BAC Information

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BAC

Clone NameB6Ng01-323P20
Chromosome18 (Build37)
Map Location 31,863,377 - 31,987,825
singlet/doubletdoublet
Overlap geneSap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46
Downstream geneSft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323P20.bB6Ng01-323P20.g
ACCGA112423GA112424
length1,1441,035
definitionB6Ng01-323P20.b B6Ng01-323P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,986,680 - 31,987,825)(31,863,377 - 31,864,397)
sequence
gaattcaaagccagcctgtgctacctaagatcctatcttaaaaagagaaa
aaaacctcaagtctgacaaacaggcctttaactactgaacttaggtgtaa
aagcagacaaaaccaaatgaatggaacagtagtaacatttaacaggctaa
cataaatacataaggaattcaaaagtagagaagcagagctgaggcccttt
cactccaagtgtcggtggcaggtatttgatcttcaagtgaatacagagca
cctcctgcagaactcagaagtaggacacagcatgttctcagtgcaagcgt
ctcaaaatactgctatattggtagtcactttattctttcacatatactga
gtcattttcagaattaatgaactcaacatgctaatccatcccactaattc
aagaaatacaagtgatacttgttactctttaattagtttatttttttaaa
aagcacttttgccagggctggagagatggctcagtggttaagagcactga
ctgctcttccagaggtcctgagttcaattcccagcaaccacatggtggct
cacaaccatctgtaatgagatctgatgccctcttctggcatgcaggtgtg
cagatagagcactcatataaatcagataaataaatttttaacaaaagcac
tttggccactggaaatacttttactgcacttacctccaaatacttaatta
cagagggattgtagtctatggtttttcggtttacagcttttctcattcgt
tttccatcaaaggtgagctgctgcattgcttgctgctgtgcaaaatcagg
tcgcttataaaataattgtcggggagcctgatgttgaaacctcggcatat
ggaaaaatcgtggaggagagccaatttctgtagccatggtgatgttttcc
tactaagtcactagaatagaagacagaagtatttcagtacacttatcaca
tgacttgacaactatggctagaaaaacattttctaacctgaaaacatctt
cagaactttttcagatgtgtgtgtaagtgtttgcctacagcacattgtga
agcggtcaatcagaaggcaatccgacccctggaactgcagtacagacaga
agtgagcttgccctgtgcatgctggaactaactggattcatctc
gaattcagccttgggcctcttgcatggtggacaagaaccctgtggactga
gtgatgtctccagcccttagactgttgttttcaagcaagtctcactgtgt
aactccagctggtcttaaatccgttcatctgcctcggccttctaagtgct
gccattataggcatgcgcccagccgtagcagtgcttctgagagctttgtc
ataaagaagggtgctagtattgtcccacaggagaatgccactcaagggag
gtcagataacagttctctatttgccagcagactaatgccatatagtaggg
tgtttataaacccccaaaacagaattacatgtgtggggtgggggttccaa
agtttcggtttaatttattaaaactatttcttttatgttgtaaaacagtg
gacctcagaagctgcaggtgcagctgaatgagaaggttgcactctgtagg
gtatgcttaatatgggctgcatatggtaaatgggtgaagcacagggtagg
gtcagctgaaaccagttcacttagggaagagccaaagccctgacttgtta
tgcaaggttgtattgggcccatgggtacataaatttaacaagttgttgtt
ttacagcgtttagtaattggttaagtaaacatggcccagtcattagacct
aggaggacacgagcacccgtgggctctgagtaaggcggtcagctagtgag
ccagggagcgctggcttttctctcagcggtttatagatgtgagccttaca
cagaggtggaaaggctctattgatttttggaaaatatttacattaccttc
agagccaactgttactttggatgcataggtgagcgtgactcattaaagaa
atcagatcacttttttttttcaatcctgttattcctggattccgcagagc
ttagtaaaatagcttcttgtgtcagagtataagtccctggggagatgctg
tgggctagcccttaatagaagcatttgtgctgataattaacatgagtcca
gagggaagggaagggcgttcctgatcttgtctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31986680_31987825
seq2: B6Ng01-323P20.b_47_1190 (reverse)

seq1  GAGATGATCCCAGTTTAGTTTTCAGCATGCACAGGGC-AGCTCACTTCTG  49
      |||||||  |||| |||| || ||||||||||||||| ||||||||||||
seq2  GAGATGAATCCAG-TTAG-TTCCAGCATGCACAGGGCAAGCTCACTTCTG  48

seq1  TCTGTAACTGCAGTTCCAGGGGTCGGA-TGCCCTCTGA-TGGCCGCTTCA  97
      ||||| ||||||||||||||||||||| |||| ||||| || ||||||||
seq2  TCTGT-ACTGCAGTTCCAGGGGTCGGATTGCCTTCTGATTGACCGCTTCA  97

