BAC Information

Click to search

BAC

Clone NameB6Ng01-337J20
Chromosome18 (Build37)
Map Location 88,985,767 - 89,093,020
singlet/doubletdoublet
Overlap geneLOC623208, Socs6
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
Downstream geneRttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337J20.bB6Ng01-337J20.g
ACCGA122182GA122183
length1,0671,135
definitionB6Ng01-337J20.b B6Ng01-337J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,091,960 - 89,093,020)(88,985,767 - 88,986,913)
sequence
gaattcctaaggacttcactttctcaaaacataaaagttatcaggagcca
ggttctctgagtgttctctgaagttatgccttgattatgtatgtctgttg
tatctattgataaacagcatgcatacacattttaatgatttttttcaata
ttgctatatatgtgtatatatatataattctatattattttaaatacctg
cttctctttctaaaacacacattttctttcaaatttgtgataatgtagcc
cattgtaaatattttgtatattgacccttctaacaatattctcaggggtg
ggggtattgttagacagtagaaaattcactcattaactttctctccttcc
cctcatctacattcatcatcacaccagtgaacacagtggaactatcctaa
gcattacaatctgaagagctttcctgttgtcagccagagcagtaacaaac
aaatggttgcaaacagttggcttttgcaagctttctactgcaagatgcac
acagctcttaagacaaagagccaatgacacagggatgtaactgacctcct
gagtaatcttcctttgattttttttttttttctgcttcacagcatgctgc
ttcctggaagtttagggtctctctccattccaatttgctttcttttgcca
tgataaacaccatgatcaaaagaaacttgagaaggagtttatttcacttt
acatttccaggtgatagaccatgattgagggaagtcaggataagcaagaa
ctggaaacagaaaccatagaggaagagtgtttcctatctcactcgctctg
gctggtgctaggccaactttctttatgcaacccaagatcgcatgcccaga
ggtaacacacctcactgggctggaccctcccacaaccatctacaatcaag
acaattcttcacagacttgggctaaagaccagtctgattcaagtaatctg
agactcccctctttgagttcacctttgggtgtataagttgccatggccag
tagcatgaaaacactgaacaacacattagatcacccagaaaaggtctttt
gactatcacccctcatg

gaattcagtttgcagggatgagtctttgttttcgatgggcccacagaagc
cttgagatgactcgctgtctgcagatgctttgatttataggtagatctga
acatactttcccaaaggagaaggactggtactgtgcatggatcgtggaaa
taaataatgttgatggctgacagcagaaaaatcaatgaaaagaacaatgg
aagagaatttgagtgaaaagaaaatactattaaaaattatctcccaaaag
aataagtgtactaatcaatggaatttttgcttagctgaaatttcagattt
aacaagcgatctgagaatgagtaaaaaaaaaaaaaagatggcactaatta
ggtcatctatattcagatgattatatttaaaagagaacaaagaaagaaag
aaaagaaaatcaagggaggtaaaatagctcggtgggtaaagacacttgtc
actaagctgaacaacctgagattgattcctggaacccacatggtacaagg
agataattaactcccccaaattaattgtcctttgatctagatacatgtat
gaaacctcccaaacacacataagttaataagtaaattcaataaaagaaag
aaatgaagtaacacaaattttccagagcattattgcatgctgtcaatacc
tcacaatacaataaaacattagactcatattgagacaaaaactgtcatat
tagatacaatagaattgcacataatatgaattaactgtttcacatttatg
gattatataattatataaacaatagcttctttcttagaagaagcaaagct
ttccaggaaaacaatatttaattgcatgtgcagtaatataaaaatttcct
agattttcacattgaagatttttgtatcttcatttttctcctaaaaaaac
taaaaataatttatggtattttctttttatgtgttttttttatgtgatgt
tcctctagctgcaggaaacaaattattcatttccaaacatgggaaatata
ccaaaaaaaaaaagcagtcatatactgagagattgtggatgtcaaaagta
taagaaacaatacaaaataaccaatcgtatggagttccaatccatacacg
ttacctataggtactggctatgcttagaagttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89091960_89093020
seq2: B6Ng01-337J20.b_45_1111 (reverse)

seq1  CATGAGGGTGAATAGTCCAAAAGGCC-TTTCTGGGTGATCTAATGTGTTG  49
      ||||||||   ||||| |||||| || |||||||||||||||||||||||
seq2  CATGAGGGGTGATAGT-CAAAAGACCTTTTCTGGGTGATCTAATGTGTTG  49

seq1  -TCAGTG-TTTCATGCTACT-GCCATGGCAACTTATACAACCAAAGGTGA  96
       |||||| |||||||||||| |||||||||||||||||| ||||||||||
seq2  TTCAGTGTTTTCATGCTACTGGCCATGGCAACTTATACACCCAAAGGTGA  99

