BAC Information

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BAC

Clone NameB6Ng01-320L03
Chromosome18 (Build37)
Map Location 71,613,216 - 71,729,835
singlet/doubletdoublet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320L03.bB6Ng01-320L03.g
ACCGA110001GA110002
length1,1741,099
definitionB6Ng01-320L03.b B6Ng01-320L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,728,657 - 71,729,835)(71,613,216 - 71,614,325)
sequence
gaattcagaatgtcttttagaaagcagacactgaaccgcatcattcaact
catttatactgagtactctgcagcttacttattacatttattatagacat
tatgataaataaattgcattattatagctaatagatgctacaataaatgc
catttgagcaacatgaaaacatcactaaggtttcttaataactccccaaa
tgttgaggaagatggtatactgaagagatctagggttctcccagtcatta
cttttatatgtatatatcactgtctatatttttagagaaagtacagagtt
gaaattcattgtgccgtttgagagatgcaaacaaaagaggagaaattttg
tcagtattttccactaacagaactattttatcctttgaaagcagatctca
tctgagtttatatttagcttttgcttttactgctgtttccccaaatgtga
tgtcgtcattatacatggccactgcaccacctttatacaaacttaatgtc
cagactttcattttatttgagtaatctgttccattaggaaaattgtgttt
tcaaggaataaagcccggtacaaatttgtgtgaaatataaatcatcaaca
actgtttctataagtgcatgcattctgctgcaatcatttagaaagatcaa
cagtctgagatccagtttataaaataatagcctggaatagaagagcttga
tttttatgaaggcttgtgtcctctgattatatcttccttttgctaaacct
ttgcccttttctcccttgcttttgtggtgtgtaatttctccacagtatta
tcaggcaggatttaagtccctgcctgcctaagacatgtctaatcttttca
taccacatgtggtgcatttttgtattatgtggggtccccaaaatgctatt
aggcagtttaatcataaaggatgttaaaatggaccacatacaggctcgag
ggcctgagtaacaatacaaatcctgtttgctcaagcacagcacattttct
gtaaaattctttttgtggttaagattgtagaaattattcttagtttcctg
ttattctttacacagttaagatagtggaaagcaacctccaagctgatatt
ataatgcaataacaataaatgtatagctagctacatttttcttgcttaat
tattttttattacggcaggtttct

gaattccatagcattaagctgtggaggggaaaaccaaagcaatagagagc
tgggatgttgtttatggcagagacattaatggtgtggaaagctgaggtaa
agaataaatagaacaagcaaagaaggagtaccttatgcttgcagcttgta
gaggagttagatgtgtggggctacccaagcatgatggagactaatgatgt
ctctaggagttctagatgctggccatggagctgaagaatttggtggttgt
ctttctctgcttgatcttgcttgcagttgatcttttattattatatacca
caaattccttcttataacagaagtacttattctttctttattttttattt
ttattttttactccagattttattcccctccgggtctaccctctgactgt
ttcatatcccatacctcctcccctccccttgtctcctttataatcatgta
gaagtacatttttattcactaaaagatgaaggcaacttattgaaggttta
ctcatgtttccttaaaacacaatagataatttcattttcccataatatgt
gtttaaaaattccagtggccaatgagaaacatgttactactaaaacacac
acacacacacacacacacacacacacactcagaaaaaaaagaaagagaga
atatcctatttatgaaagggtagaatagaaagttggacatccaggaggag
gaaaagtctgagatcgagccacgtaagagctttgcctagggaaatgtgaa
aagagagacacatagtacatgagcacaggtaatcagtcacatggaagaat
gtagattaaaataagtgggataaatttaagttatgctctaataagataaa
gcctagctatgtgggccaagacatttataatatattttgagtctgagtct
tatttctgttgggaggaagaaccatgcataacttctacagcagagacaga
cagaggaaactgagacacaccagacagacaacagacagaacagacagaca
gacagacggacggactggacgacggacggacggacgaaagacgacgacga
ctgacgacgacggatgatgatgataaaaagagacgggaacctcattgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71728657_71729835
seq2: B6Ng01-320L03.b_49_1222 (reverse)

seq1  AGAACCCTGCCGTAATAAAAAAAATAATTAAAGCAAG-AAAATGTAACTA  49
      |||| |||||||||||  ||||||||||| ||||||| |||||||| |||
seq2  AGAAACCTGCCGTAAT--AAAAAATAATT-AAGCAAGAAAAATGTAGCTA  47

seq1  GCTATACATTTA-TGTTA-TGCATTTATAAATTAATCAGCTTGGAAGGTT  97
      |||||||||||| ||||| |||| ||||||    |||||||||| |||||
seq2  GCTATACATTTATTGTTATTGCA-TTATAA---TATCAGCTTGG-AGGTT  92

seq1  GCTTT-CACTATCTT-ACTGTGTAAAGAAT-ACAGGAAACTTAAGAATAT  144
      ||||| ||||||||| |||||||||||||| ||||||||| |||||||| 
seq2  GCTTTCCACTATCTTAACTGTGTAAAGAATAACAGGAAAC-TAAGAATAA  141

