BAC Information

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BAC

Clone NameB6Ng01-316G19
Chromosome18 (Build37)
Map Location 48,902,510 - 49,036,326
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316G19.bB6Ng01-316G19.g
ACCGA106825GA106826
length1,0641,133
definitionB6Ng01-316G19.b B6Ng01-316G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,035,267 - 49,036,326)(48,902,510 - 48,903,646)
sequence
gaattcaagaaatagggtttgggaagaaagcaacaaagttctgtttatgc
aaaataaaaaataattgcacatgttaaaaaaaaattctaaaacctagact
aactaaccatgaaactacaacaaataaatatttggacaaacgcatgtgtt
attaaggcattaacttgctataaagtcaaatcattatagtatcagcatac
agataaacataccaacatatggtaaaaaaatagagatccaaatattagcc
ccatatttttggagtacttacagttaaatgaacctttattttgaacaaga
aaattcaatatcaagaaagatatatttaaaatagagtacagaaagcagag
aaaagtaaaggctagaaagagaagaacgggactggagatgaagcaagctg
tcaatgcagcatataaagggagaggccctggtctatacagagttgtaggc
agctctaccatagctgcactgtgaagctgtgtatccaaagaaaatagaaa
aggaaaataaaaataatgttgagatggtaggagacttaggcaccaagaat
ccaaataaactggatcaaataatatatcaaatctaagtcaatgtgatata
gacatcagagctagaccacacattcctggagtaaattttatatatattta
tatggtaagtacatatctaatacacacatatatatttatatgtaaataca
tatataaattttatacacttttaaattttatcacatacatacacgtatat
ctatattgatatgtcatatttaatggatttcagatatgaaaaattgcttt
ggtatgattctatttaaagtgaaaatatttttgtgggtgggttgtagtat
atatttgtaattgacttatagatcacattagagataagacaatagcttat
gaacaacagaaaatatcactgacaataattaaaaaaattatcccaaagat
catatatttagggatactaggaaaaaacaaagccatacacacacacacac
cacttcaatttaatatcaacatgtatttgttccattaaaatagatttcaa
acaggtggccacta

gaattcttcgtctgtgttcactggaaacatggagagaggagggagaataa
aaatggaacatctggagttcacattgctcccagagttgtttcaggcttca
atctacaagtcttccttttgtccttacatttatgagcactatagtccaga
tgacaggaagtgcgggtaaagtctcatgcctgtcatcttcctattccctc
ccacatgctctactcccataccaatgatttactttgaggagagcctaaaa
ggccacatactaaaacaatgtctgatttggcttttgatttccatagtctc
cataccaaaccttaacagcccatcagaattcattggatcatatttcagct
agccttttgttcttgaggaagtctacttagaagaattaagatgtagtgat
ttgtatatgtgtgtcagcattcccagtatttagaagatataattaagcca
gtttagtgttgctatcattatgcagatacattgagatctatatatctaaa
ccacattatggaactttagtgaccttatttttattgtatcctgatatatt
tgttattatcctagatatccatgtatgactaatcattattactcattaac
tgtcattaattatatttaaaattgctactaaaatgatacatattttaaca
tatacaattgtatcctgaaggaatatcttaggtaaatgttatattatctc
ctaatttttttagtgagttttgccagaccttttaagagagttcaagagga
caatgaagtaggcataacctttgtggtgttgttgtattgttctttgcttt
taataaatatagttgaaaacccagaaatttctgcatcatctaaaatagaa
actggagaaaattgacagaggatgatgtttggcaattcagagtacatttt
agtcatgagaatgagagtaaaattattcatgcgaatttttagattccctt
cctgtcaaatgtgtgactaatgactgaagaattcacttctaagaacaaag
aaaatctatattcttagccagttgtcaaaaaatgatgatctagccaagca
ttattacaagaaaacctgcatcatctaacttgcatatagtgcaaggtgaa
cgttacctttttctctttttaaattgagacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49035267_49036326
seq2: B6Ng01-316G19.b_46_1109 (reverse)

seq1  TAGTGGGCCACTGTTTGAATTCTA-TTTAATGG-ACAAATACATG-TGAT  47
      |||||| |  ||||||||| |||| |||||||| ||||||||||| ||||
seq2  TAGTGGCCACCTGTTTGAAATCTATTTTAATGGAACAAATACATGTTGAT  50

seq1  ATTAAATTGAAGT-GTGTGTGTGTGTGTATGGCTTTGTTTTTTCCTAGTA  96
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTGAAGTGGTGTGTGTGTGTGTATGGCTTTGTTTTTTCCTAGTA  100