seq1  CAATGTGCTTGTAGGCAAAACCACTTACACACACATCCTGAAAAAG-TCT  146
      |||||||| ||||||||||  ||||||||||||||| ||||||||| |||
seq2  CAATGTGC-TGTAGGCAAA--CACTTACACACACAT-CTGAAAAAGTTCT  143

seq1  GAAGATGTTTTCAGGTTAGAAAATG-TTTTCTAGCCATAGTTGTCAAGTC  195
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAGATGTTTTCAGGTTAGAAAATGTTTTTCTAGCCATAGTTGTCAAGTC  193

seq1  ATGTGATAAGTGTACTGAAATACTTCTGTCTTCTATTCTAGTGACTTAGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATAAGTGTACTGAAATACTTCTGTCTTCTATTCTAGTGACTTAGT  243

seq1  AGGAAAACATCACCATGGCTACAGAAATTGGCTCTCCTCCACGATTTTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACATCACCATGGCTACAGAAATTGGCTCTCCTCCACGATTTTTC  293

seq1  CATATGCCGAGGTTTCAACATCAGGCTCCCCGACAATTATTTTATAAGCG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCGAGGTTTCAACATCAGGCTCCCCGACAATTATTTTATAAGCG  343

seq1  ACCTGATTTTGCACAGCAGCAAGCAATGCAGCAGCTCACCTTTGATGGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTTTGCACAGCAGCAAGCAATGCAGCAGCTCACCTTTGATGGAA  393

seq1  AACGAATGAGAAAAGCTGTAAACCGAAAAACCATAGACTACAATCCCTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAATGAGAAAAGCTGTAAACCGAAAAACCATAGACTACAATCCCTCT  443

seq1  GTAATTAAGTATTTGGAGGTAAGTGCAGTAAAAGTATTTCCAGTGGCCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAGTATTTGGAGGTAAGTGCAGTAAAAGTATTTCCAGTGGCCAA  493

seq1  AGTGCTTTTGTTAAAAATTTATTTATCTGATTTATATGAGTGCTCTATCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTGTTAAAAATTTATTTATCTGATTTATATGAGTGCTCTATCT  543

seq1  GCACACCTGCATGCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTGCATGCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGT  593

seq1  GAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCA  643

seq1  GTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGGCAAAAGTGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGGCAAAAGTGCT  693

seq1  TTTTAAAAAAATAAACTAATTAAAGAGTAACAAGTATCACTTGTATTTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAATAAACTAATTAAAGAGTAACAAGTATCACTTGTATTTCT  743

seq1  TGAATTAGTGGGATGGATTAGCATGTTGAGTTCATTAATTCTGAAAATGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAGTGGGATGGATTAGCATGTTGAGTTCATTAATTCTGAAAATGA  793

seq1  CTCAGTATATGTGAAAGAATAAAGTGACTACCAATATAGCAGTATTTTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATATGTGAAAGAATAAAGTGACTACCAATATAGCAGTATTTTGA  843

seq1  GACGCTTGCACTGAGAACATGCTGTGTCCTACTTCTGAGTTCTGCAGGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTTGCACTGAGAACATGCTGTGTCCTACTTCTGAGTTCTGCAGGAG  893

seq1  GTGCTCTGTATTCACTTGAAGATCAAATACCTGCCACCGACACTTGGAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGTATTCACTTGAAGATCAAATACCTGCCACCGACACTTGGAGT  943

seq1  GAAAGGGCCTCAGCTCTGCTTCTCTACTTTTGAATTCCTTATGTATTTAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCCTCAGCTCTGCTTCTCTACTTTTGAATTCCTTATGTATTTAT  993

seq1  GTTAGCCTGTTAAATGTTACTACTGTTCCATTCATTTGGTTTTGTCTGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCTGTTAAATGTTACTACTGTTCCATTCATTTGGTTTTGTCTGCT  1043

seq1  TTTACACCTAAGTTCAGTAGTTAAAGGCCTGTTTGTCAGACTTGAGGTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACCTAAGTTCAGTAGTTAAAGGCCTGTTTGTCAGACTTGAGGTTT  1093

seq1  TTTTCTCTTTTTAAGATAGGATCTTAGGTAGCACAGGCTGGCTTTGAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTTTAAGATAGGATCTTAGGTAGCACAGGCTGGCTTTGAATT  1143

seq1  C  1146
      |
seq2  C  1144

seq1: chr18_31863377_31864397
seq2: B6Ng01-323P20.g_66_1100

seq1  GAATTCAGCCTTGGGCCTCTTGCATGGTGGACAAGAACCCTGTGGACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTTGGGCCTCTTGCATGGTGGACAAGAACCCTGTGGACTGA  50

