BAC Information

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BAC

Clone NameB6Ng01-336N07
Chromosome18 (Build37)
Map Location 7,587,631 - 7,693,936
singlet/doubletdoublet
Overlap geneMpp7, LOC100039562
Upstream gene4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, EG622384
Downstream geneLOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158, EG545242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336N07.bB6Ng01-336N07.g
ACCGA121639GA121640
length1,026946
definitionB6Ng01-336N07.b B6Ng01-336N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,693,289 - 7,693,936)(7,587,631 - 7,588,562)
sequence
gaattcaacactgtttttattttccttaattccctcatgactaaagatgt
tgagcactttacatgtattgccctttatgtctttggagaattgcctgttc
acttgctcagctattcattgggtgagtttgtcttatagtgctttattttc
tttaagttttttttaaatagtgattatgtagctgaggttttctttgatct
ctaaacctgactgggatgactggtgtacaccctggtggctgacttgagtt
ctttataagttgtgggtgttcgcccatgttcagttgaacagttattaaat
attttctcctgttcttcacccttcctggctctgtttctatggctttacaa
aaactgtgtcacttcaggtaggcctgtttgttaattcctgcctttcttta
cccagccttaggcctctacctcaggaggtcactgtatgctctacatactg
aggtgtttgcccactatttctcttggcatttgaaaggttcggattcagag
tccaatctgaattcttcggtctgtttttgagttgactttcgtgcaaaatc
aaagacaggggcctggtttttattactctacatgtgaatatacaacttcc
ccagtaccgtttgtgaaagagaaagtctttgttctaacctaggttttttg
caactttgtgttaaatcaggaggatgtggctgtctgggttgacttctggg
gtctcacattcctttcctttggtcaatatattgcatttttttatgccaac
gccgtgctggttttgttaccacggctctgtaatgtatttttaaatcagtt
attgtagtagccccagcattgctccttttgttcagaatatttgggtcttt
atgtttcagtatgaattttagggctttaaaaactcctgtaaccaggagcg
caaaatggcggaaccgctcaaatcccagctcttcggcgcggctgctgtcc
tgagaagaagcattcgcaaactacaacctttcgtcgcgggagccacgggg
ttctacgtctgccaagaggttcgcgc

gaattccatggtgtacttggtcttagtaagtgactatatggtcttggagg
tagttatggtgtatttggtcttagtaagtgactatatggtctagttttat
aatttggtgattaaaacttaactctgacaggaattcttgtttttcccttg
caaactgtaaaacttgacctcatacccagcatgagacagtcatgttgagg
ttgggggtggggaggctctgattggtcactgcctcatttaataacatcct
atgcaaaagaggggtgtgggctgaaaaagagaattaacaacagcctcaag
ttcccatgggaagtcatcttttactacagttattaataacaaacttaatt
gtaggtttctatgtttctcctcttggccagtagctttgaagttctaatcc
acaaacactttttttgcaccagaaaatcaaccatgtctaccttgaattat
ttacaatggaaagcagttaaaaaaaacttcaggtattacagtttcacaat
ataaatgtttcaaatatttttaaggttgtcctcatcttaagaatgtgtga
aatagttctatagggagtggggaaaggctgggtccaaaagccaggaaaca
ggtaaacgggctgctgcacccccaacccctgagtctgaccctgggatcca
cagtgggagggaagcagtgccagacagtttaccctttcaaccccccacac
ccacgttttctggggtttccaacccccactgagaagacgcatccatcatt
acacacacagagaaataatcctataaaaaatgctacaagatgctgctgca
aggaaagcaaatgactatctgagttcatctattaaggcccccaaggcagg
agaaacagaaacaactttttaaggctactcatcaactaaaccgatagtgg
gggggaaaacattacatttttctgatttttatacaatctgaaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_7693289_7693936
seq2: B6Ng01-336N07.b_430_1078 (reverse)

