BAC Information

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BAC

Clone NameB6Ng01-324M24
Chromosome18 (Build37)
Map Location 87,914,450 - 88,078,049
singlet/doubletdoublet
Overlap geneLOC329008
Upstream geneLOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324M24.bB6Ng01-324M24.g
ACCGA113033GA113034
length1,144993
definitionB6Ng01-324M24.b B6Ng01-324M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,076,895 - 88,078,049)(87,914,450 - 87,915,001)
sequence
gaattctatgaaatcattaattcatctaagcaaaattatctcaagaatat
tcaccttcatgttgacctacaggaatcttactcaacagagtggctatcac
ccaggacgcaatcccactaggctattggcagtgagtgtcttcccatgtct
aatcacagcacattaggtatatgatgaaaatagcaattacaaacatgaaa
aggcacataagtagcaaaaagcaacccgggacaaagcccctgagaacatg
cctcccagggtatacccatcacagcctagcaaagtgataggccatctcca
taaagctcactggcctaccgcagcaattcctgcatgatatctgtcatgag
tcagggaagatttgtgatcttccaaggaagagggaggtggttataggaaa
catgaattttcaattggcatgagatcatattgggatttaaatcatatcta
gaagattaatatagggtcagcatgatatatctagttatatttttgttttg
atctttgaacaaagtattttgtttgttaaaaattgaatgctgtgaataat
ttctggtacagagaatggagagagaatcagtataaaacagatagtaggtc
ccatggaactgagaccttacctttgaagaaaacggaagatacaaaaatga
aagcaaaatgcggaggatgctataatctgctttgttccctggagagatgc
aaaacacatttctaattaccccttatagggattccatgatagatcaaatt
atggaaaccaccaaagactacataggtgaaccaatgagttttacaggggt
tacttaaaggaacagaaaagactgagacagctagccgcattattgccaaa
ggtccactgagaactcgtgacagctcaccatagctgagacctagagcata
ccctggctcaattggttggagagaatccttggcaagtaaatctggtctat
gctgagatagcctgggattaattatatttgatgttaattccgttctcctg
tgagtggcttcaagaaggatgagtagcactcagtgatttccagtaacctg
ctcccacttagtttgtaaaataaaggagagctgatgatggcagataaaag
gaaggtggagcagaaagtggggagaagagaagaaggctaaatgg

gaattcaaacatgagaataagaaagggaagattgataaaaaaaactattc
tgtgtatacacacacacacatttggtggatagagcaaacccaaactagtt
gactccaataatttttttctcttagcctttttctacactctaggacaatg
ttccctatgtaagcaaaagattacttcatagacacaaggtacatattctc
aaaagcaatcaccagaaaacacagattaaaatcattacacaaaaggaaaa
tacaatatgattattgattatgtattcttcttttgaaactcatacctacc
taaatatgtcccaactatcttttttctccacaaattcatcataaccccaa
agcaataattctcttctcattgattaacaaaagttaagcaagcagcaagt
tttccctatgcttagctgataataatttgtattcactaaggaacaggtca
tatgacctgttacctgttatatcttacatcttatttttgaagttgtgttc
agctaaactggctaattatctattctctattcttaaacttgtaacagaat
tatttgctccttattcataaccctgtgtttacatggtatacactgaaccc
tgtgcccgtggatacatccctagattacaagtttcagacactcagaagca
acctagaataaaatgttttctttgatcattcacttgtggcaagcctattt
ttctcttctaagtatattgtgtgcttgtaatacatgaaatcatactgtat
tccttttctaacccacgtagcctttgattactatcctgctttacttatta
tcctaactttattacatgtttctagaaaaacaacttaaaccatcccctta
cactttctatcaactgttctaacctcctaaaactatgtaaatcctgtcag
aagttctgtaaaatcactaatttacctaacaatattacctcagaaagctc
atcttcatgttgatctgaaagaaaattgtccaatgtagtagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88076895_88078049
seq2: B6Ng01-324M24.b_50_1193 (reverse)

