BAC Information

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BAC

Clone NameB6Ng01-316L08
Chromosome18 (Build37)
Map Location 47,781,526 - 47,782,641
singlet/doubletsinglet
Overlap geneA730092B10
Upstream geneLOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik
Downstream geneLOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316L08.bB6Ng01-316L08.g
ACCGA107036GA107037
length1,1141,167
definitionB6Ng01-316L08.b B6Ng01-316L08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccaattttctagtcaccatagagagacaattcaaaatcatctaa
atcatgatgttctagacttttcaaaatacatatcttttctattttttttt
ttatttctgtgcttgagactttgagctggacaatgacgatgacgacgatg
ataatgatgatgattaatatcagtactatattatgaaatatacccaacaa
cccactgcaagaatgcttgtttgttctaaggaaaatggcttatgaatata
acattccagcaagagaagaatgatcaaactggctacaaacatctacattt
agaaatgttagatagccagaaataaaaaaaaaaaaacatttgaatataca
tatggacaagtgcatgcgaatattatgagaagaatagaacatgacctgat
tgaacatgaacacacttgccattgtattaatttacaaatgtccttgtaaa
cacgtagaaataattgaacctgtgagggtaatattttcttcctggagagg
atgtggggaatgaagtggctgataggatgggcagaggcagtttggtaatt
agctatattgttggagagtgttcacaagagcattctcatctattactcgc
ttaattaaaatgcacttgttatttaaattggaattattcgcatagttatg
agtataatatattgaacttccacaataatttattattaactatatctatg
cagtgaaccttactttaatatgattttgttctctatacatgtatttttgt
tatacatggaataaattttatatcattgtaaggctacctaaaaataaagg
tttgaaacaggtttgaaaaagctgtatttcctaacataatagcacataaa
actatttaaatttagattaacaaaacaattacttatgttgcataatgtca
tactgaagtgctcagtggccacatgtgactatggggctgccgtgttaggc
ttaccacatttaagaaactgtccatcgttcacagcaagggccaactggac
agtgcttgtttaaaacatccaatttcagatctttttctgtctttgaactg
tgcttgctttttgaaagtgaaactatacattttcatctgtcaacttggac
catctcaccttaac
gaattctcacccgaggaatactgaatggctgagatgcaccttaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctgaaaatcagtctggtggttcctca
gaaaattagacatagtactaccggaagatcccacaatacctctcctgggc
atatatccagaagatgtcccaaccgataagaaggacacaagctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaaagaatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
ggaactcaaatgatatgtactcactgataagtggatattagcccagaacc
ttagtatagcgagatataaggtacaatttgcaaaacacatgaaactgaag
aagaaggaagaccaaagtatggacactttgcccttcttagaattggaaac
aatcacccatggaaggagttacagagacaaagtttggagctgagacaaaa
ggattgaccatctagagacttccatatccagggatccatcccataattag
cctccaaacgatgacaccactgcatacactagcaagtgtttgttgcaagg
accatgatatagctatctcttgtgagactaggccggggcctagcaaacac
agaagtggatgctcacagtcaactattggatggatcacagggcccccaat
ggaggagctagaagaaagtatccaaagagctaagagatcctccaacccct
gtagtgcacatatgaactatccattacccagagctctgactctagctgca
tatgtatcaaagattgcctagttcgcatcactggaagagagcccaatgta
catgccaaccttaatgccagtacaggcatcgccaggctaaaaattggtaa
tatgggggggggaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47781526_47782641
seq2: B6Ng01-316L08.b_48_1161

seq1  GAATTCCCAATTTTCTAGTCACCATAGAGAGACAATTCAAAATCATCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAATTTTCTAGTCACCATAGAGAGACAATTCAAAATCATCTAA  50

seq1  ATCATGATGTTCTAGACTTTTCAAAATACATATCTTTTCTATTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATGTTCTAGACTTTTCAAAATACATATCTTTTCTATTTTTTTTT  100

seq1  TTATTTCTGTGCTTGAGACTTTGAGCTGGACAATGACGATGACGACGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTGTGCTTGAGACTTTGAGCTGGACAATGACGATGACGACGATG  150

seq1  ATAATGATGATGATTAATATCAGTACTATATTATGAAATATACCCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATGATGATTAATATCAGTACTATATTATGAAATATACCCAACAA  200