seq1  ACTCAAAGA-GGGAGTCTCAGATTACTTGAATCAGACTGGTCTTTAG-CC  144
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  ACTCAAAGAGGGGAGTCTCAGATTACTTGAATCAGACTGGTCTTTAGCCC  149

seq1  AAGTCTGTGAAGAATTGTCTTGATTGTAGATGGTTGTGGGAGGGTCCAGC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTGAAGAATTGTCTTGATTGTAGATGGTTGTGGGAGGGTCCAGC  199

seq1  CCAGTGAGGTGTGTTACCTCTGGGCATGCGATCTTGGGTTGCATAAAGAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGGTGTGTTACCTCTGGGCATGCGATCTTGGGTTGCATAAAGAA  249

seq1  AGTTGGCCTAGCACCAGCCAGAGCGAGTGAGATAGGAAACACTCTTCCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCTAGCACCAGCCAGAGCGAGTGAGATAGGAAACACTCTTCCTC  299

seq1  TATGGTTTCTG-TTCCAGTTCTTGCTTATCCTGACTTCCCTCAATCATGG  343
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTCTGTTTCCAGTTCTTGCTTATCCTGACTTCCCTCAATCATGG  349

seq1  TCTATCACCTGGAAATGTAAAGTGAAATAAACTCCTTCTCAAGTTTCTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCACCTGGAAATGTAAAGTGAAATAAACTCCTTCTCAAGTTTCTTT  399

seq1  TGATCATGGTGTTTATCATGGCAAAAGAAAGCAAATTGGAATGGAGAGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGGTGTTTATCATGGCAAAAGAAAGCAAATTGGAATGGAGAGAG  449

seq1  ACCCTAAACTTCCAGGAAGCAGCATGCTGTGAAGCAGAAAAAAAAAAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAACTTCCAGGAAGCAGCATGCTGTGAAGCAGAAAAAAAAAAAAA  499

seq1  ATCAAAGGAAGATTACTCAGGAGGTCAGTTACATCCCTGTGTCATTGGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGAAGATTACTCAGGAGGTCAGTTACATCCCTGTGTCATTGGCT  549

seq1  CTTTGTCTTAAGAGCTGTGTGCATCTTGCAGTAGAAAGCTTGCAAAAGCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTAAGAGCTGTGTGCATCTTGCAGTAGAAAGCTTGCAAAAGCC  599

seq1  AACTGTTTGCAACCATTTGTTTGTTACTGCTCTGGCTGACAACAGGAAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTGCAACCATTTGTTTGTTACTGCTCTGGCTGACAACAGGAAAG  649

seq1  CTCTTCAGATTGTAATGCTTAGGATAGTTCCACTGTGTTCACTGGTGTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGATTGTAATGCTTAGGATAGTTCCACTGTGTTCACTGGTGTGA  699

seq1  TGATGAATGTAGATGAGGGGAAGGAGAGAAAGTTAATGAGTGAATTTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATGTAGATGAGGGGAAGGAGAGAAAGTTAATGAGTGAATTTTCT  749

seq1  ACTGTCTAACAATACCCCCACCCCTGAGAATATTGTTAGAAGGGTCAATA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTAACAATACCCCCACCCCTGAGAATATTGTTAGAAGGGTCAATA  799

seq1  TACAAAATATTTACAATGGGCTACATTATCACAAATTTGAAAGAAAATGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATATTTACAATGGGCTACATTATCACAAATTTGAAAGAAAATGT  849

seq1  GTGTTTTAGAAAGAGAAGCAGGTATTTAAAATAATATAGAATTATATATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAGAAAGAGAAGCAGGTATTTAAAATAATATAGAATTATATATA  899

seq1  TATACACATATATAGCAATATTGAAAAAAATCATTAAAATGTGTATGCAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATATATAGCAATATTGAAAAAAATCATTAAAATGTGTATGCAT  949

seq1  GCTGTTTATCAATAGATACAACAGACATACATAATCAAGGCATAACTTCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTATCAATAGATACAACAGACATACATAATCAAGGCATAACTTCA  999

seq1  GAGAACACTCAGAGAACCTGGCTCCTGATAACTTTTATGTTTTGAGAAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACTCAGAGAACCTGGCTCCTGATAACTTTTATGTTTTGAGAAAG  1049

seq1  TGAAGTCCTTAGGAATTC  1061
      ||||||||||||||||||
seq2  TGAAGTCCTTAGGAATTC  1067


seq1: chr18_88985767_88986913
seq2: B6Ng01-337J20.g_66_1200

seq1  GAATTCAGTTTGCAGGGATGAGTCTTTGTTTTCGATGGGCCCACAGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGCAGGGATGAGTCTTTGTTTTCGATGGGCCCACAGAAGC  50

seq1  CTTGAGATGACTCGCTGTCTGCAGATGCTTTGATTTATAGGTAGATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATGACTCGCTGTCTGCAGATGCTTTGATTTATAGGTAGATCTGA  100

