BAC Information

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BAC

Clone NameB6Ng01-328I06
Chromosome18 (Build37)
Map Location 45,307,154 - 45,486,313
singlet/doubletdoublet
Overlap geneLOC100042900
Upstream geneLOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328I06.bB6Ng01-328I06.g
ACCGA115759GA115760
length907613
definitionB6Ng01-328I06.b B6Ng01-328I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,485,407 - 45,486,313)(45,307,154 - 45,307,767)
sequence
gaattctttgagacgtccaggcactattgacagaaatctccaggacacac
gagtgatgtattggctgctgtaatttaatgtgatcactattgactcagaa
gacaagacagagtatatgacagggcaaatcctttagccttcctggctcct
agcatgccgtgtcgatttttttttattagaacaggtttgttttctctcct
gagaacactgtcctctgaccaaacccttacattctgcagtgggcctttct
cctcttcgtggctttcctctttttgttgtaatagactgtgttttgactaa
gatctgagatctgaatgtcacaaatgacattcttaaggaattgtcccatt
tccccttttctgagacagatgcctttgagtggactcacagatgttgtttg
tattactgcagtgcagaggcatatacatatacacatacccgtaactatat
atgtataacattgtatcattctgcacttatgttgctgtttattaaatatc
tgattatttactactgttattatttatcctgggttagtgaagtccatttc
tgtaccttttaacatatcaataccattataaaatatttcttaattttaat
ataataaattaatttaatgttaactaattcatctattatttaacccagaa
tttgatatttacactagccctgatatctccctataaagaacctaggtctg
atatttagttctccattgtcgtttgggtctcattacttctagatccttta
cattccttggacaaagaacatacatatatctgtagttatgaatccacaca
cacacacacacacacacacacacacacacacatatatatacatatatata
tatatatatatatatatatatatatatgtatatatatatatatatatata
tatatat

gaattcatcctgcaattctgttttccttcaacaatatttggttttactct
tctctaaaacattctcctaaacacacctagaataatgttccatcactcat
ccatgcacctttcaatgcagccaaaatagatacttaaaatttatcatcat
gaaattggtgaaaccttggtttgacattctctctctctctctctctctct
ctctctctctctctctctctctccctctttccctccctctccttctctct
ctctttcttttgcctacacagctatttttcttttcaaatcttcattctgt
ctttcaaacacatctatcttttaatgcagattcaagttttataggccata
aaacccaaagcaaagatgaccaaaaacttatttcctttccccctttctta
ggaaggacagtcttcagtcactcctaaaatatgtgatggataagttattt
gcatttacatcctatttcgtgagctctgtgcttctgataaaaaggaagtg
taaagtcactaaaagattcataaatattaatgtgaaataataggctgttt
agaatatattttaaatgccaagaaataccattcaaaggtctgatctattc
tctttgtttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45485407_45486313
seq2: B6Ng01-328I06.b_50_956 (reverse)

seq1  ATATATGTATATATATATATATATATATACATATATATATATATATATAT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATACATATATATATATATATATAT  50

seq1  ATATATATATATATATGTATATATATGTGTGTGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATGTATATATATGTGTGTGTGTGTGTGTGTGTGTGT  100

seq1  GTGTGTGTGTGTGGATTCATAACTACAGATATATGTATGTTCTTTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGGATTCATAACTACAGATATATGTATGTTCTTTGTCCA  150

seq1  AGGAATGTAAAGGATCTAGAAGTAATGAGACCCAAACGACAATGGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTAAAGGATCTAGAAGTAATGAGACCCAAACGACAATGGAGAAC  200

seq1  TAAATATCAGACCTAGGTTCTTTATAGGGAGATATCAGGGCTAGTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCAGACCTAGGTTCTTTATAGGGAGATATCAGGGCTAGTGTAAA  250

seq1  TATCAAATTCTGGGTTAAATAATAGATGAATTAGTTAACATTAAATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATTCTGGGTTAAATAATAGATGAATTAGTTAACATTAAATTAAT  300

seq1  TTATTATATTAAAATTAAGAAATATTTTATAATGGTATTGATATGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATATTAAAATTAAGAAATATTTTATAATGGTATTGATATGTTAAA  350

seq1  AGGTACAGAAATGGACTTCACTAACCCAGGATAAATAATAACAGTAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAGAAATGGACTTCACTAACCCAGGATAAATAATAACAGTAGTAA  400

seq1  ATAATCAGATATTTAATAAACAGCAACATAAGTGCAGAATGATACAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGATATTTAATAAACAGCAACATAAGTGCAGAATGATACAATGT  450