seq1  CCCACTGCAAGAATGCTTGTTTGTTCTAAGGAAAATGGCTTATGAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCAAGAATGCTTGTTTGTTCTAAGGAAAATGGCTTATGAATATA  250

seq1  ACATTCCAGCAAGAGAAGAATGATCAAACTGGCTACAAACATCTACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCAGCAAGAGAAGAATGATCAAACTGGCTACAAACATCTACATTT  300

seq1  AGAAATGTTAGATAGCCAGAAATAAAAAAAAAAAAACATTTGAATATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTAGATAGCCAGAAATAAAAAAAAAAAAACATTTGAATATACA  350

seq1  TATGGACAAGTGCATGCGAATATTATGAGAAGAATAGAACATGACCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACAAGTGCATGCGAATATTATGAGAAGAATAGAACATGACCTGAT  400

seq1  TGAACATGAACACACTTGCCATTGTATTAATTTACAAATGTCCTTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGAACACACTTGCCATTGTATTAATTTACAAATGTCCTTGTAAA  450

seq1  CACGTAGAAATAATTGAACCTGTGAGGGTAATATTTTCTTCCTGGAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAGAAATAATTGAACCTGTGAGGGTAATATTTTCTTCCTGGAGAGG  500

seq1  ATGTGGGGAATGAAGTGGCTGATAGGATGGGCAGAGGCAGTTTGGTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGAATGAAGTGGCTGATAGGATGGGCAGAGGCAGTTTGGTAATT  550

seq1  AGCTATATTGTTGGAGAGTGTTCACAAGAGCATTCTCATCTATTACTCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATTGTTGGAGAGTGTTCACAAGAGCATTCTCATCTATTACTCGC  600

seq1  TTAATTAAAATGCACTTGTTATTTAAATTGGAATTATTCGCATAGTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAAATGCACTTGTTATTTAAATTGGAATTATTCGCATAGTTATG  650

seq1  AGTATAATATATTGAACTTCCACAATAATTTATTATTAACTATATCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATATATTGAACTTCCACAATAATTTATTATTAACTATATCTATG  700

seq1  CAGTGAACCTTACTTTAATATGATTTTGTTCTCTATACATGTA-TTTTGT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGTGAACCTTACTTTAATATGATTTTGTTCTCTATACATGTATTTTTGT  750

seq1  TATACATGGAATAAATTTTATATCATTGTAAGGCTACCTAAAAATAAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGGAATAAATTTTATATCATTGTAAGGCTACCTAAAAATAAAGG  800

seq1  TTTGAAACAGGTTTGAAAAAGCTGTATTTCCTAACATAATAGCACATAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACAGGTTTGAAAAAGCTGTATTTCCTAACATAATAGCACATAAA  850

seq1  ACTATTTAAATTTAGATTAACAAAACAATTACTTATGTTGCAT-ATGTCA  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTATTTAAATTTAGATTAACAAAACAATTACTTATGTTGCATAATGTCA  900

seq1  TACTGAAGTGCTCAGTGGCCACATGTGACTAT-GGGCTGCCGTGTTAGGC  947
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACTGAAGTGCTCAGTGGCCACATGTGACTATGGGGCTGCCGTGTTAGGC  950

seq1  TTA-CACATTT-AGAAACTGTCCATCG-TCACAGCAAGGG-CAACTGGAC  993
      ||| ||||||| ||||||||||||||| |||||||||||| |||||||||
seq2  TTACCACATTTAAGAAACTGTCCATCGTTCACAGCAAGGGCCAACTGGAC  1000

seq1  AGTGCTGGTTAAAACCATCCAATTTTCAGATTCTTTTCTGTCTTTTGAAA  1043
      |||||| ||| ||| ||||||| ||||||||  ||||||||||||   ||
seq2  AGTGCTTGTTTAAAACATCCAA-TTTCAGATCTTTTTCTGTCTTT--GAA  1047

seq1  CTGTGGCTTGCTTTTTGAAAGGTGAAAACCTATACATTTTCATCTGTCAA  1093
      |||| ||||||||||||||| ||||||  |||||||||||||||||||||
seq2  CTGT-GCTTGCTTTTTGAAA-GTGAAA--CTATACATTTTCATCTGTCAA  1093

seq1  CTTTTGACACATCTCAACTTAAC  1116
      | || ||| ||||||| ||||||
seq2  C-TTGGAC-CATCTCACCTTAAC  1114