGTGAGTGCTTGTGTGTT  1096

seq1  TTGCTGTGAATTGAACCGAAGAATTC  1114
      ||||||||||||||||||||||||||
seq2  TTGCTGTGAATTGAACCGAAGAATTC  1122