BAC Information

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BAC

Clone NameB6Ng01-331C14
Chromosome18 (Build37)15 (Build37)
Map Location 82,559,011 - 82,559,30342,319,207 - 42,320,310
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039458, LOC100040871, B020010K11Rik
Downstream geneGalr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331C14.bB6Ng01-331C14.g
ACCGA117609GA117610
length1,0201,100
definitionB6Ng01-331C14.b B6Ng01-331C14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,559,011 - 82,559,303)(42,319,207 - 42,320,310)
sequence
gaattccgctttaatccacagtggtgtgataaggtacagggcattacttc
tttttcttgtatctgttgacgcttgttttgcgactgactatatggtccat
tttgaagaaggatccatgaggtgctaagaagctacatttttttgggtgaa
ttattctataaatgtttgttaggtccatttgattcataatgtctgttagt
ttcattatttttctgtttactttttgtctcaatatcctgtaatttattga
gagtgggggattgaagtcttccactattagtatgtggggttcaatgtgtg
atttgggctttagcaatgtttctttttcccctgtgagtactcttgtgttt
gcggcaaaaacgcccataattgacatatcatctcaatataaattaccttt
aatgagagtgaaacaaccttccctgcctcttatgattattcttggatgaa
aaactattttattagatatatgaatggcttcttcagcttgcttcttggga
cagtttgcttgaaaaacatttttccgtccctttactccgaggtagtgttt
atcttttgggttgacgtgcgcctcctgcatgataaaaaatgttgcttcgt
tgtttctgcatccattcactagatagactaagtctattcttcttggactt
gagtttcttgatgtcagagaggagagagagagtcagtgattgctatatct
ttatatatagatgttctccggtgtgtatctcataccacagagagctccgc
agaaaggcaagccctggggtccacccggggtttcctgagcagttcagcaa
ggctttgcacacgctacgccatggatcctgaggaatcccgtgttcatgat
ttttggaatccccctggaatgctccaggattggcactaatttctgtctat
agcaaatctctttccttcttgggcacaatggcaggtggccacatggtcaa
ctgtactcggtggtcctacgtgacactgaatggaagggtgggtaacttac
aaccttcaggcaagcaggca
gaattctttcacaccatctcagagccataatgactgataagataattttt
ttcactgctctgcattatttggactaaagtgcctttcccatagcctgatt
acaatggtatgaacatgcgatcattattttcggtctctggccttctttaa
gaaggtgctgcaaagcatctgcttccttcctcagactgcagagtcctttg
gctctgttctcagaataattctaccatctgaaaggaatttacctcctgtg
cagtgtctactgaggttgcgaggtaaatcatccagtcaagagatgggata
gtttgaactgcatgtctcttgggttcagaatgactctaaaaacacggcaa
gaggtgggaggaaattaaaagtttttgaaggccactcagataaatgttgg
gaaaataggaaatatcactttcattgactgagtgaaatacctgatatttt
tgctgaccacttgtaatgcacaatttaatgttaggtagaaagagaaagga
aaataaacacagacatcagctacacactacagtgagagcttgttcccatt
tagcagggaaaatgctttatcttaacagaaaattgtatgtcagaaattta
caatttctgtaaaatgaactacactatctagcacttcctttcacaaaaca
gagcggctttagggggaaggggctgtttatgtttagacacggcttgcttc
tccttgtagagtgagcatgttatctgccttttgaaaagttgtaatttctg
taaaaggaataaaaacgataaatagtgaatagctgaactagtgataacaa
aattaaaaactccagttgctgacctcatgcatgaactatttgtaaaccac
atcttttgagggagatttgaaattttgtggttctcttttggaattagagt
ttcaacttcagagactagttgaactatctataaagcactatctcttgggt
tccggctaggctgtatattcccatgatgaaggccctgaataaagcttcct
tgatgttctaacataccatgaacaaactactttcaggttctctttgtgca
ccattagcttgctcaggttcaagccacaagtacaatggctagaatagtaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_82559011_82559303
seq2: B6Ng01-331C14.b_771_1064

seq1  ATCTCAGACCACAGAGAGCTCCGCAGAAGGGCAAGCCCTGGGGTCCACCC  50
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCTCATACCACAGAGAGCTCCGCAGAAAGGCAAGCCCTGGGGTCCACCC  50

seq1  GGGGTTTCCTGAGCAGTTCAGCAAGGCTTTGCACACGCTACGCCATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTCCTGAGCAGTTCAGCAAGGCTTTGCACACGCTACGCCATGGAT  100

seq1  CCTGAGGAATCCCGTGTTCATGATTTTTGGAATCCCCCTGGAA-GCTCCA  149
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTGAGGAATCCCGTGTTCATGATTTTTGGAATCCCCCTGGAATGCTCCA  150

seq1  GGATTGGCACTAATTTCTGTCTATAGCAAATCTC-TTCCTTCATAGGGCA  198
      |||||||||||||||||||||||||||||||||| ||||||| | |||||
seq2  GGATTGGCACTAATTTCTGTCTATAGCAAATCTCTTTCCTTC-TTGGGCA  199

seq1  CAATGGCAGGTGGCCACATGGTCAACTGTACTCGGTGGCCCTACCGTGAC  248
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  CAATGGCAGGTGGCCACATGGTCAACTGTACTCGGTGGTCCTA-CGTGAC  248

seq1  ACTGAATGGAAGGGTTGGTTACCTACAA-CTTCAGGCAAGCAGGCA  293
      ||||||||||||||| ||| || ||||| |||||||||||||||||
seq2  ACTGAATGGAAGGGTGGGTAACTTACAACCTTCAGGCAAGCAGGCA  294

