BAC Information

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BAC

Clone NameB6Ng01-330N21
Chromosome18 (Build37)
Map Location 38,065,134 - 38,197,083
singlet/doubletdoublet
Overlap geneDiap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
Upstream geneEG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5
Downstream genePcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330N21.bB6Ng01-330N21.g
ACCGA117394GA117395
length1,1811,036
definitionB6Ng01-330N21.b B6Ng01-330N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,065,134 - 38,066,313)(38,196,041 - 38,197,083)
sequence
gaattcaaggccagcctggtctacatagtgagttccaggacagccacagc
tacacagaaaaaccctatctccaaaagtaaaaaacaaaaatttaaaaatt
taaaacccttctaaaaagaaaaccattgtaaatttctcctgccatttcta
agcattcttagcagcatataaccaaaagtatctcatgtataaatttatct
caaaaaaaatgtgtttccctctagccacccaataataaaagtgaccaggg
tacatgaagctctttcccttcaggaggtatctataagcatagagtttaag
ataagtaagcaatatgggacaaagaagtgactgtgttaaaatcgagagct
attgctttctcttctgtgtgttccatggcacttgagatatgaaaatagcc
agagtttaaaacttattctttcaaatcttttagcatgacacctacacagc
aaagaatgcattgcactttagaggtacatatgctatttctctgctaaaca
aatactaataacccgtccttaagtgtaagtgctgacgggggtagaggctg
cgctaaggttcagcttcatcagagcaacccactgaaaatagcagcagcca
tatgcaaaagaaaaaaaaaagtactatggggtttcaaagatgtaagtggc
atctagaatgcaggatgagttctaatttaaaactgcccaaccacgaaagt
aagcatgcaatgggttaaacgaagttagagaagacctcgaatattctgac
actagaacccatgctctcattacagttaaaggaagtcaaaggtaaaatag
ctggtgaatgttaaaatagaaaataagctagagaaaacgagaagaaaata
gagaaaatagtagaggaaatgagctagaacatgcacatgccacacagtat
ctcctttacctcgtctgccatgagccgctttcaaagtctggggaaacaga
gaaaaaagagggagaagaaaaagaaaagagatcagtggagtaccaaggaa
ctcccaaacaccaaagcggttgaagggagaaaggaagagaaaatacatgg
taagggcctaagctaccttcacacactaaaagtttctgtaagggcagtct
ggtgaataagaagagagtggagagcctggacagactcttaatcaatggac
caaccacttatggagagtgttcaccttcatt
gaattcagatctctgccgttacaatctggacacttgctcccagactaggc
tgcctctctctagctcactgatttcctaccttgctgatcctgaaaagaaa
agcttgagagagttaggatttagcataggcagatgggtcgatgtatggca
gtcagcttaccacttcatgggggcttcctgaaaagaggaccccctgggat
gtgccaatcagccaatgttggccaccaaatctcggtccctgaccagcccc
tctcaaaggcaatcccctgctcagcaggagcaatagtagcttgactcctt
caagtccctttctggggtgacttttggctcccatcaattccggagacagg
ctccacattgagttcatgcgtatcaagcatcaattcagggtcaatgctgt
tattatcagaacaggtataaacacggctcgtgtaaggcttaggggcctct
gcctgtttctgtgttcctttctccatgttctaggaccctgaggggctggg
agcaaaggacacgcaaggcttccatttatggtgattcccttacaggcaac
gctcagagtcctattcccttttgcttgctggactccagtgctaaaaaaaa
aaaaaaaaaaaaaaaaaatctgtgctgaataactataaccataggtgcta
ttgttagttgagctgcccagagcctttcttttacagaatcctactcagct
ctgatagtaaccacagaaaggagggattagagaccttcccctaggcgagg
aaactgaggatctagaagattgtgtcatgtgatacaaatcacagccagaa
gaaagggagggaggatgccacagccagaaactcccaggcccttagccggt
gctccttacccccaccccacatagccccttagtaaaaccactggattggc
agaggagcccttacccacctctaggttggctaccacctagccctccccca
catccttgggcgcttaggtttctgccatgctgcgtcttccctgcccacga
cacgtgcaaagcctctctcacagcttattatttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_38065134_38066313
seq2: B6Ng01-330N21.b_47_1227

seq1  GAATTCAAGGCCAGCCTGGTCTACATAGTGAGTTCCAGGACAGCCACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACATAGTGAGTTCCAGGACAGCCACAGC  50

seq1  TACACAGAAAAACCCTATCTCCAAAAGTAAAAAACAAAAATTTAAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAAAAACCCTATCTCCAAAAGTAAAAAACAAAAATTTAAAAATT  100

seq1  TAAAACCCTTCTAAAAAGAAAACCATTGTAAATTTCTCCTGCCATTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCTTCTAAAAAGAAAACCATTGTAAATTTCTCCTGCCATTTCTA  150

seq1  AGCATTCTTAGCAGCATATAACCAAAAGTATCTCATGTATAAATTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTTAGCAGCATATAACCAAAAGTATCTCATGTATAAATTTATCT  200

