BAC Information

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BAC

Clone NameB6Ng01-340P04
Chromosome18 (Build37)6 (Build37)
Map Location 8,715,677 - 8,716,76972,793,994 - 72,794,136
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158, EG545242
Downstream geneLOC665161, Fzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340P04.bB6Ng01-340P04.g
ACCGA124486GA124487
length1,0941,015
definitionB6Ng01-340P04.b B6Ng01-340P04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,715,677 - 8,716,769)(72,793,994 - 72,794,136)
sequence
gaattcttttcattttactttattttttataatattatttctataattgt
gctccattttgtcatgtgtattttgtgaaatagtgactatttttaaaaat
tcatctattatattttgataatttggctaaataagttgtttctactgcct
catcttggcatttttgcatgcttaggaacttggcatcctgtgacagatat
tgtgtgggctctgtatggcatcatgctttaggggctaacccctgactagt
acgaaaagtagagttataaagtataaagttcatgtgaccaggaactgcag
tccaatgtgaagtgccagcatttgtcagactgtctatctttaatggtccc
agacttccagaggaaaggcttcttggattcttgcagagattcggagatgc
ttgctacgatccctctccacaaatctccttggaatgtaattcttgtttct
tcagtggaaatgtaattcttgtttcttaatcagtgggaaaataataatct
tctaagtgtttttactcttccctttggaagtgttaaggtcagactctgtg
gggatttcagggagtcatgtaagtaaataaatgccacagcccagcatgaa
ctggtgagacaaggtgcaaggttggctgcaggaatacatataatagacag
atgcaggcaacctcctgaaagtatggctaagtgtgctggttggtcacatc
gaggcagatacattagaattgtctcaagatactgagctcatcacactgag
atttagtttgtaagcaacaggagagctggggagttttattagagttttag
aaatggaaatacatatttgagagtgaagttgaaggtgtgggaggggagga
gcgtgctgttgaaaacaaatgcagaaaggggagcacagaactatctcacc
tgctagatcccgtgtgcattggacttattcacttagtcagcatgtgcagg
ccagtgtgaggggcagaattcttattcaccaagtgttttgcccgaccaga
aaagggaagattatcaacctaagagtaacctggcaagtagactttcagct
cttccttggcagaccacttgaagacatgatgtgttggaacacta

gaattccttataaccccacagtacaaggaattatcgaactttctcaccac
actttgaaaaactggatttttaaaatgaaacagggacagctttacacccc
cccccccaccagtcaccaaaggcacgtcttgctttttttgtcttgttcgt
tttaaattttttgcaaactgaggttaaaggtcagtctgcagcagatcgcc
actggcatccagttacttacatttctcatgccatggttaaacggcaggac
ccattaactaatacgtggaatagtccagaccccatttttaatctggggaa
aaggttctgtctgtgtttttgcacaaaaagaagatggagcgcgatggctg
cctgaaagactggttcgtcaagtggacacagatcatgaatcttctaataa
gtatgattttaacctccttgatggctgaaaatcatttttagctgaaaaag
ttaatttggagcacagcctctacttccagagaatctctggcctttctgct
aattctgaaaaccagctctcccacaccaggaggccagagcctgagcttga
tcattgctaatttgcaactgaataaagtacctgggcttccatgcctttaa
tcccagcacagaggcagggatttaatgcctttaatcccaggcagaggcag
tcggatttctgagttcgaggccagcctggtctacagagtgagttccagga
cagccagggctatatagagaaaccctgtctcgaaaaaacaaacaaaacaa
aaaaacaaaacaaaacaaaacaaaaaaagtacctgggcttccaaaaagaa
gcttttatcctgttgcttttcactgtctcggctttgtttttcaagcaggt
cagtcaaatcctcagtctgatctcagctcgcatccagcaagcgggtggca
gaatttcatcaatatgaagaagcatattcaatatatatattgtggcattt
gtctgaattaggaataatgtgtgctatgagggccggttagtcaatgacgg
caaccagatttcgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_8715677_8716769
seq2: B6Ng01-340P04.b_46_1139 (reverse)

seq1  TAGTGTTCACACAC-TCATGTCTTC-AGTGTGTCTGCCAAGG-AGAGCTG  47
      ||||||||  |||| |||||||||| |||| ||||||||||| |||||||
seq2  TAGTGTTCCAACACATCATGTCTTCAAGTG-GTCTGCCAAGGAAGAGCTG  49

seq1  AAAGTCTACTTGTCAAGTTACTCTTTGGTTGATATTCTTTCCTTTTCTGG  97
      |||||||||||| || ||||||||| |||||||| |||| ||||||||||
seq2  AAAGTCTACTTGCCAGGTTACTCTTAGGTTGATAATCTTCCCTTTTCTGG  99

seq1  TCTGTGCAAAACACTTGGTG-ATTAGAATTCTGCCCCCTCACACTGGCCT  146
      || | ||||||||||||||| || ||||||||| ||||||||||||||||
seq2  TC-GGGCAAAACACTTGGTGAATAAGAATTCTG-CCCCTCACACTGGCCT  147