seq1  GCGCGAACCTTCTTGGCAGACGTAGAACCCGGTGGCTCCCGCG-CGGAAG  49
      ||||||||| |||||||||||||||||||| |||||||||||| || |||
seq2  GCGCGAACC-TCTTGGCAGACGTAGAACCCCGTGGCTCCCGCGACGAAAG  49

seq1  GTTGTAGTTTGCCGAATGCTTCCTTCTCAGGACAGCAGCCGCGCCG-AGA  98
      ||||||||||| ||||||||| |||||||||||||||||||||||| |||
seq2  GTTGTAGTTTG-CGAATGCTT-CTTCTCAGGACAGCAGCCGCGCCGAAGA  97

seq1  GCTGGG-TTTG-GCGGTTCCGCCATTTTGCGCTCCTGGTTACAGGAGTTT  146
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTTGAGCGGTTCCGCCATTTTGCGCTCCTGGTTACAGGAGTTT  147

seq1  TTAAAGCCCTAAAATTCATACTGAAACATAAAGACCCAAATATTCTGAAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCCTAAAATTCATACTGAAACATAAAGACCCAAATATTCTGAAC  197

seq1  AAAAGGAGCAATGCTGGGGCTACTACAATAACTGATTTAAAAATACATTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGCAATGCTGGGGCTACTACAATAACTGATTTAAAAATACATTA  247

seq1  CAGAGCCGTGGTAACAAAACCAGCACGGCGTTGGCATAAAAAAATGCAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCGTGGTAACAAAACCAGCACGGCGTTGGCATAAAAAAATGCAAT  297

seq1  ATATTGACCAAAGGAAAGGAATGTGAGACCCCAGAAGTCAACCCAGACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACCAAAGGAAAGGAATGTGAGACCCCAGAAGTCAACCCAGACAG  347

seq1  CCACATCCTCCTGATTTAACACAAAGTTGCAAAAAACCTAGGTTAGAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTCCTGATTTAACACAAAGTTGCAAAAAACCTAGGTTAGAACA  397

seq1  AAGACTTTCTCTTTCACAAACGGTACTGGGGAAGTTGTATATTCACATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTCTCTTTCACAAACGGTACTGGGGAAGTTGTATATTCACATGT  447

seq1  AGAGTAATAAAAACCAGGCCCCTGTCTTTGATTTTGCACGAAAGTCAACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATAAAAACCAGGCCCCTGTCTTTGATTTTGCACGAAAGTCAACT  497

seq1  CAAAAACAGACCGAAGAATTCAGATTGGACTCTGAATCCGAACCTTTCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAGACCGAAGAATTCAGATTGGACTCTGAATCCGAACCTTTCAA  547

seq1  ATGCCAAGAGAAATAGTGGGCAAACACCTCAGTATGTAGAGCATACAGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGAGAAATAGTGGGCAAACACCTCAGTATGTAGAGCATACAGTG  597

seq1  ACCTCCTGAGGTAGAGGCCTAAGGCTGGGTAAAGAAAGGCAGGAATTAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGAGGTAGAGGCCTAAGGCTGGGTAAAGAAAGGCAGGAATTAAC  647

seq1  AA  648
      ||
seq2  AA  649


seq1: chr18_7587631_7588562
seq2: B6Ng01-336N07.g_68_1013

seq1  GAATTCCATGGTGTACTTGGTCTTAGTAAGTGACTATATGGTCTTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTGTACTTGGTCTTAGTAAGTGACTATATGGTCTTGGAGG  50

seq1  TAGTTATGGTGTATTTGGTCTTAGTAAGTGACTATATGGTCTAGTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGGTGTATTTGGTCTTAGTAAGTGACTATATGGTCTAGTTTTAT  100

seq1  AATTTGGTGATTAAAACTTAACTCTGACAGGAATTCTTGTTTTTCCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTGATTAAAACTTAACTCTGACAGGAATTCTTGTTTTTCCCTTG  150

seq1  CAAACTGTAAAACTTGACCTCATACCCAGCATGAGACAGTCATGTTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTAAAACTTGACCTCATACCCAGCATGAGACAGTCATGTTGAGG  200

