BAC Information

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BAC

Clone NameB6Ng01-342E02
Chromosome18 (Build37)
Map Location 24,891,382 - 24,892,530
singlet/doubletsinglet
Overlap geneFhod3
Upstream geneMapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos
Downstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342E02.bB6Ng01-342E02.g
ACCGA125395GA125396
length1,1391,204
definitionB6Ng01-342E02.b B6Ng01-342E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaccctgttgcagcagaataagaaaagaagatatgagtggaga
gaaagaggaaagccagcatcctcacttttgttcctttagtctgtgacatt
ctgcatattaccagcatcttctcttggccatcaggtatctcccaaggaca
tagcagaaatggctctctggggcgtcccagtctactgtccctcgggatga
ggatacagccatcattacataatttcaacatatctgaaaaacttcttgga
tttcatcaccatctcccatctcacatttctgatctccatttggcaaaaat
acaagagattccatacctccagcacccatctcctgtatccttatgtaatg
tttaagcagaacacatttagaaaagtgccagtcagtgaatttccagtgag
cacatccaagtcgccagctcagatagaagaataaaggtcacttgtggtcc
agaagtctccaccggtccctcctcactcacactttcctcaccacagatag
atctctaaggctgtaagtcagtgttcctgtcttaagcttacaacgtatag
ctttcttcactcgatcatacgtctatgagatgcatctatgttccatgaat
gtacagtgcatccactttcagcattattatattctttcaattgaatacac
agagttaaccatgatcattgaaaactgctcttagctgttttataccacat
agtcagctaccatgagtacttgtggcgtctccagggcatatatgtctctt
aagtctatgtttagtcatagaatcactaagtcctagacttagtgacaatg
catctgtgcctgcttcataactgctaagaattttaaattttcagcatatg
agtctcccttttgtcctacatctttgccaagccttgctgctagcacactc
ttgagatctatttacttatgttggtgcactggtgtttgcctgcatgtatg
tctaatgaaagtgccagatgccctagattggagctacagtcaggtgtgag
ctgccatgtgggtgctggaattgaactaggtctctgaaagaacagccata
ctcttaccgctgacggtctctctgggcggatttaactttactatccagaa
tggcatgtgatagtaacctcaatgggtgcactgcattcc
gaattccagatctgccaacagcagagaccaacactgagccccagacatgg
caccattccttgaggtgaccagccagcaacctggtgctaagttgactaca
ttggaccacttcctccgtggaaaggacaatgttttgttcttactggagta
gatacttattctggttatggacttgcctttcctacaaatgcttctgccaa
aaccaccatctgtggactcacagaatgccttatccattgtcacggtattc
cacacagcattgtttctgaccaaggaactcatttcacagccagagaagtg
cgacagtgggcctaccatcatggaattcactagtctacgatgatgttttc
catcctcccgaagcaactggtctggtagaaagatggaatggccttttgaa
gctcagttacagtgccaattaggtggcagcagcatggagggctggggcag
agttcttcagaaggcagtatatgcttttaatcagcgtccgatatatgata
cagctctcccacaaccaggatccatgggtccgggaatcaaggggtggaaa
agggaaatagttccactctctatcactcctagtgaccctctaggaaaatt
tttgcttcctgtccctacaaccctagattctgctggcctagaagtttttg
gttccagagggtagagtgctcctaccaggagccacaacaaacattccatt
gaactggaagctcagaattctccctggtcattttgggcttccaatgccct
taaaccaacagggtaagagaggaataacagttaggaggggtgatagatcc
agattaccatggggacattggattgcctctccacaatggaggtgagcagg
attatgtctggagtgcaggagagcccttaggacatctctcagtactacct
tgtcctatgattaaaatcattgggaaaaacaacatcctaatccaagcaga
tgacaagaatgcagacccatcagatgaggatgggtcactcctccaggaag
agccaagacctactgaggtgcttgacgaggagaaatacagtgggttatag
aggagtagttgtaaataccagcgagcacatacctgtacagaagcagagtt
tataagtaatagaatgcttcgataattgtaagaacctgtccagcttgaag
tggctaccgttaaggacactggactgtctctttacagacgactcctggga
gata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24891382_24892530
seq2: B6Ng01-342E02.b_49_1187 (reverse)

seq1  GGAATGCAAGTGCAAACCATTGA-GTTACTATCACATGCCA-TCTGAATA  48
      ||||||| ||||| | ||||||| ||||||||||||||||| |||| |||
seq2  GGAATGC-AGTGC-ACCCATTGAGGTTACTATCACATGCCATTCTGGATA  48

seq1  GTTAAAGGTTAAAATCCGGCCAGAGAGACGGTTCAGCGGTTAAGAGTATT  98
      | |||||  | ||||||| |||||||||| | ||||||| |||||||| |
seq2  G-TAAAG--TTAAATCCGCCCAGAGAGACCG-TCAGCGG-TAAGAGTA-T  92

