BAC Information

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BAC

Clone NameB6Ng01-332A24
Chromosome18 (Build37)
Map Location 88,389,852 - 88,526,198
singlet/doubletdoublet
Overlap geneLOC100039972
Upstream geneLOC383318, Ppia-ps18_1039.1, LOC329008, LOC100039961
Downstream geneLOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332A24.bB6Ng01-332A24.g
ACCGA118270GA118271
length588307
definitionB6Ng01-332A24.b B6Ng01-332A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,525,611 - 88,526,198)(88,389,852 - 88,390,158)
sequence
gaattcagcaaacagggatctaagtcatggctaagatggtttgagttttt
catacaggcaaaaaacaaaggctttgaactatattcatctctaacaaagg
gttagtgcctagaatacacaaagaaccaaaaaccaaaaaccaaaaacaaa
acaaaagaaaacaaaacaaagaaactaaacactacaaaagcaatccaaat
aaacatggaagcacagaactaatcaaagcattctccaaataaaaaataca
aattgttgagaaatactgttttaaaatgtttagccattcttagccatcac
tgagctgcaaattcaaaatatttcaagatttcattttactccagtcacaa
tggctcagataaaagatagcaaatgtggggagctaggaacacttattcac
agttgattcacaggggtacaaactggtgcaagcattatgaacagcaatgt
ggaggctcctcaaaaagctataaatagatcgaccacataatccagctgcc
taagtgtgcacatacacataaagaattctataatgtagatatgtgctcat
ctatgttcattgctgctctattcacaacagcagatgaa

taattagttgaaaaaagggaaagaaaccaatctgctgggttacttagata
gataaggttatggcacaggtaaatactttcaacacaatgaacatccacca
ggatagtttacaggtaggaaataaactctgagaccctgtttgcaaacata
agaacaaccgttttttattgtggaagcataaactgaactgtcttcatcca
ggagaatctagacaagaactgaagacactggttgatgtgaaaggttagat
caatgcctggtattgccatgtaagaaatcaagtgggttttttttttgggg
ggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88525611_88526198
seq2: B6Ng01-332A24.b_46_633 (reverse)

seq1  TTCATCTGCTGTTGTGAATAGAGCAGCAATGAACATAGATGAGCACATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGCTGTTGTGAATAGAGCAGCAATGAACATAGATGAGCACATAT  50

seq1  CTACATTATAGAATTCTTTATGTGTATGTGCACACTTAGGCAGCTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTATAGAATTCTTTATGTGTATGTGCACACTTAGGCAGCTGGATT  100

seq1  ATGTGGTCGATCTATTTATAGCTTTTTGAGGAGCCTCCACATTGCTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCGATCTATTTATAGCTTTTTGAGGAGCCTCCACATTGCTGTTC  150

seq1  ATAATGCTTGCACCAGTTTGTACCCCTGTGAATCAACTGTGAATAAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTTGCACCAGTTTGTACCCCTGTGAATCAACTGTGAATAAGTGT  200

seq1  TCCTAGCTCCCCACATTTGCTATCTTTTATCTGAGCCATTGTGACTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTCCCCACATTTGCTATCTTTTATCTGAGCCATTGTGACTGGAG  250

seq1  TAAAATGAAATCTTGAAATATTTTGAATTTGCAGCTCAGTGATGGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAATCTTGAAATATTTTGAATTTGCAGCTCAGTGATGGCTAAG  300

seq1  AATGGCTAAACATTTTAAAACAGTATTTCTCAACAATTTGTATTTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTAAACATTTTAAAACAGTATTTCTCAACAATTTGTATTTTTTAT  350

seq1  TTGGAGAATGCTTTGATTAGTTCTGTGCTTCCATGTTTATTTGGATTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATGCTTTGATTAGTTCTGTGCTTCCATGTTTATTTGGATTGCT  400

seq1  TTTGTAGTGTTTAGTTTCTTTGTTTTGTTTTCTTTTGTTTTGTTTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTGTTTAGTTTCTTTGTTTTGTTTTCTTTTGTTTTGTTTTTGGT  450

seq1  TTTTGGTTTTTGGTTCTTTGTGTATTCTAGGCACTAACCCTTTGTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTTGGTTCTTTGTGTATTCTAGGCACTAACCCTTTGTTAGAG  500

seq1  ATGAATATAGTTCAAAGCCTTTGTTTTTTGCCTGTATGAAAAACTCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATAGTTCAAAGCCTTTGTTTTTTGCCTGTATGAAAAACTCAAAC  550

seq1  CATCTTAGCCATGACTTAGATCCCTGTTTGCTGAATTC  588
      ||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGCCATGACTTAGATCCCTGTTTGCTGAATTC  588


seq1: chr18_88389852_88390158
seq2: B6Ng01-332A24.g_72_378

seq1  TAATTAGTTGAAAAAAGGGAAAGAAACCAATCTGCTGGGTTACTTAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTTGAAAAAAGGGAAAGAAACCAATCTGCTGGGTTACTTAGATA  50

seq1  GATAAGGTTATGGCACAGGTAAATACTTTCAACACAATGAACATCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGTTATGGCACAGGTAAATACTTTCAACACAATGAACATCCACCA  100

seq1  GGATAGTTTACAGGTAGGAAATAAACTCTGAGACCCTGTTTGCAAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTTTACAGGTAGGAAATAAACTCTGAGACCCTGTTTGCAAACATA  150

seq1  AGAACAACCGTTTTTTATTGTGGAAGCATAAACTGAACTGTCTTCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACCGTTTTTTATTGTGGAAGCATAAACTGAACTGTCTTCATCCA  200

seq1  GGAGAATCTAGACAAGAACTGAAGACACTGGTTGATGTGAAAGGTTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCTAGACAAGAACTGAAGACACTGGTTGATGTGAAAGGTTAGAT  250

seq1  CAATGCCTGGTATTGCCATGTAAGAAATCAAGTGGGTTTTTTTTTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCTGGTATTGCCATGTAAGAAATCAAGTGGGTTTTTTTTTTGGGG  300

seq1  GGGGGGG  307
      |||||||
seq2  GGGGGGG  307


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