seq1  TATACATATATAGTTACGGGTATGTGTATATGTATATGCCTCTGCACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATATAGTTACGGGTATGTGTATATGTATATGCCTCTGCACTGC  500

seq1  AGTAATACAAACAACATCTGTGAGTCCACTCAAAGGCATCTGTCTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACAAACAACATCTGTGAGTCCACTCAAAGGCATCTGTCTCAGAA  550

seq1  AAGGGGAAATGGGACAATTCCTTAAGAATGTCATTTGTGACATTCAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAATGGGACAATTCCTTAAGAATGTCATTTGTGACATTCAGATC  600

seq1  TCAGATCTTAGTCAAAACACAGTCTATTACAACAAAAAGAGGAAAGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTTAGTCAAAACACAGTCTATTACAACAAAAAGAGGAAAGCCAC  650

seq1  GAAGAGGAGAAAGGCCCACTGCAGAATGTAAGGGTTTGGTCAGAGGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAGAAAGGCCCACTGCAGAATGTAAGGGTTTGGTCAGAGGACAG  700

seq1  TGTTCTCAGGAGAGAAAACAAACCTGTTCTAATAAAAAAAAATCGACACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCAGGAGAGAAAACAAACCTGTTCTAATAAAAAAAAATCGACACG  750

seq1  GCATGCTAGGAGCCAGGAAGGCTAAAGGATTTGCCCTGTCATATACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAGGAGCCAGGAAGGCTAAAGGATTTGCCCTGTCATATACTCTG  800

seq1  TCTTGTCTTCTGAGTCAATAGTGATCACATTAAATTACAGCAGCCAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTTCTGAGTCAATAGTGATCACATTAAATTACAGCAGCCAATAC  850

seq1  ATCACTCGTGTGTCCTGGAGATTTCTGTCAATAGTGCCTGGACGTCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCGTGTGTCCTGGAGATTTCTGTCAATAGTGCCTGGACGTCTCAA  900

seq1  AGAATTC  907
      |||||||
seq2  AGAATTC  907


seq1: chr18_45307154_45307767
seq2: B6Ng01-328I06.g_70_682

seq1  GAATTCATCCTGCAATTCTGTTTTCCTTCAACAATATTTGGTTTTACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTGCAATTCTGTTTTCCTTCAACAATATTTGGTTTTACTCT  50

seq1  TCTCTAAAACATTCTCCTAAACACACCTAGAATAATGTTCCATCACTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAACATTCTCCTAAACACACCTAGAATAATGTTCCATCACTCAT  100

seq1  CCATGCACCTTTCAATGCAGCCAAAATAGATACTTAAAATTTATCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACCTTTCAATGCAGCCAAAATAGATACTTAAAATTTATCATCAT  150

seq1  GAAATTGGTGAAACCTTGGTTTGACATTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGTGAAACCTTGGTTTGACATTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTCTCTCTCTCTCTCCCTCTTTCCCTCCCTCTCCTTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCCCTCTTTCCCTCCCTCTCCTTCTCTCT  250

seq1  CTCTTTCTTTTGCCTACACAGCTATTTTTCTTTTCAAATCTTCATTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTTGCCTACACAGCTATTTTTCTTTTCAAATCTTCATTCTGT  300

seq1  CTTTCAAACACATCTATCTTTTAATGCAGATTCAAGTTTTATAGGCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAACACATCTATCTTTTAATGCAGATTCAAGTTTTATAGGCCATA  350

seq1  AAACCCAAAGCAAAGATGACCAAAAACTTATTTCCTTTCCCCCTTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAGCAAAGATGACCAAAAACTTATTTCCTTTCCCCCTTTCTTA  400

seq1  GGAAGGACAGTCTTCAGTCACTCCTAAAATATGTGATGGATAAGTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACAGTCTTCAGTCACTCCTAAAATATGTGATGGATAAGTTATTT  450

seq1  GCATTTACATCCTATTTCTGTGAGCTCAGTGCTTCTGATAAAGAGGAAGT  500
      |||||||||||||||||| |||||||| |||||||||||||| |||||||
seq2  GCATTTACATCCTATTTC-GTGAGCTCTGTGCTTCTGATAAAAAGGAAGT  499

seq1  GTAAAGTCACTAAAAGAATCATAAATATTAATGTGAAATAATAGGCTGTT  550
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAAAGTCACTAAAAGATTCATAAATATTAATGTGAAATAATAGGCTGTT  549

seq1  TAGAATATATTTTAAATGCCAAGAAATACCATTCAAAGGTCTGATCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATATTTTAAATGCCAAGAAATACCATTCAAAGGTCTGATCTATT  599

seq1  CTCTTTGTTTCTGA  614
      ||||||||||||||
seq2  CTCTTTGTTTCTGA  613


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