BAC Information

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BAC

Clone NameB6Ng01-320C16
Chromosome18 (Build37)
Map Location 55,853,959 - 56,035,172
singlet/doubletdoublet
Overlap geneLOC667401, LOC667409, LOC629043
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320C16.bB6Ng01-320C16.g
ACCGA109610GA109611
length3371,141
definitionB6Ng01-320C16.b B6Ng01-320C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,853,959 - 55,854,295)(56,034,020 - 56,035,172)
sequence
cttcttactttggaaacaaccttccatcgagcaaaagactaaaaaggggc
ttaaaaaaaaaagtacactcccttgccagaacatatctccatcatgttag
caaagtgccacagatttgctggagaggagattctgtatttatgcagagca
ttgccatctagatgagggtatttgctcgttttttgttttttgtttttttt
ttttgtttttttatttcatgacaccaccccacccccacccccacccccac
ccccacccccacccccaccccgtccagctagcgggattgaatttccaaac
tgagcgttctatttggcggcagtgggaggtgggggaa
gaattcctcagaaatatgagccaaatccttaaaattgatttatttttcct
caagatctagttatttagcagtactctatcttacaaactgtatttatagt
gctatctgtggtaaagatgatgagggtcttgcttatcatccctcactgca
ttcattggaaataaattaaagaggctagtagcttgcaccaactagtgcta
atattaagagtggagctaagattcatcattagtgtcctatctccagaggt
ctataattcccaccacaacagaaccatgaacttatattgtcctgcaaatc
tttgaggaaattctcagtgtgttttcagtcatttctggttataacacagt
tctctgtccttggtgctggatcacaggacagtaaaaaatagttccttgtc
acgtggagcttctagaggagtggagaccagacagagtatgcatgagatac
tagtcctgccttcggtttttaacaatacaagtccaataatatcatgtcca
tattctgactcttaacttctagatctaaaattagagttagagaaaagtgc
tgaaaaagaagggtagggaatcgatgccagttccttttaaaaaattcagc
tctctagaaacccagccttgagttagcaccctagtgacttgagagcagtg
atttgataaatgtccactaaagtcagttacatttaaagtgaggaccagag
gaagatggtagaatacagttatagagttttcttgagaaacaatgccaaat
attttacaaagagattcacctcacggtgacaagttcaaattccaatttta
tttatttgagaatgaggaaacacatttgtgtgtggctgcttaggactttt
aaaatttgaaaatgttttttttttccatacaatatattctgaatgtggtt
ctccctctttcagctcctccaagatcctcccccatctccccaccccatcc
aatctaacaactcttttctgttctcttattagaatcaataggaatctaaa
aagaaaatataataaaataagatgaaataaaactagtcacatcttgtatt
agaatagatagatagacatacacatgcaaagacagcccagagcgagaaaa
atttaggaagacggacctagatacaccacggttggcacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55853959_55854295
seq2: B6Ng01-320C16.b_50_386

seq1  CTTCTTACTTTGGAAACAACCTTCCATCGAGCAAAAGACTAAAAAGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACTTTGGAAACAACCTTCCATCGAGCAAAAGACTAAAAAGGGGC  50

seq1  TTAAAAAAAAAAGTACACTCCCTTGCCAGAACATATCTCCATCATGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAGTACACTCCCTTGCCAGAACATATCTCCATCATGTTAG  100

seq1  CAAAGTGCCACAGATTTGCTGGAGAGGAGATTCTGTATTTATGCAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGCCACAGATTTGCTGGAGAGGAGATTCTGTATTTATGCAGAGCA  150

seq1  TTGCCATCTAGATGAGGGTATTTGCTCGTTTTTTGTTTTTTGTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCTAGATGAGGGTATTTGCTCGTTTTTTGTTTTTTGTTTTTTTT  200

seq1  TTTTGTTTTTTTATTTCATGACACCACCCCACCCCCACCCCCACCCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTATTTCATGACACCACCCCACCCCCACCCCCACCCCCAC  250

seq1  CCCCACCCCCACCCCCACCCCGTCCAGCTAGCGGGATTGAATTTCAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCCACCCCCACCCCCACCCCGTCCAGCTAGCGGGATTGAATTTCCAAAC  300

seq1  TGAGCGTTCTTTTTGGTGGCAGTGGGAGGTGGGGGAA  337
      |||||||||| ||||| ||||||||||||||||||||
seq2  TGAGCGTTCTATTTGGCGGCAGTGGGAGGTGGGGGAA  337

seq1: chr18_56034020_56035172
seq2: B6Ng01-320C16.g_64_1204 (reverse)

seq1  GGTGTGCCAA-CGTGTGTGTATCTATGTCTGTCTTTTTCTTATATTTTTC  49
      |||||||||| |||| ||||||||| ||| |||   ||| || |||||||
seq2  GGTGTGCCAACCGTG-GTGTATCTAGGTCCGTC---TTCCTAAATTTTTC  46

seq1  TTCGGCTCTTGGCCTGTCTTTTCATGTGTATGTCTTATTCTATCTTATTC  99
      |   |||| ||| |||||||| |||||||||||||   |||||| |||||
seq2  T--CGCTC-TGGGCTGTCTTTGCATGTGTATGTCT--ATCTATC-TATTC  90