seq1  TTCTTACAATTCTTAACCAC-AAAAGAATTTTACAGAAAATTGTGCTGTG  193
      ||  ||||| |||||||||| ||||||||||||||||||| |||||||||
seq2  TTTCTACAA-TCTTAACCACAAAAAGAATTTTACAGAAAA-TGTGCTGTG  189

seq1  CTTGAGCAAACAGGATTTGTATTGTTACTCAGGCCCTCGAGCCTGTATGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCAAACAGGATTTGTATTGTTACTCAGGCCCTCGAGCCTGTATGT  239

seq1  GGTCCATTTTAACATCCTTTATGATTAAACTGCCTTAATAGCATTTTGGG  293
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTCCATTTTAACATCCTTTATGATTAAACTGCC-TAATAGCATTTTGGG  288

seq1  GACCCCACATAATACAAAAATGCACCACATGTGGTATGAAAAGATTAGAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCACATAATACAAAAATGCACCACATGTGGTATGAAAAGATTAGAC  338

seq1  ATGTCTTAGGCAGGCAGGGACTTAAATCCTGCCTGATAATACTGTGGAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAGGCAGGCAGGGACTTAAATCCTGCCTGATAATACTGTGGAGA  388

seq1  AATTACACACCACAAAAGCAAGGGAGAAAAGGGCAAAGGTTTAGCAAAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACACCACAAAAGCAAGGGAGAAAAGGGCAAAGGTTTAGCAAAAG  438

seq1  GAAGATATAATCAGAGGACACAAGCCTTCATAAAAATCAAGCTCTTCTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATAATCAGAGGACACAAGCCTTCATAAAAATCAAGCTCTTCTAT  488

seq1  TCCAGGCTATTATTTTATAAACTGGATCTCAGACTGTTGATCTTTCTAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTATTATTTTATAAACTGGATCTCAGACTGTTGATCTTTCTAAA  538

seq1  TGATTGCAGCAGAATGCATGCACTTATAGAAACAGTTGTTGATGATTTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCAGCAGAATGCATGCACTTATAGAAACAGTTGTTGATGATTTAT  588

seq1  ATTTCACACAAATTTGTACCGGGCTTTATTCCTTGAAAACACAATTTTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACACAAATTTGTACCGGGCTTTATTCCTTGAAAACACAATTTTCC  638

seq1  TAATGGAACAGATTACTCAAATAAAATGAAAGTCTGGACATTAAGTTTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAACAGATTACTCAAATAAAATGAAAGTCTGGACATTAAGTTTGT  688

seq1  ATAAAGGTGGTGCAGTGGCCATGTATAATGACGACATCACATTTGGGGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGTGGTGCAGTGGCCATGTATAATGACGACATCACATTTGGGGAA  738

seq1  ACAGCAGTAAAAGCAAAAGCTAAATATAAACTCAGATGAGATCTGCTTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTAAAAGCAAAAGCTAAATATAAACTCAGATGAGATCTGCTTTC  788

seq1  AAAGGATAAAATAGTTCTGTTAGTGGAAAATACTGACAAAATTTCTCCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATAAAATAGTTCTGTTAGTGGAAAATACTGACAAAATTTCTCCTC  838

seq1  TTTTGTTTGCATCTCTCAAACGGCACAATGAATTTCAACTCTGTACTTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGCATCTCTCAAACGGCACAATGAATTTCAACTCTGTACTTTC  888

seq1  TCTAAAAATATAGACAGTGATATATACATATAAAAGTAATGACTGGGAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATATAGACAGTGATATATACATATAAAAGTAATGACTGGGAGA  938

seq1  ACCCTAGATCTCTTCAGTATACCATCTTCCTCAACATTTGGGGAGTTATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGATCTCTTCAGTATACCATCTTCCTCAACATTTGGGGAGTTATT  988

seq1  AAGAAACCTTAGTGATGTTTTCATGTTGCTCAAATGGCATTTATTGTAGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCTTAGTGATGTTTTCATGTTGCTCAAATGGCATTTATTGTAGC  1038

seq1  ATCTATTAGCTATAATAATGCAATTTATTTATCATAATGTCTATAATAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAGCTATAATAATGCAATTTATTTATCATAATGTCTATAATAAA  1088

seq1  TGTAATAAGTAAGCTGCAGAGTACTCAGTATAAATGAGTTGAATGATGCG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGTAAGCTGCAGAGTACTCAGTATAAATGAGTTGAATGATGCG  1138

seq1  GTTCAGTGTCTGCTTTCTAAAAGACATTCTGAATTC  1179
      ||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGTCTGCTTTCTAAAAGACATTCTGAATTC  1174


seq1: chr18_71613216_71614325
seq2: B6Ng01-320L03.g_66_1164

seq1  GAATTCCATAGCATTAAGCTGTGGAGGGGAAAACCAAAGCAATAGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGCATTAAGCTGTGGAGGGGAAAACCAAAGCAATAGAGAGC  50

