BAC Information

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BAC

Clone NameB6Ng01-321N04
Chromosome10 (Build37)18 (Build37)
Map Location 124,024,450 - 124,025,64450,046,866 - 50,047,361
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAI851790, 4930503E24Rik
Downstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321N04.bB6Ng01-321N04.g
ACCGA110831GA110832
length1,193879
definitionB6Ng01-321N04.b B6Ng01-321N04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,024,450 - 124,025,644)(50,046,866 - 50,047,361)
sequence
gaattctagaacatgtattgcatctgcatcaatggtcttgtcaagaatgt
tgtcaccacaagctgggacaatgtgaagacaacttagtaattcatgttct
ataagagttgggtgtagcttctaaggtcctctgcaggctgctgaccaagt
cttcttgcaaatcaagaccaataagtctacccagttgatacagttcctga
gtacctctgtgctcataaatggcattattgtatattctaataatagatta
actaatatgatactaaaccctttctgggcatacagtattttgactctgtc
tagtccctgacataccataacttctctcactatgtgaagtatacagtctc
agcagcccaatacaatagaaggctatgtgtgtcacagagaatctattctc
tggattgctcaacttggagcaaaggaaaaccacaaccacagagtccttct
cttctttgtgtcatgaccagctggtcaccatcatccaaaactggttagga
tgggatatccataagaccctcttatttctggatatccataagtttaaatt
ttaacattatttgtgatgtaggcattgataaggacctattcagcaacaat
attgaccacaaggattcattaaccaaatacaggaaatgatcactgtcctg
gcaccatccagatctttgctcctatgtgtagcttaggtctattcttctgc
catggccttcctctgaatgctctagctcttctgaatcaataaacataagc
agaaaaattcagtgtcctccattatgcagcctaaaatttgtctaaaataa
agaacatttattaaacagctacaaatatgccatatgagttgattcagttt
agtttggcaaatgtgtattctcttactagcatgtctaaactagactaagc
ctttgaaaatagatgtatccttgaatttcctgtctgattttaacacaaca
gtggcacatttttgcttattttgaccttgtgttcagttaaagttttcttt
gggataacacttagtataactgtgcctcttatgatttaaagtctgtgctt
tgtttttctttgcagtctgtaagttcttttgttggactagatggtggcca
ggtagatgacttcatgactatttgtccttagtcaagtgggtaacaatgga
gagttgccttagacttggaagccttcagactccttacacctgt

gaattctaaattttcctgacaggatgtgatggtacaaagaaagccccttt
ctgcctgtcatcttttaggactgatccctctattgggtaaatttcctgca
gatcaacatgaagatgactttcattgagctaatgctgttcagaatggttt
tgtatggtttttggccttctatatgttttctgcatacttcttgcaacatg
acagaaatgtctttttgttttgtcttgtttttgaatgggacttttttctt
ccattattttgttaaaaatcttctttgtgttatctttacctttttaaatt
catttacctctataactgattattgataggtttgaccatttcatagtgtt
ccagatttcctggatgttttatgtttgaatctttttagatttaaattttc
ctttgattaatgtatccattttactaccttgtcctcttccttatatgtct
tttaagttttcgatgaagtttacccacaaaatttacatttgaaatcttga
agttttttgtgtacacttttattttagcttgggttttctttggtgattca
gtttgttcattaaattgttttatgtcttattgatttattatttcattcac
atttaaaataatctcttttaaaaataatcgtttacgtcatatattcatgt
ccctttttgtgtctttgaacaaataataataataattataatgatgataa
ttattattattattaatttggaattctttgcttatcaattgattttctca
tgacctacctcagtatagttcctggattttaaggaggcctattgtcttgt
ttttctttttttttttttttttccattttttattaggtatttaactcatt
acatttccaatgctataacaaaagtcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_124024450_124025644
seq2: B6Ng01-321N04.b_46_1238

seq1  GAATTCTAGAACATGTATTGCATCTGCATCAATGGTCTTGTCAAGAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAACATGTATTGCATCTGCATCAATGGTCTTGTCAAGAATGT  50

