BAC Information

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BAC

Clone NameB6Ng01-329L02
Chromosome18 (Build37)
Map Location 89,622,117 - 89,808,648
singlet/doubletdoublet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329L02.bB6Ng01-329L02.g
ACCGA116583GA116584
length1,1701,169
definitionB6Ng01-329L02.b B6Ng01-329L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,807,500 - 89,808,648)(89,622,117 - 89,623,281)
sequence
gaattcaaagtaaaataactgaaataataggaaacaaccactgtcattat
ttatctacaaatgctcaaagattcaagtattttccaggaaatttagtgga
taaaatgactgagcataacacaaacatatgataatattcattgatataat
aagatctcagaggtcttcattacaattacaaaataaataactttttatat
aaaattaggactatcaaaatgggcatgattgcttcacaaattgtttatgg
taaaaatgataaacattttatctgtgatatttaagtcatttacttaatta
taaacaaagtgcaaggcaaataacatggaatttcagatattagagtgtga
agaaaatacaatttactaaatatatcttgttaaacctaaatagtaaagtg
aatgctttgttcttaagcatggcttttactaaatatctctgtcctgtata
agataaaatcttttcatatacctgtttatcaattatgtaactaatctata
tgaaatactgattgatttagtaattttgttttcattggccaaattaatct
gggtcaaattttccattatgtctatatttataagttgaaaatcctacaat
tataaaaaatgtcctcattttattaaaacaatcaaaggattatataaatt
gagatataaactttgtagttcattattgacacatttacaatatatcttgt
tactttttgtttttgagaaattttaaatagttaacttcctcattttataa
gaatgatgaataagttgggttgggtcctgagtcaagcacggaaggtacat
ggttgttaccctaatgtacgcaggtgtctgatataggcatggaatatgca
tggctgttatcttaatgtatacaggggtcaaagacaggcatggaaaggtg
gatagttgctacccttatgtacacaggagtcagaggcatggaatgcatgg
aaagcacatgggttgttatcctaacgtatacagggattagagacagtcat
gggaaggcacaaacccaacgacttccaatgcacaaggagtcagaagatag
taaatagttataaggttatgttctgggcttcttgttaaaaagttctaggg
tccagctaagctacataagggagagacctggtccacaaagaaaaattcaa
aattcaaaacaatatataat

gaattcagaaattattcttaacaaaaggaataaaattctaaacaaccttc
tggggcaaaaataaacctatcagaaaaaaaagccaattcctggctatagt
taaccataggaaagcagtttttccctttctgcagagttgccatccattct
ggacaagtggagacagtctgataatactctgaatgaggcacttaggatcc
taaaggtgagaaagggacattttaaggcagaacagagtaaaagtaacagg
atagccatgatgctgaacaagcagaatttacatccatacaggaagacaca
gctcttccagtaaaagtcctcatcaaacccacaatgtcaaagaattacga
acacttagaatgtcattgcaacacatttagtttgttgtttataatttaca
gtgttagtagaattttaaattatcccacagttctcattttatgctgtcct
cacctaaactgttatagttagctgttctatagccagctttacagaatgca
gtgtgctaaggggtattttatagtataagaattagaaaagaatgttcttt
cataaggtgcagaggtaacatgtcaggatttactgttttagcctgcctgt
tacacttggagaaactagaaatgtacccatttgagtataatcagtactca
gtttgagatggtggtgctaagacatttctttatctcttgattaccctttc
tatttataagtaacttactaattccagaaggattactggtgatttgtttt
ctagatttgttttgaattgaccaattcctaccacttctcttaatggtaat
ataataagtgcagacagagtagcctccaacatcatcaagtgggttcagag
tggtaagagtaaagcaaattgaaaggtcaatggggactttccatgccaat
aagaccaatttagaacctgatttgacttaatttaagtataataacattgc
agagtaatggagcatgagttgctgaaatgtaattttagacagtccttatt
ttacgtccgtaagttggaagaactcatttatccaaatatcactactaatg
tgtgttctcaatcccttcaagaactggtgtattacagtgcacctgattga
caattgtattaatacagaaaacatggtaagggccgaattataatctcctc
aagctcgaaaaaaacaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89807500_89808648
seq2: B6Ng01-329L02.b_46_1215 (reverse)

seq1  ATTAT-TATTGTTTTG-ATTTTG-ATTTTTCTTTGTGGACAAGGTCT---  44
      ||||| |||||||||| |||||| |||||||||||||||| ||||||   
seq2  ATTATATATTGTTTTGAATTTTGAATTTTTCTTTGTGGACCAGGTCTCTC  50

seq1  CCCTATGTAGCCTTAGCTG--ACCTAGAACTTTT--AC-AGAAG-CCAG-  87
      || ||||||| ||||||||   ||||||||||||  || ||||| |||| 
seq2  CCTTATGTAG-CTTAGCTGGACCCTAGAACTTTTTAACAAGAAGCCCAGA  99

seq1  ACATA--CCTAT-ACTATTTACTATC-TCTGACTCCTTTGTGCATTGG-A  132
      |||||  | ||| ||||||||||||| ||||||||| ||||||||||| |
seq2  ACATAACCTTATAACTATTTACTATCTTCTGACTCC-TTGTGCATTGGAA  148

