BAC Information

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BAC

Clone NameB6Ng01-338K05
Chromosome18 (Build37)
Map Location 79,251,664 - 79,252,808
singlet/doubletsinglet
Overlap geneSetbp1
Upstream geneCd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338K05.bB6Ng01-338K05.g
ACCGA122869GA122870
length1,1391,200
definitionB6Ng01-338K05.b B6Ng01-338K05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatagtaaaaagcaataaaagatgaagatgagattgaagctgct
catcagatgagtctaacttatagaaacattgtctcacatctaatgtattc
acaacttagtgactgacgctctgtttcaagttagaagaatgaagccatga
accaagaaatgtcagcaagtccttagcaaggatgccttgacagatagtga
gagccttttgtgttcaaatggaccaaacctgtcttgacaactggcctatt
ctccttttcgggatgatcatggtgcttaaagggggaaactttgagccgct
gtcatatagaaatctatgtgctagacatgagcctccttagaaagtctgac
ccaaaccaaaccagctatggcctcttccctcagtgacatctagaacactt
gagagagggtgagtagcataaaaacctagattgatgtttggaaacctact
aacctcacttggttttactctacataatgaggcttccacaagtgagtctt
caggaaccttttcaatagaactagcaatgttttcttctaagtcttatgcg
cctgcctctaccaaatcctctctctggataaacaaacactgagaaaatgt
actccatagacttacagacaaccctctttttacctattgaatgataagac
tcaggagtaagaagagaatataacacatttttatagtaccaagaagctaa
tcactgaaagtcagttaagagtactaggcactttccatgtgccaaaagct
ggggggaatacaaaatgttattcactttatcatccaaagagaattcctaa
tcaaacaaaggagactaacagagaaggtaaattggcaagaaaatcttgaa
tagtgggctaggaaaaagttaaccattttgccaggaatcgctgacagtac
ccataggtgctatgcagttgaaggtggagggatgggtgagctgggaagcc
caggaaggaaagggtttccattataggatgagtactggctcgacgggaaa
tgcagagggtatttaaggtcagagtgatgtaacagaagtatggagtgggc
atgaaatgtggtccaggaatgaacacgagcatcagccagtgggggagaga
aataagtcttcatagccagttccttctgaaatagaagca
gaattcagttgaagatccagacataaacccaaatggacacctgatttttt
ttaatagagaagccacaattacacagtgaaaagaggatagaattttcacc
aaatagtgctggtccaaccagatagctgtatgtagatgaatgtaagtagg
ttcatagttatcaccccatacaaacttcaactccaaatagatcaaaggtg
ttaacataagaccagatagctgaatctaatagaagagaaactggggagta
gccttgaattcattgccacaggaaaagactttctgggtagaacacaccct
taacacagacacgatgatcaacaataataaagggacctcatgaaactaaa
aggttcctacatagcaaaggacacgatcattaggacagcatggctgcctg
cagaatgaggacttttctcaactgcacactcaatagagagttaatatcca
aaatacattaagaacttaaaaaaatctatgtatcaagaaataatgtgtgt
gggccaggaaggggccaggaacctcacaggaagaccaacacagccaatta
aactgaacccttgggagctctcagagcctgagtcatcaaccaaatagcgt
gcccaggctggaccaaggcccctggtacatatatatcagatgtgcagctc
agtctacatggttgtctcccaaagactggagcagggactgtacctaaagc
tgttgctgcctgtctgtggaatccatttcccattaggactgccttatctg
acttcagtgggaaaggatgtgcctaaccctgaagagacttgatgtggcag
agttggaagatacccaggggtccatcaccatctcaaaggagaaaggggta
ggggtagggactctgtgatgtaaataaataaataaatagatcgatagatc
gatagatagatagatagatagatagatagatagatagatagatagataga
tagatagataataatcaaatgctgtttgcatcacactttaaaaaaagagc
agcatatttcgtatgtggtgcttatctccaatgtcaccctcgacttctgt
cttctgtctcaaatgttaaacatcacagtataaatgtcactgccagaaaa
gttcctctcgacacttctcttgtccagccataactgaatgatcctttttc
ttaagattactagaggtatccaatgttacaggctgagaaaatttatcttc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79251664_79252808
seq2: B6Ng01-338K05.b_45_1183

seq1  GAATTCCATAGTAAAAAGCAATAAAAGATGAAGATGAGATTGAAGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTAAAAAGCAATAAAAGATGAAGATGAGATTGAAGCTGCT  50

seq1  CATCAGATGAGTCTAACTTATAGAAACATTGTCTCACATCTAATGTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATGAGTCTAACTTATAGAAACATTGTCTCACATCTAATGTATTC  100

seq1  ACAACTTAGTGACTGACGCTCTGTTTCAAGTTAGAAGAATGAAGCCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTAGTGACTGACGCTCTGTTTCAAGTTAGAAGAATGAAGCCATGA  150