seq1  TGTCACCACAAGCTGGGACAATGTGAAGACAACTTAGTAATTCATGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCACAAGCTGGGACAATGTGAAGACAACTTAGTAATTCATGTTCT  100

seq1  ATAAGAGTTGGGTGTAGCTTCTAAGGTCCTCTGCAGGCTGCTGACCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTTGGGTGTAGCTTCTAAGGTCCTCTGCAGGCTGCTGACCAAGT  150

seq1  CTTCTTGCAAATCAAGACCAATAAGTCTACCCAGTTGATACAGTTCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCAAATCAAGACCAATAAGTCTACCCAGTTGATACAGTTCCTGA  200

seq1  GTACCTCTGTGCTCATAAATGGCATTATTGTATATTCTAATAATAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTGTGCTCATAAATGGCATTATTGTATATTCTAATAATAGATTA  250

seq1  ACTAATATGATACTAAACCCTTTCTGGGCATACAGTATTTTGACTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATGATACTAAACCCTTTCTGGGCATACAGTATTTTGACTCTGTC  300

seq1  TAGTCCCTGACATACCATAACTTCTCTCACTATGTGAAGTATACAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCTGACATACCATAACTTCTCTCACTATGTGAAGTATACAGTCTC  350

seq1  AGCAGCCCAATACAATAGAAGGCTATGTGTGTCACAGAGAATCTATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCAATACAATAGAAGGCTATGTGTGTCACAGAGAATCTATTCTC  400

seq1  TGGATTGCTCAACTTGGAGCAAAGGAAAACCACAACCACAGAGTCCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCTCAACTTGGAGCAAAGGAAAACCACAACCACAGAGTCCTTCT  450

seq1  CTTCTTTGTGTCATGACCAGCTGGTCACCATCATCCAAAACTGGTTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGTGTCATGACCAGCTGGTCACCATCATCCAAAACTGGTTAGGA  500

seq1  TGGGATATCCATAAGACCCTCTTATTTCTGGATATCCATAAGTTTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATATCCATAAGACCCTCTTATTTCTGGATATCCATAAGTTTAAATT  550

seq1  TTAACATTATTTGTGATGTAGGCATTGATAAGGACCTATTCAGCAACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTATTTGTGATGTAGGCATTGATAAGGACCTATTCAGCAACAAT  600

seq1  ATTGACCACAAGGATTCATTAACCAAATACAGGAAATGATCACTGTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCACAAGGATTCATTAACCAAATACAGGAAATGATCACTGTCCTG  650

seq1  GCACCATCCAGATCTTTGCTCCTATGTGTAGCTTAGGTCTATTCTTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATCCAGATCTTTGCTCCTATGTGTAGCTTAGGTCTATTCTTCTGC  700

seq1  CATGGCCTTCCTCTGAATGCTCTAGCTCTTCTGAATCAATAAACATAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTTCCTCTGAATGCTCTAGCTCTTCTGAATCAATAAACATAAGC  750

seq1  AGAAAAATTCAGTGTCCTCCATTATGCAGCCTAAAATTTGTCTAAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTCAGTGTCCTCCATTATGCAGCCTAAAATTTGTCTAAAATAA  800

seq1  AGAACATTTATTAAACAGCTACAAATATGCCATATGAGTTGATTCAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTTATTAAACAGCTACAAATATGCCATATGAGTTGATTCAGTTT  850

seq1  AGTTTGGCAAATGTGTATTCTCTTACTAGCATGTCTAAACTAGACTAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGCAAATGTGTATTCTCTTACTAGCATGTCTAAACTAGACTAAGC  900

seq1  CTTTGAAAATAGATGTATCCTTGAATTTCCTGTCTGATTTTAACACAAAC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTGAAAATAGATGTATCCTTGAATTTCCTGTCTGATTTTAACAC-AAC  949

seq1  AGTGGCACATTTTTGCTTATTTTGACCTTGTGTTCAGTTAAAGTTTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACATTTTTGCTTATTTTGACCTTGTGTTCAGTTAAAGTTTTCTT  999

