BAC Information

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BAC

Clone NameB6Ng01-335J12
Chromosome18 (Build37)
Map Location 57,411,588 - 57,563,101
singlet/doubletdoublet
Overlap geneMegf10, LOC672445, Prrc1
Upstream geneLOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
Downstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335J12.bB6Ng01-335J12.g
ACCGA120771GA120772
length1,1121,098
definitionB6Ng01-335J12.b B6Ng01-335J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,411,588 - 57,412,691)(57,562,012 - 57,563,101)
sequence
gaattcttttgaagaattcattctgctactccagaatttctcttgtggtt
aagctctcagtggcagcaggctgacaagtgcagtgagagagttctaggag
cagtgaaacttgatcttaggagcccctctttgcatttcttcatcaagtgt
agtgcagactggagccagagtcaaccagcaaaacgttagaagactcccaa
gctttcccctctatacttagcatcccaatatcgacgctcgccacacccta
gcattagaactgtgcccagcctggtagaaaggctgtttctcttggaactg
cttctgtgccattgcttctaagcaggtcttgctgcttgcacggttcagat
ctggaaaacacaagactgacctacatttaaaaaaaaaaaatcagagtctg
gcatggcaggaaagccacatgggaagtgtctgctgagacagtgaccccta
ctgtgctgtgtgctccgctagatgagactgcatgtctgtcttcttggcag
aatcctcccaatcgcctcacctctccaaaaggagatttggctggccccgt
taactattcatgctttctatgaagtagctagggatcctttcactcctcca
gggaccagcctccctcctcaagcagcttaccaaagtatcccccctctctg
agccattgcttcttccttataaagactctaaggtgaaacctataaacttt
ataacctataaactggggtagagggcctctgattttggaaggttcagaat
tcctcgagtctttgtatttagtttctcctgctacagatcgatccatctcg
ttactttcctatggaataaatacgaaatactatgggttcacaaagcattt
cgactctgtatgcaattagtttgaaccaactattggtctcttgtttgaat
aggtgtcaagacgaatgtcctgttgggagctatggaagtttcgctgtgct
tgaggcctgcaggtgtgtcaaccggaaggcaagtgttaccacgtgagtgg
taacatgccctgtgcgaagcatgcttttttctggtgacttttgctgaggc
gcgctgtgtccgaagggcttacgcatcaatggtgacaagccgtgtccctg
ccaccttgacaa
gaattccaaccttccctaactaatggttccttggtcacttccttaccacc
ctccactggatagctcagatcttctgggctgtagacttgcactgggatac
tgttacacagatctactctgatcccctcagtcccctggtccttttaatct
ccacagagagaattcagacaggatttaggcagaataatgtaaaagatagg
cagggtatattacagagaagggggggcaccctggaggggtaattgtggca
atggccgaggggatcagtacaaaggaaagtactctgacatgacaagactt
gacaacggccagagaaagcactgcacagggtactgtcttaagaggtaaga
atggataatggccaaagaaaccattgtgccaactcacatgccttggtagg
ctttttactatctcttaaagtcctggaacggacagccttcctggggagtg
ttttcctgtctaggtagtagacaggctcatttgaatgaactcttatgtga
ggggacataaaaggctttatcagccagaaagcttcctgctaaatagtaat
cctatgttctttgtgggtgcagtttaatatgtcctgtctctaccctaggc
caaagacatggctcagacactattcttttgaccttagtcaagattcctga
aggttcagttcctgggtttgcaatatgctgattatgaaggggggtgtcct
cccccgagtctctttccttctagacaacagtatctggatagttccctggc
aactatagctgaggaattaagtaaggaagtgtcctctcactgctcagtat
ttttctaaggacggcatagctccttcccttttaaacatctgtagaatgag
acagccactccaatgcaaacaggttcagatttatttagaagatgcagtgt
ttcatcttggtggtcaatttaacacacctgggaagaagaagcctcaactg
aagaattgcttcaatcagactggcccgtagacaggtctatgggacattat
tcttgatggctaattgacgtaggagagagcagcccactggtgggtgactt
ctgtacccagatagtcatgctttgggcttgataagaacacgaggcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_57411588_57412691
seq2: B6Ng01-335J12.b_51_1162

seq1  GAATTCTTTTGAAGAATTCATTCTGCTACTCCAGAATTTCTCTTGTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAAGAATTCATTCTGCTACTCCAGAATTTCTCTTGTGGTT  50

seq1  AAGCTCTCAGTGGCAGCAGGCTGACAAGTGCAGTGAGAGAGTTCTAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCAGTGGCAGCAGGCTGACAAGTGCAGTGAGAGAGTTCTAGGAG  100

seq1  CAGTGAAACTTGATCTTAGGAGCCCCTCTTTGCATTTCTTCATCAAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAACTTGATCTTAGGAGCCCCTCTTTGCATTTCTTCATCAAGTGT  150

seq1  AGTGCAGACTGGAGCCAGAGTCAACCAGCAAAACGTTAGAAGACTCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGACTGGAGCCAGAGTCAACCAGCAAAACGTTAGAAGACTCCCAA  200