seq1  GTCGTT-GGTTTGTGCCTT-CCATGACTGTCTCTAAT-CCTGTATACGTT  179
      |||||| |||||||||||| ||||||||||||||||| ||||||||||||
seq2  GTCGTTGGGTTTGTGCCTTCCCATGACTGTCTCTAATCCCTGTATACGTT  198

seq1  AGGATAACAA-CCATGTGCTTTCCATGCATTCCATGCCTCTGACTCCTGT  228
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGATAACAACCCATGTGCTTTCCATGCATTCCATGCCTCTGACTCCTGT  248

seq1  GTACATAAGGGTAGCAACTATCCACC-TTCCATGCCTGTCTTTGACCCCT  277
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTACATAAGGGTAGCAACTATCCACCTTTCCATGCCTGTCTTTGACCCCT  298

seq1  GTATACATTAAGATAACAGCCATGCATATTCCATGCCTATATCAGACACC  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATTAAGATAACAGCCATGCATATTCCATGCCTATATCAGACACC  348

seq1  TGCGTACATTAGGGTAACAACCATGTACCTTCCGTGCTTGACTCAGGACC  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTACATTAGGGTAACAACCATGTACCTTCCGTGCTTGACTCAGGACC  398

seq1  CAACCCAACTTATTCATCATTCTTATAAAATGAGGAAGTTAACTATTTAA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAACTTATTCATCATTCTTATAAAATGAGGAAGTTAACTATTTAA  448

seq1  AATTTCTCAAAAACAAAAAGTAACAAGATATATTGTAAATGTGTCAATAA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCAAAAACAAAAAGTAACAAGATATATTGTAAATGTGTCAATAA  498

seq1  TGAACTACAAAGTTTATATCTCAATTTATATAATCCTTTGATTGTTTTAA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACAAAGTTTATATCTCAATTTATATAATCCTTTGATTGTTTTAA  548

seq1  TAAAATGAGGACATTTTTTATAATTGTAGGATTTTCAACTTATAAATATA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGGACATTTTTTATAATTGTAGGATTTTCAACTTATAAATATA  598

seq1  GACATAATGGAAAATTTGACCCAGATTAATTTGGCCAATGAAAACAAAAT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATGGAAAATTTGACCCAGATTAATTTGGCCAATGAAAACAAAAT  648

seq1  TACTAAATCAATCAGTATTTCATATAGATTAGTTACATAATTGATAAACA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATCAATCAGTATTTCATATAGATTAGTTACATAATTGATAAACA  698

seq1  GGTATATGAAAAGATTTTATCTTATACAGGACAGAGATATTTAGTAAAAG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATGAAAAGATTTTATCTTATACAGGACAGAGATATTTAGTAAAAG  748

seq1  CCATGCTTAAGAACAAAGCATTCACTTTACTATTTAGGTTTAACAAGATA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTAAGAACAAAGCATTCACTTTACTATTTAGGTTTAACAAGATA  798

seq1  TATTTAGTAAATTGTATTTTCTTCACACTCTAATATCTGAAATTCCATGT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTAAATTGTATTTTCTTCACACTCTAATATCTGAAATTCCATGT  848

seq1  TATTTGCCTTGCACTTTGTTTATAATTAAGTAAATGACTTAAATATCACA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCTTGCACTTTGTTTATAATTAAGTAAATGACTTAAATATCACA  898

seq1  GATAAAATGTTTATCATTTTTACCATAAACAATTTGTGAAGCAATCATGC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATGTTTATCATTTTTACCATAAACAATTTGTGAAGCAATCATGC  948

seq1  CCATTTTGATAGTCCTAATTTTATATAAAAAGTTATTTATTTTGTAATTG  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGATAGTCCTAATTTTATATAAAAAGTTATTTATTTTGTAATTG  998

seq1  TAATGAAGACCTCTGAGATCTTATTATATCAATGAATATTATCATATGTT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGACCTCTGAGATCTTATTATATCAATGAATATTATCATATGTT  1048

seq1  TGTGTTATGCTCAGTCATTTTATCCACTAAATTTCCTGGAAAATACTTGA  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATGCTCAGTCATTTTATCCACTAAATTTCCTGGAAAATACTTGA  1098

seq1  ATCTTTGAGCATTTGTAGATAAATAATGACAGTGGTTGTTTCCTATTATT  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGAGCATTTGTAGATAAATAATGACAGTGGTTGTTTCCTATTATT  1148

seq1  TCAGTTATTTTACTTTGAATTC  1149
      ||||||||||||||||||||||
seq2  TCAGTTATTTTACTTTGAATTC  1170


seq1: chr18_89622117_89623281
seq2: B6Ng01-329L02.g_66_1234

seq1  GAATTCAGAAATTATTCTTAACAAAAGGAATAAAATTCTAAACAACCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATTATTCTTAACAAAAGGAATAAAATTCTAAACAACCTTC  50