seq1  CAAAAAAAATGTGTTTCCCTCTAGCCACCCAATAATAAAAGTGACCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAATGTGTTTCCCTCTAGCCACCCAATAATAAAAGTGACCAGGG  250

seq1  TACATGAAGCTCTTTCCCTTCAGGAGGTATCTATAAGCATAGAGTTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAGCTCTTTCCCTTCAGGAGGTATCTATAAGCATAGAGTTTAAG  300

seq1  ATAAGTAAGCAATATGGGACAAAGAAGTGACTGTGTTAAAATCGAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAGCAATATGGGACAAAGAAGTGACTGTGTTAAAATCGAGAGCT  350

seq1  ATTGCTTTCTCTTCTGTGTGTTCCATGGCACTTGAGATATGAAAATAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTCTCTTCTGTGTGTTCCATGGCACTTGAGATATGAAAATAGCC  400

seq1  AGAGTTTAAAACTTATTCTTTCAAATCTTTTAGCATGACACCTACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTAAAACTTATTCTTTCAAATCTTTTAGCATGACACCTACACAGC  450

seq1  AAAGAATGCATTGCACTTTAGAGGTACATATGCTATTTCTCTGCTAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGCATTGCACTTTAGAGGTACATATGCTATTTCTCTGCTAAACA  500

seq1  AATACTAATAACCCGTCCTTAAGTGTAAGTGCTGACGGGGGTAGAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAATAACCCGTCCTTAAGTGTAAGTGCTGACGGGGGTAGAGGCTG  550

seq1  CGCTAAGGTTCAGCTTCATCAGAGCAACCCACTGAAAATAGCAGCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAGGTTCAGCTTCATCAGAGCAACCCACTGAAAATAGCAGCAGCCA  600

seq1  TATGCAAAAGAAAAAAAAAAGTACTATGGGGTTTCAAAGATGTAAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAAGAAAAAAAAAAGTACTATGGGGTTTCAAAGATGTAAGTGGC  650

seq1  ATCTAGAATGCAGGATGAGTTCTAATTTAAAACTGCCCAACCACGAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAATGCAGGATGAGTTCTAATTTAAAACTGCCCAACCACGAAAGT  700

seq1  AAGCATGCAATGGGTTAAACGAAGTTAGAGAAGACCTCGAATATTCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCAATGGGTTAAACGAAGTTAGAGAAGACCTCGAATATTCTGAC  750

seq1  ACTAGAACCCATGCTCTCATTACAGTTAAAGGAAGTCAAAGGTAAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACCCATGCTCTCATTACAGTTAAAGGAAGTCAAAGGTAAAATAG  800

seq1  CTGGTGAATGTTAAAATAGAAAATAAGCTAGAGAAAACGAGAAGAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAATGTTAAAATAGAAAATAAGCTAGAGAAAACGAGAAGAAAATA  850

seq1  GAGAAAATAGTAGAGGAAATGAGCTAGAACATGCACATGCCACACAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATAGTAGAGGAAATGAGCTAGAACATGCACATGCCACACAGTAT  900

seq1  CTCC-TTACCTCGTCTGCCATGAGCCGC-TTCAAAGTCT-GGGAAACAGA  947
      |||| ||||||||||||||||||||||| |||||||||| ||||||||||
seq2  CTCCTTTACCTCGTCTGCCATGAGCCGCTTTCAAAGTCTGGGGAAACAGA  950

seq1  GAAAAAAGGAGGGAGAAGAAAAAGAAAAGAGATCAGTGGAGTACCAAGGA  997
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAA-GAGGGAGAAGAAAAAGAAAAGAGATCAGTGGAGTACCAAGGA  999

seq1  ACCTCCCAAACACCAAAGCGGTTGAAGGGAGAAAGGAAGAGAAAATACAT  1047
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CTCCCAAACACCAAAGCGGTTGAAGGGAGAAAGGAAGAGAAAATACAT  1048

seq1  GGAAAGGCCCTAAGCTACCTCCACACACTAAAAGGTTTCTGTAAGGGGCA  1097
      || |||| |||||||||||| |||||||||||| |||||||||| |||||
seq2  GGTAAGGGCCTAAGCTACCTTCACACACTAAAA-GTTTCTGTAA-GGGCA  1096

seq1  GTCTTGGTG-ATA--GAGAGAGTGGAGAG-CTGAACAGACTCTAAAACCA  1143
      ||| ||||| |||   ||||||||||||| ||| ||||||||| || | |
seq2  GTC-TGGTGAATAAGAAGAGAGTGGAGAGCCTGGACAGACTCTTAATCAA  1145

seq1  ATGACCAACCCACTTATGAGAAGTGTTCAACTTCATT  1180
        |||||| |||||||||   |||||||| |||||||
seq2  TGGACCAA-CCACTTATGGAGAGTGTTCACCTTCATT  1181

seq1: chr18_38196041_38197083
seq2: B6Ng01-330N21.g_67_1102 (reverse)