seq1  ACCAAGAAATGTCAGCAAGTCCTTAGCAAGGATGCCTTGACAGATAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAATGTCAGCAAGTCCTTAGCAAGGATGCCTTGACAGATAGTGA  200

seq1  GAGCCTTTTGTGTTCAAATGGACCAAACCTGTCTTGACAACTGGCCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTTGTGTTCAAATGGACCAAACCTGTCTTGACAACTGGCCTATT  250

seq1  CTCCTTTTCGGGATGATCATGGTGCTTAAAGGGGGAAACTTTGAGCCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCGGGATGATCATGGTGCTTAAAGGGGGAAACTTTGAGCCGCT  300

seq1  GTCATATAGAAATCTATGTGCTAGACATGAGCCTCCTTAGAAAGTCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATAGAAATCTATGTGCTAGACATGAGCCTCCTTAGAAAGTCTGAC  350

seq1  CCAAACCAAACCAGCTATGGCCTCTTCCCTCAGTGACATCTAGAACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAACCAGCTATGGCCTCTTCCCTCAGTGACATCTAGAACACTT  400

seq1  GAGAGAGGGTGAGTAGCATAAAAACCTAGATTGATGTTTGGAAACCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGTGAGTAGCATAAAAACCTAGATTGATGTTTGGAAACCTACT  450

seq1  AACCTCACTTGGTTTTACTCTACATAATGAGGCTTCCACAAGTGAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACTTGGTTTTACTCTACATAATGAGGCTTCCACAAGTGAGTCTT  500

seq1  CAGGAACCTTTTCAATAGAACTAGCAATGTTTTCTTCTAAGTCTTATGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCTTTTCAATAGAACTAGCAATGTTTTCTTCTAAGTCTTATGCG  550

seq1  CCTGCCTCTACCAAATCCTCTCTCTGGATAAACAAACACTGAGAAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTACCAAATCCTCTCTCTGGATAAACAAACACTGAGAAAATGT  600

seq1  ACTCCATAGACTTACAGACAACCCTCTTTTTACCTATTGAATGATAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATAGACTTACAGACAACCCTCTTTTTACCTATTGAATGATAAGAC  650

seq1  TCAGGAGTAAGAAGAGAATATAACACATTTTTATAGTACCAAGAAGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTAAGAAGAGAATATAACACATTTTTATAGTACCAAGAAGCTAA  700

seq1  TCACTGAAAGTCAGTTAAGAGTACTAGGCACTTTCCATGTGCCAAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAAGTCAGTTAAGAGTACTAGGCACTTTCCATGTGCCAAAAGCT  750

seq1  GGGGGGAATACAAAATGTTATTCACTTTATCATCCAAAGAGAATTCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAATACAAAATGTTATTCACTTTATCATCCAAAGAGAATTCCTAA  800

seq1  TCAAACAAAGGAGACTAACAGAGAAGGTAAATTGGCAAGAAAATCTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAAGGAGACTAACAGAGAAGGTAAATTGGCAAGAAAATCTTGAA  850

seq1  TAGTGGGCTAGGAAAAAGTTAACCATTTTGCCAGGAATCGCTGACAGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGCTAGGAAAAAGTTAACCATTTTGCCAGGAATCGCTGACAGTAC  900

seq1  CCATAGGTGCTATGCAGTTGAAGGGTGGAGGGATGGGTGAGCTGGGAAGC  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATAGGTGCTATGCAGTTGAA-GGTGGAGGGATGGGTGAGCTGGGAAGC  949

seq1  CCAGGAAGGAAAAGGGTTTTCCATTATAGGATGAGTACTGGCTCGACGGG  1000
      ||||||||||||  || |||||||||||||||||||||||||||||||||
seq2  CCAGGAAGGAAA--GGGTTTCCATTATAGGATGAGTACTGGCTCGACGGG  997

seq1  AAAATGCAGGAGGGTATTTAAGGTCAGAGTGATGTAAACAGAAGTATGGA  1050
       ||||||| |||||||||||||||||||||||||| ||||||||||||| 
seq2  -AAATGCA-GAGGGTATTTAAGGTCAGAGTGATGT-AACAGAAGTATGG-  1043

seq1  AGTGGGCATGGAAATGTGGTCAGGGAATGAACA-GAGCATTCAGCAAGTG  1099
      ||||||||| |||||||||||  |||||||||| ||||| ||||| ||||
seq2  AGTGGGCAT-GAAATGTGGTCCAGGAATGAACACGAGCA-TCAGCCAGTG  1091

seq1  GG---GAGAGATAAGTCTTCAAATAG-CAGTT-CTTCTGAAATTAGAAGC  1144
      ||   |||| ||||||||||  |||| ||||| ||||||||| |||||||
seq2  GGGGAGAGAAATAAGTCTTC--ATAGCCAGTTCCTTCTGAAA-TAGAAGC  1138

seq1  A  1145
      |
seq2  A  1139