seq1  ACATACTTTCCCAAAGGAGAAGGACTGGTACTGTGCATGGATCGTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTTCCCAAAGGAGAAGGACTGGTACTGTGCATGGATCGTGGAAA  150

seq1  TAAATAATGTTGATGGCTGACAGCAGAAAAATCAATGAAAAGAACAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATGTTGATGGCTGACAGCAGAAAAATCAATGAAAAGAACAATGG  200

seq1  AAGAGAATTTGAGTGAAAAGAAAATACTATTAAAAATTATCTCCCAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTTGAGTGAAAAGAAAATACTATTAAAAATTATCTCCCAAAAG  250

seq1  AATAAGTGTACTAATCAATGGAATTTTTGCTTAGCTGAAATTTCAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGTACTAATCAATGGAATTTTTGCTTAGCTGAAATTTCAGATTT  300

seq1  AACAAGCGATCTGAGAATGAGTAAAAAAAAAAAAAAGATGGCACTAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCGATCTGAGAATGAGTAAAAAAAAAAAAAAGATGGCACTAATTA  350

seq1  GGTCATCTATATTCAGATGATTATATTTAAAAGAGAACAAAGAAAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTATATTCAGATGATTATATTTAAAAGAGAACAAAGAAAGAAAG  400

seq1  AAAAGAAAATCAAGGGAGGTAAAATAGCTCGGTGGGTAAAGACACTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATCAAGGGAGGTAAAATAGCTCGGTGGGTAAAGACACTTGTC  450

seq1  ACTAAGCTGAACAACCTGAGATTGATTCCTGGAACCCACATGGTACAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCTGAACAACCTGAGATTGATTCCTGGAACCCACATGGTACAAGG  500

seq1  AGATAATTAACTCCCCCAAATTAATTGTCCTTTGATCTAGATACATGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTAACTCCCCCAAATTAATTGTCCTTTGATCTAGATACATGTAT  550

seq1  GAAACCTCCCAAACACACATAAGTTAATAAGTAAATTCAATAAAAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCCCAAACACACATAAGTTAATAAGTAAATTCAATAAAAGAAAG  600

seq1  AAATGAAGTAACACAAATTTTCCAGAGCATTATTGCATGCTGTCAATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGTAACACAAATTTTCCAGAGCATTATTGCATGCTGTCAATACC  650

seq1  TCACAATACAATAAAACATTAGACTCATATTGAGACAAAAACTGTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATACAATAAAACATTAGACTCATATTGAGACAAAAACTGTCATAT  700

seq1  TAGATACAATAGAATTGCACATAATATGAATTAACTGTTTCACATTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAATAGAATTGCACATAATATGAATTAACTGTTTCACATTTATG  750

seq1  GATTATATAATTATATAAACAATAGCTTCTTTCTTAGAAGAAGCAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATAATTATATAAACAATAGCTTCTTTCTTAGAAGAAGCAAAGCT  800

seq1  TTCCAGGAAAACAATATTTAATTGCATGTGCAGTAATATAAAAATTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAAAACAATATTTAATTGCATGTGCAGTAATATAAAAATTTCCT  850

seq1  AGATTTTCACATTGAAGATTTTTGTATCTTCATTTTTCTCCTAAAAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCACATTGAAGATTTTTGTATCTTCATTTTTCTCCTAAAAAAAC  900

seq1  TAAAAATAA-TTATGGTATTTTCTTTTTATGTG-TTTTTTTATGTGATGT  948
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAAATAATTTATGGTATTTTCTTTTTATGTGTTTTTTTTATGTGATGT  950

seq1  TCCTCTTAGCTGCAGGAAACAAATTATTCATTTCCCAAAACATGGGAAAT  998
      ||||| |||||||||||||||||||||||||||||  |||||||||||| 
seq2  TCCTC-TAGCTGCAGGAAACAAATTATTCATTTCC--AAACATGGGAAA-  996

seq1  TATACCAAAAAAAAAAGCCAGTCATATACTGAGAAGAATTTGTGGATGTT  1048
      ||||||||||||||||  ||||||||||||||| |||  ||||||||| |
seq2  TATACCAAAAAAAAAAAGCAGTCATATACTGAG-AGA--TTGTGGATG-T  1042

seq1  AAAAAGTATAAGAAACCATTACAAAATAAACCAATCCTATTGAGTTCCAT  1098
       |||||||||||||| || |||||||| |||||||| ||| |||||||| 
seq2  CAAAAGTATAAGAAA-CAATACAAAAT-AACCAATCGTATGGAGTTCCAA  1090

seq1  CCCATAACCACTTACCCAATAAGTACTGTGCTATGCTTAGAAAATTCAA  1147
       |||||  ||| |  || ||| |||||| ||||||||||| || |||||
seq2  TCCATA--CACGTTACCTATAGGTACTG-GCTATGCTTAG-AAGTTCAA  1135


| Home | SequenceCutter | Blast | Download |