seq1  GCTTTCCCCTCTATACTTAGCATCCCAATATCGACGCTCGCCACACCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCCTCTATACTTAGCATCCCAATATCGACGCTCGCCACACCCTA  250

seq1  GCATTAGAACTGTGCCCAGCCTGGTAGAAAGGCTGTTTCTCTTGGAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGAACTGTGCCCAGCCTGGTAGAAAGGCTGTTTCTCTTGGAACTG  300

seq1  CTTCTGTGCCATTGCTTCTAAGCAGGTCTTGCTGCTTGCACGGTTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGCCATTGCTTCTAAGCAGGTCTTGCTGCTTGCACGGTTCAGAT  350

seq1  CTGGAAAACACAAGACTGACCTACATTTAAAAAAAAAAAATCAGAGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAACACAAGACTGACCTACATTTAAAAAAAAAAAATCAGAGTCTG  400

seq1  GCATGGCAGGAAAGCCACATGGGAAGTGTCTGCTGAGACAGTGACCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAGGAAAGCCACATGGGAAGTGTCTGCTGAGACAGTGACCCCTA  450

seq1  CTGTGCTGTGTGCTCCGCTAGATGAGACTGCATGTCTGTCTTCTTGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGTGTGCTCCGCTAGATGAGACTGCATGTCTGTCTTCTTGGCAG  500

seq1  AATCCTCCCAATCGCCTCACCTCTCCAAAAGGAGATTTGGCTGGCCCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCCAATCGCCTCACCTCTCCAAAAGGAGATTTGGCTGGCCCCGT  550

seq1  TAACTATTCATGCTTTCTATGAAGTAGCTAGGGATCCTTTCACTCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTCATGCTTTCTATGAAGTAGCTAGGGATCCTTTCACTCCTCCA  600

seq1  GGGACCAGCCTCCCTCCTCAAGCAGCTTACCAAAGTATCCCCCCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAGCCTCCCTCCTCAAGCAGCTTACCAAAGTATCCCCCCTCTCTG  650

seq1  AGCCATTGCTTCTTCCTTATAAAGACTCTAAGGTGAAACCTATAAACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGCTTCTTCCTTATAAAGACTCTAAGGTGAAACCTATAAACTTT  700

seq1  ATAACCTATAAACTGGGGTAGAGGGCCTCTGATTTTGGAAGGTTCAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTATAAACTGGGGTAGAGGGCCTCTGATTTTGGAAGGTTCAGAAT  750

seq1  TCCTCGAGTCTTTGTATTTAG-TTCTCCTGCTACAGATCGATCCATCTCG  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTCGAGTCTTTGTATTTAGTTTCTCCTGCTACAGATCGATCCATCTCG  800

seq1  TTACTTTCCTATGGAATAAATACGAAATACTATGGGTTCACAAAGCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCCTATGGAATAAATACGAAATACTATGGGTTCACAAAGCATTT  850

seq1  CGAC-CTGTATGCAATTAGGTTGAACCAACTATTGGTCTCTTGTTTGAAT  898
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGACTCTGTATGCAATTAGTTTGAACCAACTATTGGTCTCTTGTTTGAAT  900

seq1  AGGTGTCAGGACGAATGTCCTGTTGGGAGCTATGGA--GTTCGCTGTGC-  945
      |||||||| |||||||||||||||||||||||||||   |||||||||| 
seq2  AGGTGTCAAGACGAATGTCCTGTTGGGAGCTATGGAAGTTTCGCTGTGCT  950

seq1  TGAGGCCTGCAGGTGTGTCAAC--GGAGGCAAGTGTTACCACGTGAGTGG  993
      ||||||||||||||||||||||  | ||||||||||||||||||||||||
seq2  TGAGGCCTGCAGGTGTGTCAACCGGAAGGCAAGTGTTACCACGTGAGTGG  1000

seq1  T-ACATG-CCTGTGCGAAGCAGGC--TTTTCGGGTGAACTTTGC-GAGGC  1038
      | ||||| ||||||||||||| ||  ||||| |||||  ||||| |||||
seq2  TAACATGCCCTGTGCGAAGCATGCTTTTTTCTGGTGACTTTTGCTGAGGC  1050

seq1  GCGCCTGTGTCCCGAGGGGCTTTACGGCATCAAATGTGACAAGCGGTGCC  1088
      ||| |||||| |||| |||| |||| |||||||  ||||||||| ||| |
seq2  GCG-CTGTGT-CCGAAGGGC-TTAC-GCATCAATGGTGACAAGCCGTGTC  1096

seq1  CCTGCCACCTGGACAA  1104
      |||||||||| |||||
seq2  CCTGCCACCTTGACAA  1112

seq1: chr18_57562012_57563101
seq2: B6Ng01-335J12.g_68_1165 (reverse)

seq1  CAGG-CTCGTGTTCTTATCCAGCCC-AAGCCTGACTATCTGGGGACAG-A  47
      |||| |||||||||||||| ||||| |||| |||||||||||| |||| |
seq2  CAGGCCTCGTGTTCTTATCAAGCCCAAAGCATGACTATCTGGGTACAGAA  50