seq1  CCATTTTCTCCTTCTTCTC-TCTCCCCACCTTCTGCTCCACCTTCCCTTT  49
      ||| |||  |||||||||| ||||||||| |||||||||||||| |||||
seq2  CCA-TTTAGCCTTCTTCTCTTCTCCCCACTTTCTGCTCCACCTT-CCTTT  48

seq1  TATCTGCCCAATCATCAGCTCTCCTTTATTTTACAAACTAAGGTGGGAAG  99
      ||||||||  ||||||||||||||||||||||||||||||| ||||| ||
seq2  TATCTGCC--ATCATCAGCTCTCCTTTATTTTACAAACTAA-GTGGG-AG  94

seq1  CAGGTTTACTGGAAATCACCTGAGTGCTAACTCATTCCTTCTTTGAAGCC  149
      |||| ||||||||||||| ||||||||| ||||| |||||| ||||||||
seq2  CAGG-TTACTGGAAATCA-CTGAGTGCT-ACTCA-TCCTTC-TTGAAGCC  139

seq1  ACTCACAGGAGAACGGAATTAACATCAAATATAATTAATCCCAGGGCTAT  199
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTCACAGGAGAACGGAATTAACATCAAATATAATTAATCCCA-GGCTAT  188

seq1  CCTCAGCATAGACCAGATTTACTTGCCAAGGATTCTCTCCAACCAATTGA  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTCAGCATAGACCAGATTTACTTGCCAAGGATTCTCTCCAACCAATTGA  237

seq1  GCCAGGGTATGCTCTAGGTCTCAGCTATGGTGAGCTGTCACGAGTTCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGTATGCTCTAGGTCTCAGCTATGGTGAGCTGTCACGAGTTCTCA  287

seq1  GTGGACC-TTGGCAATAATGCGGCTAGCTGTCTCAGTCTTTTCTGTTCCT  348
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCTTTGGCAATAATGCGGCTAGCTGTCTCAGTCTTTTCTGTTCCT  337

seq1  TTAAGTAACCCCTGTAAAACTCATTGGTTCACCTATGTAGTCTTTGGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAACCCCTGTAAAACTCATTGGTTCACCTATGTAGTCTTTGGTGG  387

seq1  TTTCCATAATTTGATCTATCATGGAATCCCTATAAGGGGTAATTAGAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAATTTGATCTATCATGGAATCCCTATAAGGGGTAATTAGAAAT  437

seq1  GTGTTTTGCATCTCTCCAGGGAACAAAGCAGATTATAGCATCCTCCGCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGCATCTCTCCAGGGAACAAAGCAGATTATAGCATCCTCCGCAT  487

seq1  TTTGCTTTCATTTTTGTATCTTCCGTTTTCTTCAAAGGTAAGGTCTCAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCATTTTTGTATCTTCCGTTTTCTTCAAAGGTAAGGTCTCAGT  537

seq1  TCCATGGGACCTACTATCTGTTTTATACTGATTCTCTCTCCATTCTCTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGACCTACTATCTGTTTTATACTGATTCTCTCTCCATTCTCTGT  587

seq1  ACCAGAAATTATTCACAGCATTCAATTTTTAACAAACAAAATACTTTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAATTATTCACAGCATTCAATTTTTAACAAACAAAATACTTTGTT  637

seq1  CAAAGATCAAAACAAAAATATAACTAGATATATCATGCTGACCCTATATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCAAAACAAAAATATAACTAGATATATCATGCTGACCCTATATT  687

seq1  AATCTTCTAGATATGATTTAAATCCCAATATGATCTCATGCCAATTGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTAGATATGATTTAAATCCCAATATGATCTCATGCCAATTGAAA  737

seq1  ATTCATGTTTCCTATAACCACCTCCCTCTTCCTTGGAAGATCACAAATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTTTCCTATAACCACCTCCCTCTTCCTTGGAAGATCACAAATCT  787