seq1  GGCTGTTCTTTCAGAGGACCTAGGTTCAATTTCCAGCACCCACATGGCAG  148
      ||||||||||||||| |||||| |||||| ||||||||||||||||||||
seq2  GGCTGTTCTTTCAGA-GACCTA-GTTCAA-TTCCAGCACCCACATGGCAG  139

seq1  CTCACACCTGACTGTAGCTCCAATTCTAGGGCATCTGGCACTTTCA-TAG  197
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  CTCACACCTGACTGTAGCTCCAA-TCTAGGGCATCTGGCACTTTCATTAG  188

seq1  ACATACATGCAGGCAAAACACCAGTGCACCAACATAAGTAAATAGATCTC  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACATACATGCAGGC-AAACACCAGTGCACCAACATAAGTAAATAGATCTC  237

seq1  AAGAGTGTGCTAGCAGCAAGGCTTGGCAAAGATGTAGGACAAAAGGGAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGCTAGCAGCAAGGCTTGGCAAAGATGTAGGACAAAAGGGAGA  287

seq1  CTCATATGCTGAAAATTTAAAATTCTTAGCAGTTATGAAGCAGGCACAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGCTGAAAATTTAAAATTCTTAGCAGTTATGAAGCAGGCACAGA  337

seq1  TGCATTGTCACTAAGTCTAGGACTTAGTGATTCTATGACTAAACATAGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTCACTAAGTCTAGGACTTAGTGATTCTATGACTAAACATAGAC  387

seq1  TTAAGAGACATATATGCCCTGGAGACGCCACAAGTACTCATGGTAGCTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGACATATATGCCCTGGAGACGCCACAAGTACTCATGGTAGCTGA  437

seq1  CTATGTGGTATAAAACAGCTAAGAGCAGTTTTCAATGATCATGGTTAACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGTATAAAACAGCTAAGAGCAGTTTTCAATGATCATGGTTAACT  487

seq1  CTGTGTATTCAATTGAAAGAATATAATAATGCTGAAAGTGGATGCACTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTCAATTGAAAGAATATAATAATGCTGAAAGTGGATGCACTGT  537

seq1  ACATTCATGGAACATAGATGCATCTCATAGACGTATGATCGAGTGAAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATGGAACATAGATGCATCTCATAGACGTATGATCGAGTGAAGAA  587

seq1  AGCTATACGTTGTAAGCTTAAGACAGGAACACTGACTTACAGCCTTAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATACGTTGTAAGCTTAAGACAGGAACACTGACTTACAGCCTTAGAG  637

seq1  ATCTATCTGTGGTGAGGAAAGTGTGAGTGAGGAGGGACCGGTGGAGACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTGTGGTGAGGAAAGTGTGAGTGAGGAGGGACCGGTGGAGACTT  687

seq1  CTGGACCACAAGTGACCTTTATTCTTCTATCTGAGCTGGCGACTTGGATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCACAAGTGACCTTTATTCTTCTATCTGAGCTGGCGACTTGGATG  737

seq1  TGCTCACTGGAAATTCACTGACTGGCACTTTTCTAAATGTGTTCTGCTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTGGAAATTCACTGACTGGCACTTTTCTAAATGTGTTCTGCTTA  787

seq1  AACATTACATAAGGATACAGGAGATGGGTGCTGGAGGTATGGAATCTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACATAAGGATACAGGAGATGGGTGCTGGAGGTATGGAATCTCTT  837

seq1  GTATTTTTGCCAAATGGAGATCAGAAATGTGAGATGGGAGATGGTGATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTGCCAAATGGAGATCAGAAATGTGAGATGGGAGATGGTGATGA  887

seq1  AATCCAAGAAGTTTTTCAGATATGTTGAAATTATGTAATGATGGCTGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGAAGTTTTTCAGATATGTTGAAATTATGTAATGATGGCTGTAT  937

seq1  CCTCATCCCGAGGGACAGTAGACTGGGACGCCCCAGAGAGCCATTTCTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCCGAGGGACAGTAGACTGGGACGCCCCAGAGAGCCATTTCTGC  987

seq1  TATGTCCTTGGGAGATACCTGATGGCCAAGAGAAGATGCTGGTAATATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTTGGGAGATACCTGATGGCCAAGAGAAGATGCTGGTAATATGC  1037

seq1  AGAATGTCACAGACTAAAGGAACAAAAGTGAGGATGCTGGCTTTCCTCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCACAGACTAAAGGAACAAAAGTGAGGATGCTGGCTTTCCTCTT  1087

seq1  TCTCTCCACTCATATCTTCTTTTCTTATTCTGCTGCAACAGGGTCAGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACTCATATCTTCTTTTCTTATTCTGCTGCAACAGGGTCAGAAT  1137

seq1  TC  1149
      ||
seq2  TC  1139