seq1  GCACATGCTGACTAAGTGAATAAGTCCAATGCACACGGGATCTCGCA-GT  195
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  GCACATGCTGACTAAGTGAATAAGTCCAATGCACACGGGATCTAGCAGGT  197

seq1  GAGATAGTTCTGTGCTCCCCTTTTCTGCATTTGTTTTCAACAGCACGCTC  245
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGATAGTTCTGTGCTCCCC-TTTCTGCATTTGTTTTCAACAGCACGCTC  246

seq1  CTCCCCTCCCACACCTTCAACTTCACTCTCAAATATGTATTTCCATTTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCCACACCTTCAACTTCACTCTCAAATATGTATTTCCATTTCT  296

seq1  AAAACTCTAATAAAACTCCCCAGCTCTCCTGTTGCTTACAAACTAAATCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTAATAAAACTCCCCAGCTCTCCTGTTGCTTACAAACTAAATCT  346

seq1  CAGTGTGATGAGCTCAGTATCTTGAGACAATTCTAATGTATCTGCCTCGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGATGAGCTCAGTATCTTGAGACAATTCTAATGTATCTGCCTCGA  396

seq1  TGTGACCAACCAGCACACTTAGCCATACTTTCAGGAGGTTGCCTGCATCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAACCAGCACACTTAGCCATACTTTCAGGAGGTTGCCTGCATCT  446

seq1  GTCTATTATATGTATTCCTGCAGCCAACCTTGCACCTTGTCTCACCAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTATATGTATTCCTGCAGCCAACCTTGCACCTTGTCTCACCAGTT  496

seq1  CATGCTGGGCTGTGGCATTTATTTACTTACATGACTCCCTGAAATCCCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGGCTGTGGCATTTATTTACTTACATGACTCCCTGAAATCCCCA  546

seq1  CAGAGTCTGACCTTAACACTTCCAAAGGGAAGAGTAAAAACACTTAGAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTGACCTTAACACTTCCAAAGGGAAGAGTAAAAACACTTAGAAG  596

seq1  ATTATTATTTTCCCACTGATTAAGAAACAAGAATTACATTTCCACTGAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTTTCCCACTGATTAAGAAACAAGAATTACATTTCCACTGAAG  646

seq1  AAACAAGAATTACATTCCAAGGAGATTTGTGGAGAGGGATCGTAGCAAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAATTACATTCCAAGGAGATTTGTGGAGAGGGATCGTAGCAAGC  696

seq1  ATCTCCGAATCTCTGCAAGAATCCAAGAAGCCTTTCCTCTGGAAGTCTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCGAATCTCTGCAAGAATCCAAGAAGCCTTTCCTCTGGAAGTCTGG  746

seq1  GACCATTAAAGATAGACAGTCTGACAAATGCTGGCACTTCACATTGGACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTAAAGATAGACAGTCTGACAAATGCTGGCACTTCACATTGGACT  796

seq1  GCAGTTCCTGGTCACATGAACTTTATACTTTATAACTCTACTTTTCGTAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCCTGGTCACATGAACTTTATACTTTATAACTCTACTTTTCGTAC  846

seq1  TAGTCAGGGGTTAGCCCCTAAAGCATGATGCCATACAGAGCCCACACAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGGGTTAGCCCCTAAAGCATGATGCCATACAGAGCCCACACAAT  896

seq1  ATCTGTCACAGGATGCCAAGTTCCTAAGCATGCAAAAATGCCAAGATGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCACAGGATGCCAAGTTCCTAAGCATGCAAAAATGCCAAGATGAG  946

seq1  GCAGTAGAAACAACTTATTTAGCCAAATTATCAAAATATAATAGATGAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGAAACAACTTATTTAGCCAAATTATCAAAATATAATAGATGAAT  996

seq1  TTTTAAAAATAGTCACTATTTCACAAAATACACATGACAAAATGGAGCAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATAGTCACTATTTCACAAAATACACATGACAAAATGGAGCAC  1046

seq1  AATTATAGAAATAATATTATAAAAAATAAAGTAAAATGAAAAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGAAATAATATTATAAAAAATAAAGTAAAATGAAAAGAATTC  1094


seq1: chr6_72793994_72794136
seq2: B6Ng01-340P04.g_695_828

seq1  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  50
      ||||||||||||          |||||||||||| |||||||||||||||
seq2  GCCTTTAATCCC----------AGGCAGAGGCAGTCGGATTTCTGAGTTC  40

seq1  GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTACACA  100
      ||||||||||||||||||| |||||||||||||||||||| ||||| | |
seq2  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATATA  90

seq1  GAGAAACCCTGTCTTG-AAAAACAAACAAACAAACAAAAAAAAA  143
      |||||||||||||| | |||||||||||||  || |||| ||||
seq2  GAGAAACCCTGTCTCGAAAAAACAAACAAAACAAAAAAACAAAA  134


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