seq1  TCCCTAAATATATGATCTTTTGGATAATTTTTTTAATTATTGTCAGTGAT  146
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCCTAAATATATGATCTTTGGGATAATTTTTTTAATTATTGTCAGTGAT  150

seq1  ATTTTCTGTTGTTCATAAGCTATTGTCTTATCTCTAATGTGATCTATAAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTTGTTCATAAGCTATTGTCTTATCTCTAATGTGATCTATAAG  200

seq1  TCAATTACAAATATATACTACAACCCACCCACAAAAATATTTTCACTTTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACAAATATATACTACAACCCACCCACAAAAATATTTTCACTTTA  250

seq1  AATAGAATCATACCAAAGCAATTTTTCATATCTGAAATCCATTAAATATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATCATACCAAAGCAATTTTTCATATCTGAAATCCATTAAATATG  300

seq1  ACATATCAATATAGATATACGTGTATGTATGTGATAAAATTTAAAAGTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAATATAGATATACGTGTATGTATGTGATAAAATTTAAAAGTGT  350

seq1  ATAAAATTTATATATGTATTTACATATAAATATATATGTGTGTATTAGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTATATATGTATTTACATATAAATATATATGTGTGTATTAGAT  400

seq1  ATGTACTTACCATATAAATATATATAAAATTTACTCCAGGAATGTGTGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTACCATATAAATATATATAAAATTTACTCCAGGAATGTGTGGT  450

seq1  CTAGCTCTGATGTCTATATCACATTGACTTAGATTTGATATATTATTTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCTGATGTCTATATCACATTGACTTAGATTTGATATATTATTTGA  500

seq1  TCCAGTTTATTTGGATTCTTGGTGCCTAAGTCTCCTACCATCTCAACATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTATTTGGATTCTTGGTGCCTAAGTCTCCTACCATCTCAACATT  550

seq1  ATTTTTATTTTCCTTTTCTATTTTCTTTGGATACACAGCTTCACAGTGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTCCTTTTCTATTTTCTTTGGATACACAGCTTCACAGTGCA  600

seq1  GCTATGGTAGAGCTGCCTACAACTCTGTATAGACCAGGGCCTCTCCCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGTAGAGCTGCCTACAACTCTGTATAGACCAGGGCCTCTCCCTTT  650

seq1  ATATGCTGCATTGACAGCTTGCTTCATCTCCAGTCCCGTTCTTCTCTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGCATTGACAGCTTGCTTCATCTCCAGTCCCGTTCTTCTCTTTC  700

seq1  TAGCCTTTACTTTTCTCTGCTTTCTGTACTCTATTTTAAATATATCTTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTTACTTTTCTCTGCTTTCTGTACTCTATTTTAAATATATCTTTC  750

seq1  TTGATATTGAATTTTCTTGTTCAAAATAAAGGTTCATTTAACTGTAAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTGAATTTTCTTGTTCAAAATAAAGGTTCATTTAACTGTAAGTA  800

seq1  CTCCAAAAATATGGGGCTAATATTTGGATCTCTATTTTTTTACCATATGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAAATATGGGGCTAATATTTGGATCTCTATTTTTTTACCATATGT  850

seq1  TGGTATGTTTATCTGTATGCTGATACTATAATGATTTGACTTTATAGCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTTTATCTGTATGCTGATACTATAATGATTTGACTTTATAGCAA  900

seq1  GTTAATGCCTTAATAACACATGCGTTTGTCCAAATATTTATTTGTTGTAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCCTTAATAACACATGCGTTTGTCCAAATATTTATTTGTTGTAG  950

seq1  TTTCATGGTTAGTTAGTCTAGGTTTTAGAATTTTTTTTTAACATGTGCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTTAGTTAGTCTAGGTTTTAGAATTTTTTTTTAACATGTGCAA  1000

seq1  TTATTTTTTATTTTGCATAAACAGAACTTTGTTGCTTTCTTCCCAAACCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTATTTTGCATAAACAGAACTTTGTTGCTTTCTTCCCAAACCC  1050

seq1  TATTTCTTGAATTC  1060
      ||||||||||||||
seq2  TATTTCTTGAATTC  1064


seq1: chr18_48902510_48903646
seq2: B6Ng01-316G19.g_69_1201

seq1  GAATTCTTCGTCTGTGTTCACTGGAAACATGGAGAGAGGAGGGAGAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGTCTGTGTTCACTGGAAACATGGAGAGAGGAGGGAGAATAA  50

seq1  AAATGGAACATCTGGAGTTCACATTGCTCCCAGAGTTGTTTCAGGCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAACATCTGGAGTTCACATTGCTCCCAGAGTTGTTTCAGGCTTCA  100