seq1  T-ATAC-AGATGTGACTAGTTTTATTTCATCTTATTTTATTATTATTTTT  147
      | |||| ||||||||||||||||||||||||||||||||||| |||||| 
seq2  TAATACAAGATGTGACTAGTTTTATTTCATCTTATTTTATTA-TATTTT-  138

seq1  CTTTTTTAGATTCCTATTTGATTTCTAATAAGAGAACAAGAAAGAGTTGT  197
        |||||||||||||| |||| ||||||||||||||||  ||||||||| 
seq2  -CTTTTTAGATTCCTA-TTGA-TTCTAATAAGAGAACAGAAAAGAGTTG-  184

seq1  TTAGATTTGGAT-GGGTGGGGAGATGGGGGAGGATCTTGGAGGAGCTGAA  246
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  TTAGA-TTGGATGGGGTGGGGAGATGGGGGAGGATCTTGGAGGAGCTGAA  233

seq1  AGAGGGAGAACCACATTCAGAATATATTGTATGG-AAAAAAAAACATTTT  295
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGGGAGAACCACATTCAGAATATATTGTATGGAAAAAAAAAACATTTT  283

seq1  CAAATTTTAAAAGTCCTAAGCAGCCACACACAAATGTGTTTCCTCATTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTAAAAGTCCTAAGCAGCCACACACAAATGTGTTTCCTCATTCT  333

seq1  CAAATAAATAAAATTGGAATTTGAACTTGTCACCGTGAGGTGAATCTCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAATAAAATTGGAATTTGAACTTGTCACCGTGAGGTGAATCTCTT  383

seq1  TGTAAAATATTTGGCATTGTTTCTCAAGAAAACTCTATAACTGTATTCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATATTTGGCATTGTTTCTCAAGAAAACTCTATAACTGTATTCTA  433

seq1  CCATCTTCCTCTGGTCCTCACTTTAAATGTAACTGACTTTAGTGGACATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCTCTGGTCCTCACTTTAAATGTAACTGACTTTAGTGGACATT  483

seq1  TATCAAATCACTGCTCTCAAGTCACTAGGGTGCTAACTCAAGGCTGGGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATCACTGCTCTCAAGTCACTAGGGTGCTAACTCAAGGCTGGGTT  533

seq1  TCTAGAGAGCTGAATTTTTTAAAAGGAACTGGCATCGATTCCCTACCCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAGCTGAATTTTTTAAAAGGAACTGGCATCGATTCCCTACCCTT  583

seq1  CTTTTTCAGCACTTTTCTCTAACTCTAATTTTAGATCTAGAAGTTAAGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAGCACTTTTCTCTAACTCTAATTTTAGATCTAGAAGTTAAGAG  633

seq1  TCAGAATATGGACATGATATTATTGGACTTGTATTGTTAAAAACCGAAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATGGACATGATATTATTGGACTTGTATTGTTAAAAACCGAAGG  683

seq1  CAGGACTAGTATCTCATGCATACTCTGTCTGGTCTCCACTCCTCTAGAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTAGTATCTCATGCATACTCTGTCTGGTCTCCACTCCTCTAGAAG  733

seq1  CTCCACGTGACAAGGAACTATTTTTTACTGTCCTGTGATCCAGCACCAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGTGACAAGGAACTATTTTTTACTGTCCTGTGATCCAGCACCAAG  783

seq1  GACAGAGAACTGTGTTATAACCAGAAATGACTGAAAACACACTGAGAATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAACTGTGTTATAACCAGAAATGACTGAAAACACACTGAGAATT  833

seq1  TCCTCAAAGATTTGCAGGACAATATAAGTTCATGGTTCTGTTGTGGTGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAGATTTGCAGGACAATATAAGTTCATGGTTCTGTTGTGGTGGG  883

seq1  AATTATAGACCTCTGGAGATAGGACACTAATGATGAATCTTAGCTCCACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGACCTCTGGAGATAGGACACTAATGATGAATCTTAGCTCCACT  933

seq1  CTTAATATTAGCACTAGTTGGTGCAAGCTACTAGCCTCTTTAATTTATTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATTAGCACTAGTTGGTGCAAGCTACTAGCCTCTTTAATTTATTT  983

seq1  CCAATGAATGCAGTGAGGGATGATAAGCAAGACCCTCATCATCTTTACCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAATGCAGTGAGGGATGATAAGCAAGACCCTCATCATCTTTACCA  1033

seq1  CAGATAGCACTATAAATACAGTTTGTAAGATAGAGTACTGCTAAATAACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCACTATAAATACAGTTTGTAAGATAGAGTACTGCTAAATAACT  1083

seq1  AGATCTTGAGGAAAAATAAATCAATTTTAAGGATTTGGCTCATATTTCTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGAGGAAAAATAAATCAATTTTAAGGATTTGGCTCATATTTCTG  1133

seq1  AGGAATTC  1153
      ||||||||
seq2  AGGAATTC  1141