BAC Information

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BAC

Clone NameB6Ng01-327P10
Chromosome18 (Build37)
Map Location 54,051,267 - 54,052,424
singlet/doubletsinglet
Overlap geneCsnk1g3
Upstream geneSncaip, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
Downstream geneEG433184, LOC667360, EG545257, LOC100042489, Zfp608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327P10.bB6Ng01-327P10.g
ACCGA115353GA115354
length7611,149
definitionB6Ng01-327P10.b B6Ng01-327P10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatttcctcagtagttacaggactgctgaaatcatttgtttcac
attgggagcgtcgtggctgccaaagacgtacttcatgtgtcatcaatttt
gtccaatttgcaccaagctctttctaagattctctttgccatctttttac
gtgtctgtagaggtggtcgtgacatctacctagtttttcattatgatcat
ttgtgtcaactcattatcatttctttatcagtgtggttgatgttatgtgt
cagcgtggctgaccccatggctgacccatactatccccagaatttggtaa
aatgttattctggatgtttctgggtgaatattttgaggtgggggtagaat
ttaaattggtggacttttgaggagatcagactgcaatgggaaatagataa
atgcatcaaccaaataaaggtcaaagggaattagagatgacttcctgaag
cctggggcattctgcagaggggtactccgcactcctgaactacagcgacc
aacgcttttgcccgcctactcagcagatttacagtggctgttttctgtga
tcatgtaaggctatcctttgatatcagttattttctttcccattcttaaa
atacactgcagtggctctgtttctctgcaatccctcactaaagcattagc
cttgctgaaagtgtctctattctctccttcttttttttttatttttattt
cttccccttcctatttttttttctcaccattaattttctgtttcgcatca
tttgttggtct

gaattctatattacaagtttatgaatagtttcttgaatgttctgaactga
atgaggtaaaataggacgtgccttagtttcttagtgatcgttgttgtcat
atgcacttgacttgtctcccttgcctgccatgaatgatctgctagtcagt
ttccattgcttcctttttatctatcacaaagtccagtgttaagaatggac
tcattttcagctgttaaaaaagcctgctcattttctaggctctattttca
gctaagtcactgcttcctacttgactactgattcccagtttcaggcatgg
gccttgttctgggtcctccatcctgctccatcttcattctaggcttcttc
tgggatggaaggcagggagaccctcttaaactgaccgatacactttgact
ttctgtttctgatgtggaaatgtgtgctcttggaagacttcctatgtacc
tgttacacagacagaccagtctccaggtatttctgtacacaaatatgcat
ccacaggctttaccaaaaagaagcacactcaggaaccagagtggttgtcg
cctctgggaagggcagatgctgaggagtgagaagtgtatgaacagctgtg
gaacattcttacctcatttgtggatccttacatttagaatatggttttgg
ttagtccacaaatttcaagtaagtgaaaagctacatattgaaaatacaaa
aatttaccaaaagaaaatagaaaaaagcagaggaggaagtttttaaatgt
ttaaaaatattgctatgttcattaattatttaaaacagctgcactttaaa
gtaagctttttgcaaaaatatggaggatatgtaatactttgagatatact
aaattattacgagggtgatcattgtttttaatgttttttattttaaagat
tttatttatgtatatgagtatactacactgtagctgtacagatgggtgtg
agccaccatatgtttctgagattgactcagacctttgaagacagtcagtg
ctctaccactgagcgtctctcagccctatgttttttttaaaatatatata
tctaatgtaccacaccatggtgcgttggtgcaatgtgtacaggttcagag
gatagttggtgggaccttggaccaatgccttatcctctcaggcctagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54051267_54052424
seq2: B6Ng01-327P10.g_66_1214

seq1  GAATTCTATATTACAAGTTTATGAATAGTTTCTTGAATGTTCTGAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTACAAGTTTATGAATAGTTTCTTGAATGTTCTGAACTGA  50

seq1  ATGAGGTAAAATAGGACGTGCCTTAGTTTCTTAGTGATCGTTGTTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAAAATAGGACGTGCCTTAGTTTCTTAGTGATCGTTGTTGTCAT  100

seq1  ATGCACTTGACTTGTCTCCCTTGCCTGCCATGAATGATCTGCTAGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTGACTTGTCTCCCTTGCCTGCCATGAATGATCTGCTAGTCAGT  150

seq1  TTCCATTGCTTCCTTTTTATCTATCACAAAGTCCAGTGTTAAGAATGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGCTTCCTTTTTATCTATCACAAAGTCCAGTGTTAAGAATGGAC  200