seq1  TGGGATGTTGTTTATGGCAGAGACATTAATGGTGTGGAAAGCTGAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTTGTTTATGGCAGAGACATTAATGGTGTGGAAAGCTGAGGTAA  100

seq1  AGAATAAATAGAACAAGCAAAGAAGGAGTACCTTATGCTTGCAGCTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATAGAACAAGCAAAGAAGGAGTACCTTATGCTTGCAGCTTGTA  150

seq1  GAGGAGTTAGATGTGTGGGGCTACCCAAGCATGATGGAGACTAATGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTAGATGTGTGGGGCTACCCAAGCATGATGGAGACTAATGATGT  200

seq1  CTCTAGGAGTTCTAGATGCTGGCCATGGAGCTGAAGAATTTGGTGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAGTTCTAGATGCTGGCCATGGAGCTGAAGAATTTGGTGGTTGT  250

seq1  CTTTCTCTGCTTGATCTTGCTTGCAGTTGATCTTTTATTATTATATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCTTGATCTTGCTTGCAGTTGATCTTTTATTATTATATACCA  300

seq1  CAAATTCCTTCTTATAACAGAAGTACTTATTCTTTCTTTATTTTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCTTCTTATAACAGAAGTACTTATTCTTTCTTTATTTTTTATTT  350

seq1  TTATTTTTTACTCCAGATTTTATTCCCCTCCGGGTCTACCCTCTGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTACTCCAGATTTTATTCCCCTCCGGGTCTACCCTCTGACTGT  400

seq1  TTCATATCCCATACCTCCTCCCCTCCCCTTGTCTCCTTTATAATCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCCCATACCTCCTCCCCTCCCCTTGTCTCCTTTATAATCATGTA  450

seq1  GAAGTACATTTTTATTCACTAAAAGATGAAGGCAACTTATTGAAGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACATTTTTATTCACTAAAAGATGAAGGCAACTTATTGAAGGTTTA  500

seq1  CTCATGTTTCCTTAAAACACAATAGATAATTTCATTTTCCCATAATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTTCCTTAAAACACAATAGATAATTTCATTTTCCCATAATATGT  550

seq1  GTTTAAAAATTCCAGTGGCCAATGAGAAACATGTTACTACTAAAACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAATTCCAGTGGCCAATGAGAAACATGTTACTACTAAAACACAC  600

seq1  ACACACACACACACACACACACACACACTCAGAAAAAAAAGAAAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACTCAGAAAAAAAAGAAAGAGAGA  650

seq1  ATATCCTATTTATGAAAGGGTAGAATAGAAAGTTGGACATCCAGGAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTATTTATGAAAGGGTAGAATAGAAAGTTGGACATCCAGGAGGAG  700

seq1  GAAAAGTCTGAGATCGAGCCACGTAAGAGCTTTGCCTAGGGAAATGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTGAGATCGAGCCACGTAAGAGCTTTGCCTAGGGAAATGTGAA  750

seq1  AAGAGAGACACATAGTACATGAGCACAGGTAATCAGTCACATGGAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACACATAGTACATGAGCACAGGTAATCAGTCACATGGAAGAAT  800

seq1  GTAGATTAAAATAAGTGGGATAAATTTAAGTTATGCTCTAATAAGATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTAAAATAAGTGGGATAAATTTAAGTTATGCTCTAATAAGATAAA  850

seq1  GCCTAGCTATGT-GGCCAAGACATTTATAATATATTTTGAGTCTGAGTCT  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCTATGTGGGCCAAGACATTTATAATATATTTTGAGTCTGAGTCT  900

seq1  TATTTCTGTTGGGAGGAAGAACCATGCATAACTTCTACAGCAAGAGACAG  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTTCTGTTGGGAGGAAGAACCATGCATAACTTCTACAGC-AGAGACAG  949

seq1  ACAGA-GAAACTGAGACACACCAGACAGACAAACAGACAG-ACAGACAGA  997
      ||||| |||||||||||||||||||||||| ||||||||| |||||||||
seq2  ACAGAGGAAACTGAGACACACCAGACAGAC-AACAGACAGAACAGACAGA  998

seq1  CAGACAGACGGACGGAC-GGACGGACGGACGGACAGACAGAAAGACAGAC  1046
      ||||||||||||||||| |||| ||||||||||| ||| ||||||| |||
seq2  CAGACAGACGGACGGACTGGAC-GACGGACGGACGGAC-GAAAGAC-GAC  1045

seq1  AGACAGACAGACAGACAGACAGATAGATAGATAGATTAAAAAAGAGACAG  1096
       ||| ||| ||| ||| ||| ||| ||| ||| |||  |||||||||| |
seq2  -GAC-GACTGAC-GAC-GACGGAT-GAT-GAT-GAT--AAAAAGAGAC-G  1085

seq1  GGGACCTCATTGCA  1110
      || |||||||||||
seq2  GGAACCTCATTGCA  1099


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