seq1  TAGAAATAATAAGCCTTGTTGAGAGAGGCTTTGCACGGTGTCGTGGGCCA  50
      ||||||||||||||  || ||||||||||||||||| |||||||||| ||
seq2  TAGAAATAATAAGC--TG-TGAGAGAGGCTTTGCAC-GTGTCGTGGG-CA  45

seq1  GGGAAGGACGCAGCATGGGCAGAAACCTAAGCGCCCAAGGATTGTGGGGA  100
      ||||| |||||||||| |||||||||||||||||||||||||   |||||
seq2  GGGAA-GACGCAGCAT-GGCAGAAACCTAAGCGCCCAAGGATGTGGGGGA  93

seq1  GGGCTTAGGTGGTAGCCAACCTAGAGGTGGGTAAGGGCTCCTCTGCCAAT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGC-TAGGTGGTAGCCAACCTAGAGGTGGGTAAGGGCTCCTCTGCCAAT  142

seq1  CCAGTGGTTTTACTAAGGGGCTATGTGGGGTGGGGGTAAGGAGCACCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTTTTACTAAGGGGCTATGTGGGGTGGGGGTAAGGAGCACCGGC  192

seq1  TAAGGGCCTGGGAG-TTCTGGCTGTGGCATCCTCCCTCCCTTTCTTCTGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAGGGCCTGGGAGTTTCTGGCTGTGGCATCCTCCCTCCCTTTCTTCTGG  242

seq1  CTGTGATTTGTATCACATGACACAATCTTCTAGATCCTCAGTTTCCTCGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTTGTATCACATGACACAATCTTCTAGATCCTCAGTTTCCTCGC  292

seq1  CTAGGGGAAGGTCTCTAATCCCTCCTTTCTGTGGTTACTATCAGAGCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGAAGGTCTCTAATCCCTCCTTTCTGTGGTTACTATCAGAGCTGA  342

seq1  GTAGGATTCTGTAAAAGAAAGGCTCTGGGCAGCTCAACTAACAATAGCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATTCTGTAAAAGAAAGGCTCTGGGCAGCTCAACTAACAATAGCAC  392

seq1  CTATGGTTATAGTTATTCAGCACAGATTTTTTTTTTTTTTTTTTTTTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTTATAGTTATTCAGCACAGATTTTTTTTTTTTTTTTTTTTTTTT  442

seq1  TTAGCACTGGAGTCCAGCAAGCAAAAGGGAATAGGACTCTGAGCGTTGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTGGAGTCCAGCAAGCAAAAGGGAATAGGACTCTGAGCGTTGCC  492

seq1  TGTAAGGGAATCACCATAAATGGAAGCCTTGCGTGTCCTTTGCTCCCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGGAATCACCATAAATGGAAGCCTTGCGTGTCCTTTGCTCCCAGC  542

seq1  CCCTCAGGGTCCTAGAACATGGAGAAAGGAACACAGAAACAGGCAGAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGGTCCTAGAACATGGAGAAAGGAACACAGAAACAGGCAGAGGC  592

seq1  CCCTAAGCCTTACACGAGCCGTGTTTATACCTGTTCTGATAATAACAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGCCTTACACGAGCCGTGTTTATACCTGTTCTGATAATAACAGCA  642

seq1  TTGACCCTGAATTGATGCTTGATACGCATGAACTCAATGTGGAGCCTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTGAATTGATGCTTGATACGCATGAACTCAATGTGGAGCCTGTC  692

seq1  TCCGGAATTGATGGGAGCCAAAAGTCACCCCAGAAAGGGACTTGAAGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAATTGATGGGAGCCAAAAGTCACCCCAGAAAGGGACTTGAAGGAG  742

seq1  TCAAGCTACTATTGCTCCTGCTGAGCAGGGGATTGCCTTTGAGAGGGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTACTATTGCTCCTGCTGAGCAGGGGATTGCCTTTGAGAGGGGCT  792

seq1  GGTCAGGGACCGAGATTTGGTGGCCAACATTGGCTGATTGGCACATCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGACCGAGATTTGGTGGCCAACATTGGCTGATTGGCACATCCCA  842

seq1  GGGGGTCCTCTTTTCAGGAAGCCCCCATGAAGTGGTAAGCTGACTGCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCCTCTTTTCAGGAAGCCCCCATGAAGTGGTAAGCTGACTGCCAT  892

seq1  ACATCGACCCATCTGCCTATGCTAAATCCTAACTCTCTCAAGCTTTTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGACCCATCTGCCTATGCTAAATCCTAACTCTCTCAAGCTTTTCTT  942

seq1  TTCAGGATCAGCAAGGTAGGAAATCAGTGAGCTAGAGAGAGGCAGCCTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATCAGCAAGGTAGGAAATCAGTGAGCTAGAGAGAGGCAGCCTAG  992

seq1  TCTGGGAGCAAGTGTCCAGATTGTAACGGCAGAGATCTGAATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGCAAGTGTCCAGATTGTAACGGCAGAGATCTGAATTC  1036