seq1  TCATTTTCAGCTGTTAAAAAAGCCTGCTCATTTTCTAGGCTCTATTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAGCTGTTAAAAAAGCCTGCTCATTTTCTAGGCTCTATTTTCA  250

seq1  GCTAAGTCACTGCTTCCTACTTGACTACTGATTCCCAGTTTCAGGCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCACTGCTTCCTACTTGACTACTGATTCCCAGTTTCAGGCATGG  300

seq1  GCCTTGTTCTGGGTCCTCCATCCTGCTCCATCTTCATTCTAGGCTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTCTGGGTCCTCCATCCTGCTCCATCTTCATTCTAGGCTTCTTC  350

seq1  TGGGATGGAAGGCAGGGAGACCCTCTTAAACTGACCGATACACTTTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGAAGGCAGGGAGACCCTCTTAAACTGACCGATACACTTTGACT  400

seq1  TTCTGTTTCTGATGTGGAAATGTGTGCTCTTGGAAGACTTCCTATGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCTGATGTGGAAATGTGTGCTCTTGGAAGACTTCCTATGTACC  450

seq1  TGTTACACAGACAGACCAGTCTCCAGGTATTTCTGTACACAAATATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACAGACAGACCAGTCTCCAGGTATTTCTGTACACAAATATGCAT  500

seq1  CCACAGGCTTTACCAAAAAGAAGCACACTCAGGAACCAGAGTGGTTGTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCTTTACCAAAAAGAAGCACACTCAGGAACCAGAGTGGTTGTCG  550

seq1  CCTCTGGGAAGGGCAGATGCTGAGGAGTGAGAAGTGTATGAACAGCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGAAGGGCAGATGCTGAGGAGTGAGAAGTGTATGAACAGCTGTG  600

seq1  GAACATTCTTACCTCATTTGTGGATCCTTACATTTAGAATATGGTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCTTACCTCATTTGTGGATCCTTACATTTAGAATATGGTTTTGG  650

seq1  TTAGTCCACAAATTTCAAGTAAGTGAAAAGCTACATATTGAAAATACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCACAAATTTCAAGTAAGTGAAAAGCTACATATTGAAAATACAAA  700

seq1  AATTTACCAAAAGAAAATAGAAAAAAGCAGAGGAGGAAGTTTTTAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCAAAAGAAAATAGAAAAAAGCAGAGGAGGAAGTTTTTAAATGT  750

seq1  TTAAAAATATTGCTATGTTCATTAATTATTTAAAACAGCTGCACTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATTGCTATGTTCATTAATTATTTAAAACAGCTGCACTTTAAA  800

seq1  GTAAGCTTTTTGCAAAAATATGGAGGATATGTAATACTTTGAGATATACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTTTTGCAAAAATATGGAGGATATGTAATACTTTGAGATATACT  850

seq1  AAATTATTACGAGGGTGATCATTGTTTTTAATGTTTTTTATTTTAAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTACGAGGGTGATCATTGTTTTTAATGTTTTTTATTTTAAAGAT  900

seq1  TTTATTTATGTATATGAGTATACTACACTGTAGCTGTACAGATGGTTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTATTTATGTATATGAGTATACTACACTGTAGCTGTACAGATGGGTGTG  950

seq1  AGCCACCATATTGTTTCTGAGATTTGAACTCAGGACCTTTGAAGAACAGT  1000
      |||||||||| |||||||||||||   ||||| ||||||||||| |||||
seq2  AGCCACCATA-TGTTTCTGAGATT--GACTCA-GACCTTTGAAG-ACAGT  995

seq1  CAGTGCTCTTAACCACTGAGCCGTCTCTCCAGCCCTTAATGTTTTTTTAA  1050
      |||||||||  ||||||||| ||||||| |||||||  |||||||||| |
seq2  CAGTGCTCT--ACCACTGAG-CGTCTCT-CAGCCCT--ATGTTTTTTTTA  1039

seq1  AAATTATATATATTCTTATGTA-CACA-CAT-GTGCGTTTGTGC-ATGTG  1096
      ||| |||||||| ||| ||||| |||| ||| ||||||| |||| |||||
seq2  AAA-TATATATA-TCTAATGTACCACACCATGGTGCGTTGGTGCAATGTG  1087

seq1  TAGAGG-TCAGAGGATAGTTTGTGGGAGCTTGGAGCACAGTGCCTTTATC  1145
      || ||| ||||||||||||| |||||| ||||||   || |||| |||||
seq2  TACAGGTTCAGAGGATAGTTGGTGGGACCTTGGA--CCAATGCC-TTATC  1134

seq1  CTCTCAG--CTAGCC  1158
      |||||||  ||||||
seq2  CTCTCAGGCCTAGCC  1149


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