seq1  GTGATGTCTCCAGCCCTTAGACTGTTGTTTTCAAGCAAGTCTCACTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTCTCCAGCCCTTAGACTGTTGTTTTCAAGCAAGTCTCACTGTGT  100

seq1  AACTCCAGCTGGTCTTAAATCCGTTCATCTGCCTCGGCCTTCTAAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGCTGGTCTTAAATCCGTTCATCTGCCTCGGCCTTCTAAGTGCT  150

seq1  GCCATTATAGGCATGCGCCCAGCCGTAGCAGTGCTTCTGAGAGCTTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATAGGCATGCGCCCAGCCGTAGCAGTGCTTCTGAGAGCTTTGTC  200

seq1  ATAAAGAAGGGTGCTAGTATTGTCCCACAGGAGAATGCCACTCAAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAGGGTGCTAGTATTGTCCCACAGGAGAATGCCACTCAAGGGAG  250

seq1  GTCAGATAACAGTTCTCTATTTGCCAGCAGACTAATGCCATATAGTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATAACAGTTCTCTATTTGCCAGCAGACTAATGCCATATAGTAGGG  300

seq1  TGTTTATAAACCCCCAAAACAGAATTACATGTGTGGGGTGGGGGTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAAACCCCCAAAACAGAATTACATGTGTGGGGTGGGGGTTCCAA  350

seq1  AGTTTCGGTTTAATTTATTAAAACTATTTCTTTTATGTTGTAAAACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCGGTTTAATTTATTAAAACTATTTCTTTTATGTTGTAAAACAGTG  400

seq1  GACCTCAGAAGCTGCAGGTGCAGCTGAATGAGAAGGTTGCACTCTGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGAAGCTGCAGGTGCAGCTGAATGAGAAGGTTGCACTCTGTAGG  450

seq1  GTATGCTTAATATGGGCTGCATATGGTAAATGGGTGAAGCACAGGGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTAATATGGGCTGCATATGGTAAATGGGTGAAGCACAGGGTAGG  500

seq1  GTCAGCTGAAACCAGTTCACTTAGGGAAGAGCCAAAGCCCTGACTTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGAAACCAGTTCACTTAGGGAAGAGCCAAAGCCCTGACTTGTTA  550

seq1  TGCAAGGTTGTATTGGGCCCATGGGTACATAAATTTAACAAGTTGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTTGTATTGGGCCCATGGGTACATAAATTTAACAAGTTGTTGTT  600

seq1  TTACAGCGTTTAGTAATTGGTTAAGTAAACATGGCCCAGTCATTAGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCGTTTAGTAATTGGTTAAGTAAACATGGCCCAGTCATTAGACCT  650

seq1  AGGAGGACACGAGCACCCGTGGGCTCTGAGTAAGGCGGTCAGCTAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACACGAGCACCCGTGGGCTCTGAGTAAGGCGGTCAGCTAGTGAG  700

seq1  CCAGGGAGCGCTGGCTTTTCTCTCAGCGGTTTATAGATGTGAGCCTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGCGCTGGCTTTTCTCTCAGCGGTTTATAGATGTGAGCCTTACA  750

seq1  CAGAGGTGG-AAGGCTCTATTGATTTTTGGAAAATATTTACATTACCTTC  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGGAAAGGCTCTATTGATTTTTGGAAAATATTTACATTACCTTC  800

seq1  AAGAGCCAACTGTTAC-TTGGATGCATAGGTGAGCGTGACTCATTAAAGA  848
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  -AGAGCCAACTGTTACTTTGGATGCATAGGTGAGCGTGACTCATTAAAGA  849

seq1  AATCAGATCAC--TTTTTTTTCAATCCTGTTATTCCTGGATTCCGCAGAG  896
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AATCAGATCACTTTTTTTTTTCAATCCTGTTATTCCTGGATTCCGCAGAG  899

seq1  C-TAGTAAAAT-GCT--CTGTGTCAGAGTAT-AGT-CCTGGGGAGATGCT  940
      | ||||||||| |||   ||||||||||||| ||| ||||||||||||||
seq2  CTTAGTAAAATAGCTTCTTGTGTCAGAGTATAAGTCCCTGGGGAGATGCT  949

seq1  GT-GGCTAGCCC-TATAAGAAGCATTGTGGCTGAT-ATTACCATGAGTCC  987
      || ||||||||| ||  |||||||||   |||||| |||| |||||||||
seq2  GTGGGCTAGCCCTTAATAGAAGCATTTGTGCTGATAATTAACATGAGTCC  999

seq1  AGAGGGA--GGGAGGGCG-TCCTGATCCTTGTCTCCA  1021
      |||||||  || |||||| ||||||| ||||||||||
seq2  AGAGGGAAGGGAAGGGCGTTCCTGAT-CTTGTCTCCA  1035