seq1  TTGGGGGTGGGGAGGCTCTGATTGGTCACTGCCTCATTTAATAACATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTGGGGAGGCTCTGATTGGTCACTGCCTCATTTAATAACATCCT  250

seq1  ATGCAAAAGAGGGGTGTGGGCTGAAAAAGAGAATTAACAACAGCCTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAGAGGGGTGTGGGCTGAAAAAGAGAATTAACAACAGCCTCAAG  300

seq1  TTCCCATGGGAAGTCATCTTTTACTACAGTTATTAATAACAAACTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGGGAAGTCATCTTTTACTACAGTTATTAATAACAAACTTAATT  350

seq1  GTAGGTTTCTATGTTTCTCCTCTTGGCCAGTAGCTTTGAAGTTCTAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTCTATGTTTCTCCTCTTGGCCAGTAGCTTTGAAGTTCTAATCC  400

seq1  ACAAACACTTTTTTTGCACCAGAAAATCAACCATGTCTACCTTGAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACTTTTTTTGCACCAGAAAATCAACCATGTCTACCTTGAATTAT  450

seq1  TTACAATGGAAAGCAGTTAAAAAAAACTTCAGGTATTACAGTTTCACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGGAAAGCAGTTAAAAAAAACTTCAGGTATTACAGTTTCACAAT  500

seq1  ATAAATGTTTCAAATATTTTTAAGGTTGTCCTCATCTTAAGAATGTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTTCAAATATTTTTAAGGTTGTCCTCATCTTAAGAATGTGTGA  550

seq1  AATAGTTCTATAGGGAGTGGGGAAAGGCTGGGTCCAAAAGCCAGG-AACA  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATAGTTCTATAGGGAGTGGGGAAAGGCTGGGTCCAAAAGCCAGGAAACA  600

seq1  GGTAAACGGGCTGCTGCACCCCCAACCCCTGAGTCTGACCCTGGGATCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACGGGCTGCTGCACCCCCAACCCCTGAGTCTGACCCTGGGATCCA  650

seq1  CAGTGGGA-GGAAGCAGTGCCAGACAG-TTACCC-TTCAA-CCCCCACAC  695
      |||||||| |||||||||||||||||| |||||| ||||| |||||||||
seq2  CAGTGGGAGGGAAGCAGTGCCAGACAGTTTACCCTTTCAACCCCCCACAC  700

seq1  CCACG-CTTCTGGG--TTCCAA-CCCCACGGAGAAGACGCATACATCA-T  740
      |||||  |||||||  |||||| |||||| |||||||||||| ||||| |
seq2  CCACGTTTTCTGGGGTTTCCAACCCCCACTGAGAAGACGCATCCATCATT  750

seq1  ACACACACAGAGAAATAAT-CTAT-AAAAAGGCTACAAGATGCTGCTGCA  788
      ||||||||||||||||||| |||| ||||| |||||||||||||||||||
seq2  ACACACACAGAGAAATAATCCTATAAAAAATGCTACAAGATGCTGCTGCA  800

seq1  AGGAAAGCAGATTGACGATCTGAGTTCAATCTATT-AGGCCCACAAGGCA  837
      ||||||||| | |||| |||||||||| ||||||| |||||| |||||||
seq2  AGGAAAGCA-AATGACTATCTGAGTTC-ATCTATTAAGGCCCCCAAGGCA  848

seq1  GGAG-AACAGAAACAAC-TTTAAAGGCTACTCAATAAACAAAACAGAAAG  885
      |||| |||||||||||| ||| |||||||||| || ||| |||| || ||
seq2  GGAGAAACAGAAACAACTTTTTAAGGCTACTC-ATCAACTAAACCGATAG  897

seq1  T-GGGGGGAAAACATTAAATTTCT-TGATTTTAATACAATCTGAAAAAG  932
      | ||||||||||||||| |||| | ||||||| ||||||||||||||||
seq2  TGGGGGGGAAAACATTACATTTTTCTGATTTTTATACAATCTGAAAAAG  946


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