seq1: chr15_42319207_42320310
seq2: B6Ng01-331C14.g_68_1167 (reverse)

seq1  TTACTTATTCTAACCATTTGTACTTTGTTGCCTGAA-CTGAGCAAGCTAT  49
      |||| ||||||| ||| |||||| |||| || |||| |||||||||||| 
seq2  TTAC-TATTCTAGCCA-TTGTAC-TTGTGGCTTGAACCTGAGCAAGCTAA  47

seq1  GGGTGCAC-AAGAGAACCTGGAAGTTAGTTTGTTCATTGTTATGTTAGAA  98
       ||||||| ||||||||||| ||| ||||||||||| || ||||||||||
seq2  TGGTGCACAAAGAGAACCTGAAAG-TAGTTTGTTCA-TGGTATGTTAGAA  95

seq1  CATCAAGGGAAGCTTTATTCAGGGCCTTTCATCATGGGAATATACAGCCT  148
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  CATCAA-GGAAGCTTTATTCAGGGCC-TTCATCATGGGAATATACAGCCT  143

seq1  AGCCGGAA-CCAAGAGATAGTGCTTTATAGATAGTTCAACTAGTCTCTGA  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGAACCCAAGAGATAGTGCTTTATAGATAGTTCAACTAGTCTCTGA  193

seq1  AGTTGAAACTCTAATTCCAAAAGAGAACCACAAAATTTCAAATCTCCCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAACTCTAATTCCAAAAGAGAACCACAAAATTTCAAATCTCCCTC  243

seq1  AAAAGATGTGGTTTACAAATAGTTCATGCATGAGGTCAGCAACTGGAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTGGTTTACAAATAGTTCATGCATGAGGTCAGCAACTGGAGTT  293

seq1  TTTAATTTTGTTATCACTAGTTCAGCTATTCACTATTTATCGTTTTTATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTGTTATCACTAGTTCAGCTATTCACTATTTATCGTTTTTATT  343

seq1  CCTTTTACAGAAATTACAACTTTTCAAAAGGCAGATAACATGCTCACTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACAGAAATTACAACTTTTCAAAAGGCAGATAACATGCTCACTCT  393

seq1  ACAAGGAGAAGCAAGCCGTGTCTAAACATAAACAGCCCCTTCCCCCTAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGAAGCAAGCCGTGTCTAAACATAAACAGCCCCTTCCCCCTAAA  443

seq1  GCCGCTCTGTTTTGTGAAAGGAAGTGCTAGATAGTGTAGTTCATTTTACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTCTGTTTTGTGAAAGGAAGTGCTAGATAGTGTAGTTCATTTTACA  493

seq1  GAAATTGTAAATTTCTGACATACAATTTTCTGTTAAGATAAAGCATTTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTAAATTTCTGACATACAATTTTCTGTTAAGATAAAGCATTTTC  543

seq1  CCTGCTAAATGGGAACAAGCTCTCACTGTAGTGTGTAGCTGATGTCTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAAATGGGAACAAGCTCTCACTGTAGTGTGTAGCTGATGTCTGTG  593

seq1  TTTATTTTCCTTTCTCTTTCTACCTAACATTAAATTGTGCATTACAAGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCCTTTCTCTTTCTACCTAACATTAAATTGTGCATTACAAGTG  643

seq1  GTCAGCAAAAATATCAGGTATTTCACTCAGTCAATGAAAGTGATATTTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAAAAATATCAGGTATTTCACTCAGTCAATGAAAGTGATATTTCC  693

seq1  TATTTTCCCAACATTTATCTGAGTGGCCTTCAAAAACTTTTAATTTCCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCAACATTTATCTGAGTGGCCTTCAAAAACTTTTAATTTCCTC  743

seq1  CCACCTCTTGCCGTGTTTTTAGAGTCATTCTGAACCCAAGAGACATGCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTTGCCGTGTTTTTAGAGTCATTCTGAACCCAAGAGACATGCAG  793

seq1  TTCAAACTATCCCATCTCTTGACTGGATGATTTACCTCGCAACCTCAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTATCCCATCTCTTGACTGGATGATTTACCTCGCAACCTCAGTA  843

seq1  GACACTGCACAGGAGGTAAATTCCTTTCAGATGGTAGAATTATTCTGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGCACAGGAGGTAAATTCCTTTCAGATGGTAGAATTATTCTGAGA  893

seq1  ACAGAGCCAAAGGACTCTGCAGTCTGAGGAAGGAAGCAGATGCTTTGCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCAAAGGACTCTGCAGTCTGAGGAAGGAAGCAGATGCTTTGCAG  943

seq1  CACCTTCTTAAAGAAGGCCAGAGACCGAAAATAATGATCGCATGTTCATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTTAAAGAAGGCCAGAGACCGAAAATAATGATCGCATGTTCATA  993

seq1  CCATTGTAATCAGGCTATGGGAAAGGCACTTTAGTCCAAATAATGCAGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTAATCAGGCTATGGGAAAGGCACTTTAGTCCAAATAATGCAGAG  1043

seq1  CAGTGAAAAAAATTATCTTATCAGTCATTATGGCTCTGAGATGGTGTGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAAAAATTATCTTATCAGTCATTATGGCTCTGAGATGGTGTGAA  1093

seq1  AGAATTC  1104
      |||||||
seq2  AGAATTC  1100