seq1  GTCACCCA-CAGTGGGCTGCTCTCTCCTACGTCAATTAGCCATCAAGAAT  96
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCACCAGTGGGCTGCTCTCTCCTACGTCAATTAGCCATCAAGAAT  100

seq1  -ATGTCCCATAGACCTGTCTACGGGCCAGTCTGATTGAAGCAATTCTTCA  145
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCATAGACCTGTCTACGGGCCAGTCTGATTGAAGCAATTCTTCA  150

seq1  GTTGAGGCTTCTTCTTCCCAGGTGTGTTAAATTGACCACCAAGATGAACC  195
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTGAGGCTTCTTCTTCCCAGGTGTGTTAAATTGACCACCAAGATGAAAC  200

seq1  ACTGCATCTTCTAAATAAATCTG-ACCTGTTTGCATTGGAGTGGCTGTCT  244
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTGCATCTTCTAAATAAATCTGAACCTGTTTGCATTGGAGTGGCTGTCT  250

seq1  CATTCTACAGATGTTT-AAATGGAAGGAGCTATGCCGTCCTTAGAAAAAT  293
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  CATTCTACAGATGTTTAAAAGGGAAGGAGCTATGCCGTCCTTAGAAAAAT  300

seq1  ACTGAGCAGTGAGAGGACACTTCCTTACTTAATTCCTCAGCTATAGTTGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAGTGAGAGGACACTTCCTTACTTAATTCCTCAGCTATAGTTGC  350

seq1  CAGGGAACTATCCAGATACTGTTGTCTAGAAGG-AAGAGACTCGGGGGAG  392
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGGGAACTATCCAGATACTGTTGTCTAGAAGGAAAGAGACTCGGGGGAG  400

seq1  GACACCCCCCTTCATAATCAGCATATTGCAAACCCAGGAACTGAACCTTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCCCCTTCATAATCAGCATATTGCAAACCCAGGAACTGAACCTTC  450

seq1  AGGAATCTTGACTAAGGTCAAAAGAATAGTGTCTGAGCCATGTCTTTGGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTGACTAAGGTCAAAAGAATAGTGTCTGAGCCATGTCTTTGGC  500

seq1  CTAGGGTAGAGACAGGACATATTAAACTGCACCCACAAAGAACATAGGAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTAGAGACAGGACATATTAAACTGCACCCACAAAGAACATAGGAT  550

seq1  TACTATTTAGCAGGAAGCTTTCTGGCTGATAAAGCCTTTTATGTCCCCTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTAGCAGGAAGCTTTCTGGCTGATAAAGCCTTTTATGTCCCCTC  600

seq1  ACATAAGAGTTCATTCAAATGAGCCTGTCTACTACCTAGACAGGAAAACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAGTTCATTCAAATGAGCCTGTCTACTACCTAGACAGGAAAACA  650

seq1  CTCCCCAGGAAGGCTGTCCGTTCCAGGACTTTAAGAGATAGTAAAAAGCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGGAAGGCTGTCCGTTCCAGGACTTTAAGAGATAGTAAAAAGCC  700

seq1  TACCAAGGCATGTGAGTTGGCACAATGGTTTCTTTGGCCATTATCCATTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGGCATGTGAGTTGGCACAATGGTTTCTTTGGCCATTATCCATTC  750

seq1  TTACCTCTTAAGACAGTACCCTGTGCAGTGCTTTCTCTGGCCGTTGTCAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTTAAGACAGTACCCTGTGCAGTGCTTTCTCTGGCCGTTGTCAA  800

seq1  GTCTTGTCATGTCAGAGTACTTTCCTTTGTACTGATCCCCTCGGCCATTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCATGTCAGAGTACTTTCCTTTGTACTGATCCCCTCGGCCATTG  850

seq1  CCACAATTACCCCTCCAGGGTGCCCCCCCTTCTCTGTAATATACCCTGCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTACCCCTCCAGGGTGCCCCCCCTTCTCTGTAATATACCCTGCC  900

seq1  TATCTTTTACATTATTCTGCCTAAATCCTGTCTGAATTCTCTCTGTGGAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTACATTATTCTGCCTAAATCCTGTCTGAATTCTCTCTGTGGAG  950

seq1  ATTAAAAGGACCAGGGGACTGAGGGGATCAGAGTAGATCTGTGTAACAGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGGACCAGGGGACTGAGGGGATCAGAGTAGATCTGTGTAACAGT  1000

seq1  ATCCCAGTGCAAGTCTACAGCCCAGAAGATCTGAGCTATCCAGTGGAGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTGCAAGTCTACAGCCCAGAAGATCTGAGCTATCCAGTGGAGGG  1050

seq1  TGGTAAGGAAGTGACCAAGGAACCATTAGTTAGGGAAGGTTGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGAAGTGACCAAGGAACCATTAGTTAGGGAAGGTTGGAATTC  1098