seq1  TGGGAT-ACACTTAGTAT-ACTGTGCCTC-TATGATTTAAAGTCTGTGCT  1047
      |||||| ||||||||||| |||||||||| ||||||||||||||||||||
seq2  TGGGATAACACTTAGTATAACTGTGCCTCTTATGATTTAAAGTCTGTGCT  1049

seq1  TTG-TTTTCTTTGCAGTTCTGTAAG-TCTTTTG-TGGACTAGAATGTGG-  1093
      ||| |||||||||||| |||||||| ||||||| |||||||||  |||| 
seq2  TTGTTTTTCTTTGCAG-TCTGTAAGTTCTTTTGTTGGACTAGATGGTGGC  1098

seq1  CAGTTAGATGAACCTCCATGACTA-TTGTCTTTTAGTCTATGTGGGGTAA  1142
      ||| |||||||  || |||||||| |||||  |||||| | || ||||||
seq2  CAGGTAGATGA--CTTCATGACTATTTGTC-CTTAGTC-AAGT-GGGTAA  1143

seq1  CAATGGAAGAGTTTCTCTAAGGGCTGGGAAGCCTTCAGGACTCCTTA-AC  1191
      |||||| |||||| |  ||  | || ||||||||||| ||||||||| ||
seq2  CAATGG-AGAGTTGCCTTA--GACTTGGAAGCCTTCA-GACTCCTTACAC  1189

seq1  CTGT  1195
      ||||
seq2  CTGT  1193


seq1: chr18_50046866_50047361
seq2: B6Ng01-321N04.g_651_946

seq1  TTTATTATTTCATTCA-ATCCTTAAAATTGTGTAATAGCATAGTGTTCTC  49
      |||||||||||||||| ||  ||||||     |||           ||||
seq2  TTTATTATTTCATTCACAT--TTAAAA-----TAA-----------TCTC  32

seq1  ATTATGCACATTTTTGATGTTGTTTTGTTTTTTTGAGACAAGATTTCTTT  99
       || |  | ||  | |               |||   ||   || | || 
seq2  -TTTTAAAAATAATCG---------------TTT---ACGTCATATATTC  63

seq1  GTGTAGCCCTGGTTGTCCTAGAACTTATCTTTGTAGACTAGGCTGGCCTT  149
       |||  ||||  |||          | |||||| |               
seq2  ATGT--CCCTTTTTG----------TGTCTTTGAA---------------  86

seq1  GAACTCAGAGATTTCCTGTTTCTGCCTTCTACGTGTTGGGATTAAAGGCA  199
       || | | | ||                            | |||     
seq2  CAAATAATA-AT----------------------------AATAA-----  102

seq1  TGGACCACCACCACCAGACTCTCTCTCTCTCTCTCTTTTTTAATGATCTG  249
                                           || ||||||  ||
seq2  -------------------------------------TTATAATGA--TG  113

seq1  TTCATTTTTATTTGTCGTTGATGTTTGGCCTGCATGTGTGGGTGAAGATG  299
       | ||| ||| || |  || |  |||||  | | | ||    | ||    
seq2  ATAATTATTA-TTATTATTAA--TTTGGAATTC-TTTGCTTATCAA----  155

seq1  TTAGATACTCTGGAGCTGGTGTTACAGGCAGTTGTGAGCTTCCATGTAAG  349
       | |||  |||                 ||    ||| || ||   | ||
seq2  -TTGATTTTCT-----------------CA----TGACCTACC---TCAG  180

seq1  TGGTGAGATTTGAACATAAGTATTCTAAAAGAGCAGCCAGTGCTCTTAAC  399
      |    | | ||   | |  | ||| ||    || || |    || ||   
seq2  T----ATAGTT---CCT--GGATTTTA----AGGAGGC----CTATT---  210

seq1  CACTGAGCCTTCTCTCTAATCCTTTATGTACATTTTTTTCCATTTTTTAT  449
            | ||| | |    | |||| | |   ||||||||||||||||||
seq2  ------GTCTTGTTT----TTCTTTTTTTTTTTTTTTTTCCATTTTTTAT  250

seq1  TAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCC  496
      |||||||||| |||| ||||||||||||||||||| |||||||||||
seq2  TAGGTATTTAACTCA-TTACATTTCCAATGCTATAACAAAAGTCCCC  296


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