seq1  TGGGGCAAAAATAAACCTATCAGAAAAAAAAGCCAATTCCTGGCTATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAAAATAAACCTATCAGAAAAAAAAGCCAATTCCTGGCTATAGT  100

seq1  TAACCATAGGAAAGCAGTTTTTCCCTTTCTGCAGAGTTGCCATCCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATAGGAAAGCAGTTTTTCCCTTTCTGCAGAGTTGCCATCCATTCT  150

seq1  GGACAAGTGGAGACAGTCTGATAATACTCTGAATGAGGCACTTAGGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTGGAGACAGTCTGATAATACTCTGAATGAGGCACTTAGGATCC  200

seq1  TAAAGGTGAGAAAGGGACATTTTAAGGCAGAACAGAGTAAAAGTAACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGAGAAAGGGACATTTTAAGGCAGAACAGAGTAAAAGTAACAGG  250

seq1  ATAGCCATGATGCTGAACAAGCAGAATTTACATCCATACAGGAAGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATGATGCTGAACAAGCAGAATTTACATCCATACAGGAAGACACA  300

seq1  GCTCTTCCAGTAAAAGTCCTCATCAAACCCACAATGTCAAAGAATTACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCAGTAAAAGTCCTCATCAAACCCACAATGTCAAAGAATTACGA  350

seq1  ACACTTAGAATGTCATTGCAACACATTTAGTTTGTTGTTTATAATTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGAATGTCATTGCAACACATTTAGTTTGTTGTTTATAATTTACA  400

seq1  GTGTTAGTAGAATTTTAAATTATCCCACAGTTCTCATTTTATGCTGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTAGAATTTTAAATTATCCCACAGTTCTCATTTTATGCTGTCCT  450

seq1  CACCTAAACTGTTATAGTTAGCTGTTCTATAGCCAGCTTTACAGAATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAACTGTTATAGTTAGCTGTTCTATAGCCAGCTTTACAGAATGCA  500

seq1  GTGTGCTAAGGGGTATTTTATAGTATAAGAATTAGAAAAGAATGTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTAAGGGGTATTTTATAGTATAAGAATTAGAAAAGAATGTTCTTT  550

seq1  CATAAGGTGCAGAGGTAACATGTCAGGATTTACTGTTTTAGCCTGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTGCAGAGGTAACATGTCAGGATTTACTGTTTTAGCCTGCCTGT  600

seq1  TACACTTGGAGAAACTAGAAATGTACCCATTTGAGTATAATCAGTACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGGAGAAACTAGAAATGTACCCATTTGAGTATAATCAGTACTCA  650

seq1  GTTTGAGATGGTGGTGCTAAGACATTTCTTTATCTCTTGATTACCCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGATGGTGGTGCTAAGACATTTCTTTATCTCTTGATTACCCTTTC  700

seq1  TATTTATAAGTAACTTACTAATTCCAGAAGGATTACTGGTGATTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAAGTAACTTACTAATTCCAGAAGGATTACTGGTGATTTGTTTT  750

seq1  CTAGATTTGTTTTGAATTGACCAATTCCTACCACTTCTCTTAATGGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTGTTTTGAATTGACCAATTCCTACCACTTCTCTTAATGGTAAT  800

seq1  ATAATAAGTGCAGACAGAGTAGCCTCCAACATCATCAAGTGGGTTCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGTGCAGACAGAGTAGCCTCCAACATCATCAAGTGGGTTCAGAG  850

seq1  TGGTAAGAGTAAAGCAAATTG-AAGGTCAATGGGGACTTTCCATGCCAAT  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGTAAGAGTAAAGCAAATTGAAAGGTCAATGGGGACTTTCCATGCCAAT  900

seq1  AAGACCAATTTAGAACCTGATTTGACTTAATTTAAGTATAATAACATTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAATTTAGAACCTGATTTGACTTAATTTAAGTATAATAACATTGC  950

seq1  AGAGTAATGGAGCATGAGTTGCTGAAATGTAATTTTAGACAGTCCTTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATGGAGCATGAGTTGCTGAAATGTAATTTTAGACAGTCCTTATT  1000

seq1  TTAAGGTCCGTAAGGTTGGAAGAACTCATTTATCCAAAATATCACTACTA  1049
      || | |||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TT-ACGTCCGTAA-GTTGGAAGAACTCATTTATCC-AAATATCACTACTA  1047

seq1  ATTGTGTGTTTCTCATTCCCTTC-AGGACTGTGGTA-TACAGTGCACCTG  1097
      | |||||| |||||| ||||||| || ||||  ||| |||||||||||||
seq2  A-TGTGTG-TTCTCAATCCCTTCAAGAACTGGTGTATTACAGTGCACCTG  1095

seq1  ATGGACAATTGTA-TAATACAG--AACATGGTAGGGAAAGGAATTATA--  1142
      || |||||||||| ||||||||  ||||||||| ||    ||||||||  
seq2  ATTGACAATTGTATTAATACAGAAAACATGGTAAGG-GCCGAATTATAAT  1144

seq1  CTCCTTCAGCTCG--AAAAACAACC  1165
      |||||  ||||||  ||||||||||
seq2  CTCCTCAAGCTCGAAAAAAACAACC  1169


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