seq1  TCCCTGACTCATGACAGATATCATGCAGGAATTGCTGCGGTAGGCCAGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACTCATGACAGATATCATGCAGGAATTGCTGCGGTAGGCCAGTG  837

seq1  AGCTTTATGGAGATGGCCTATCACTTTGCTAGGCTGTGATGGGTATACCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATGGAGATGGCCTATCACTTTGCTAGGCTGTGATGGGTATACCC  887

seq1  TGGGAGGCATGTTCTCAGGGGCTTTGTCCCGGGTTGCTTTTTGCTACTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCATGTTCTCAGGGGCTTTGTCCCGGGTTGCTTTTTGCTACTTA  937

seq1  TGTGCCTTTTCATGTTTGTAATTGCTATTTTCATCATATACCTAATGTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTTTCATGTTTGTAATTGCTATTTTCATCATATACCTAATGTGC  987

seq1  TGTGATTAGACATGGGAAGACACTCACTGCCAATAGCCTAGTGGGATTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTAGACATGGGAAGACACTCACTGCCAATAGCCTAGTGGGATTGC  1037

seq1  GTCCTGGGTGATAGCCACTCTGTTGAGTAAGATTCCTGTAGGTCAACATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGTGATAGCCACTCTGTTGAGTAAGATTCCTGTAGGTCAACATG  1087

seq1  AAGGTGAATATTCTTGAGATAATTTTGCTTAGATGAATTAATGATTTCAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAATATTCTTGAGATAATTTTGCTTAGATGAATTAATGATTTCAT  1137

seq1  AGAATTC  1155
      |||||||
seq2  AGAATTC  1144


seq1: chr18_87914450_87915001
seq2: B6Ng01-324M24.g_63_614

seq1  GAATTCAAACATGAGAATAAGAAAGGGAAGATTGATAAAAAAAACTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATGAGAATAAGAAAGGGAAGATTGATAAAAAAAACTATTC  50

seq1  TGTGTATACACACACACACATTTGGTGGATAGAGCAAACCCAAACTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATACACACACACACATTTGGTGGATAGAGCAAACCCAAACTAGTT  100

seq1  GACTCCAATAATTTTTTTCTCTTAGCCTTTTTCTACACTCTAGGACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAATAATTTTTTTCTCTTAGCCTTTTTCTACACTCTAGGACAATG  150

seq1  TTCCCTATGTAAGCAAAAGATTACTTCATAGACACAAGGTACATATTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATGTAAGCAAAAGATTACTTCATAGACACAAGGTACATATTCTC  200

seq1  AAAAGCAATCACCAGAAAACACAGATTAAAATCATTACACAAAAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATCACCAGAAAACACAGATTAAAATCATTACACAAAAGGAAAA  250

seq1  TACAATATGATTATTGATTATGTATTCTTCTTTTGAAACTCATACCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATGATTATTGATTATGTATTCTTCTTTTGAAACTCATACCTACC  300

seq1  TAAATATGTCCCAACTATCTTTTTTCTCCACAAATTCATCATAACCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTCCCAACTATCTTTTTTCTCCACAAATTCATCATAACCCCAA  350

seq1  AGCAATAATTCTCTTCTCATTGATTAACAAAAGTTAAGCAAGCAGCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAATTCTCTTCTCATTGATTAACAAAAGTTAAGCAAGCAGCAAGT  400

seq1  TTTCCCTATGCTTAGCTGATAATAATTTGTATTCACTAAGGAACAGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTATGCTTAGCTGATAATAATTTGTATTCACTAAGGAACAGGTCA  450

seq1  TATGACCTGTTACCTGTTATATCTTACATCTTATTTTTGAAGTTGTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTGTTACCTGTTATATCTTACATCTTATTTTTGAAGTTGTGTTC  500

seq1  AGCTAAACTGGCTAATTATCTATTCTCTATTCTTAAACTTGTAACAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACTGGCTAATTATCTATTCTCTATTCTTAAACTTGTAACAGAAT  550

seq1  TA  552
      ||
seq2  TA  552


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