seq1  ATCTACAAGTCTTCCTTTTGTCCTTACATTTATGAGCACTATAGTCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAGTCTTCCTTTTGTCCTTACATTTATGAGCACTATAGTCCAGA  150

seq1  TGACAGGAAGTGCGGGTAAAGTCTCATGCCTGTCATCTTCCTATTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAAGTGCGGGTAAAGTCTCATGCCTGTCATCTTCCTATTCCCTC  200

seq1  CCACATGCTCTACTCCCATACCAATGATTTACTTTGAGGAGAGCCTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCTCTACTCCCATACCAATGATTTACTTTGAGGAGAGCCTAAAA  250

seq1  GGCCACATACTAAAACAATGTCTGATTTGGCTTTTGATTTCCATAGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATACTAAAACAATGTCTGATTTGGCTTTTGATTTCCATAGTCTC  300

seq1  CATACCAAACCTTAACAGCCCATCAGAATTCATTGGATCATATTTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAAACCTTAACAGCCCATCAGAATTCATTGGATCATATTTCAGCT  350

seq1  AGCCTTTTGTTCTTGAGGAAGTCTACTTAGAAGAATTAAGATGTAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTGTTCTTGAGGAAGTCTACTTAGAAGAATTAAGATGTAGTGAT  400

seq1  TTGTATATGTGTGTCAGCATTCCCAGTATTTAGAAGATATAATTAAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATGTGTGTCAGCATTCCCAGTATTTAGAAGATATAATTAAGCCA  450

seq1  GTTTAGTGTTGCTATCATTATGCAGATACATTGAGATCTATATATCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTGTTGCTATCATTATGCAGATACATTGAGATCTATATATCTAAA  500

seq1  CCACATTATGGAACTTTAGTGACCTTATTTTTATTGTATCCTGATATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTATGGAACTTTAGTGACCTTATTTTTATTGTATCCTGATATATT  550

seq1  TGTTATTATCCTAGATATCCATGTATGACTAATCATTATTACTCATTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTATCCTAGATATCCATGTATGACTAATCATTATTACTCATTAAC  600

seq1  TGTCATTAATTATATTTAAAATTGCTACTAAAATGATACATATTTTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTAATTATATTTAAAATTGCTACTAAAATGATACATATTTTAACA  650

seq1  TATACAATTGTATCCTGAAGGAATATCTTAGGTAAATGTTATATTATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATTGTATCCTGAAGGAATATCTTAGGTAAATGTTATATTATCTC  700

seq1  CTAATTTTTTTAGTGAGTTTTGCCAGACCTTTTAAGAGAGTTCAAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTTTTAGTGAGTTTTGCCAGACCTTTTAAGAGAGTTCAAGAGGA  750

seq1  CAATGAAGTAGGCATAACCTTTGTGGTGTTGTTGTATTGTTCTTTGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGTAGGCATAACCTTTGTGGTGTTGTTGTATTGTTCTTTGCTTT  800

seq1  TAATAAATATAGTTGAAAACCCAGAAATTTCTGCATCATCTAAAATAGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAATAAATATAGTTGAAAACCCAGAAATTTCTGCATCATCTAAAATAG-A  849

seq1  AACTGGAGAAAATTGACAGAGGATGATGTTTGGCAATTCAGAGTACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGAAAATTGACAGAGGATGATGTTTGGCAATTCAGAGTACATTT  899

seq1  TAGTCATGAGAATGAGAGTAAAATTATTCATGCGAATTTTTAGATT-CCT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGTCATGAGAATGAGAGTAAAATTATTCATGCGAATTTTTAGATTCCCT  949

seq1  TCCTGTCAAAATGTGTGACTAATGACTGAAGAATTCACTTCTAAGAACAA  999
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTGTC-AAATGTGTGACTAATGACTGAAGAATTCACTTCTAAGAAC-A  997

seq1  AAGAAAATCTATATTCCTAGCCAGTTTGTCAAAAAATGAAGGATCTAGCC  1049
      |||||||||||||||| ||||||| ||||||||||||| | |||||||||
seq2  AAGAAAATCTATATTCTTAGCCAG-TTGTCAAAAAATG-ATGATCTAGCC  1045

seq1  AAGCATTATTTACAAGAAAACCTGCATCATCTAACTTTGCATATAGTGC-  1098
      |||||||| |||||||||||||||||||||||||| ||||||||||||| 
seq2  AAGCATTA-TTACAAGAAAACCTGCATCATCTAAC-TTGCATATAGTGCA  1093

seq1  AGGTGACAGTAACTTTTTTCTC-TTTTAATATGAGACTTT  1137
      ||||||  || || |||||||| ||||||  |||||||||
seq2  AGGTGAACGTTACCTTTTTCTCTTTTTAAATTGAGACTTT  1133


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