BAC Information

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BAC

Clone NameB6Ng01-342H18
Chromosome18 (Build37)
Map Location 41,971,461 - 41,972,625
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677182, LOC100041988
Downstream geneLOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342H18.bB6Ng01-342H18.g
ACCGA125554GA125555
length1,1491,148
definitionB6Ng01-342H18.b B6Ng01-342H18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaatggctaagaagtacctaaaggaatg
ttcaacatccatagtcatcagggaaatggaaatcaaaacaaccctgatat
tctatctcataccattcagaatggctaagatgaaaaactcatgtgacagc
agatgctggcaaggaagtggagaaagaaaaacactcctccattactggtg
ggattgtaagctggtacaactactctggaaatcagtttggtggttcctca
gaaaattggactacctgatgacccagcaataccactcctggacatatacc
cagaagatgttccaacatgtaatgaggacacatgctccactatgttcata
gcagcactatttagaatagccagaagctggaaagaacccagatatccctc
aacagaggaatggatacagaaaatgtggtacattacacaatggagtacta
ctcagtattcaaaacaatgaatttatgaaattttcaggcaaaatggatgg
aactggaaaatatcttcctgagtgaggtaacctaaccacaaaagaataca
catggtatacactcactgataggtagatattagctcaggagctcagaata
cccaagatacaattcacagaccacttgaacctcaagaaggaagaccaaag
tgtggatgctttggtccttcttaaaagggggatcaaaatacccatgtgta
ctggctggtttatgtgttgacataggctggagttatcacagagaaaggag
ctttagttgagaaaatgcctccatgaggaaatgcctacagctgtaaggca
ttttctcagttagtgatgaagtgggagggcccattgtgggtgatgccatc
cctgggatggtaatattgggttctataagagagtaggctgaacaaaccaa
gggaagcaaaccagtaagtaacatccctccatggcctctgcaatagctcc
tgcttcctgacctgcttagttccagttccttatgtcctttggtgatgaac
agcacatggaagtgtaagctgaataaacccctttctcacacttgcttctt
ggtcattgatgttgctaggaatagaaacctgactaagacaccatagagga
gtgacagagaacatgtgtgtgaagaaaagaactaagggaagggagattc
gaattcacctgtgacccaggaaataaagtctcaccagacactgaatcccc
cagtgccctgatcttgggcttcatggggtatagagccacaaaccaaacca
aaataaaacaaacaaacaaacaaacaaacaaataaacacatcctgatgta
gattaggtaaatctatgacattttgctatagcaactcaaattgaccaaga
taattgtaatgatatgtatctttcagatatttttgtgtttatttgcatta
tatcttttcttgtacctcatgagattcaaaatattaggggatatacctgc
ttttgatttcatctaaaagtgaaaaatacatgaagaagaaaaataccatt
agtgaggggtgtagacattgtgaatgtagcagaagtttggcaatgaccta
tttggtgggcactgaaaatgtccaacatatcacaggttcttaaagaaact
agattgtatgaatgagcaaatgagatatagtatatggtaccaaaatctaa
actttctctaagataatttaatcatagaaagatatgttatgaagctggga
agaagacctgaatgctatttttagtttataataatactcaaagtcttgaa
tctatatacttttcattgctttgcaagccatagcatctgcaaaatgattt
tttatgtgtgtgtatgtttgaggggcattgggagactcacaggtctccta
tgtgatctttgaagtaagtaggctgcaaatttttagtgattttattttgg
aatgtcagataacaggcagctgaaattgaaacagcttcaaatgtcaagca
atcaaattttcaagcattagatgcattaaaaccttaaaggcacagtctta
actttccagtatccctgtaaatttgaacagtcccggcagaaacaatccta
cccaagaagctgttcttatctgaattacccacatttctttgatttcctcc
aaatcctcagttttccagatacagcaaagagcagaggtttgaaaactact
tcttttacatacactgttctagtaaatagctcagattttctggctatctg
ctgtgtcagtactcagctctttctgcactgctaggaaacagttctgtgca
gaacttgtgattggtcaataacctatgttattacgagactggctgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41971461_41972625
seq2: B6Ng01-342H18.g_68_1215 (reverse)

seq1  CTGCAGCCAGTCCTCTGGGTTATTTATACATAAAGTTTTATTGGAACAAA  50
      ||||||||||| |||   || ||    |||||     ||||||  || ||
seq2  CTGCAGCCAGT-CTC---GTAAT---AACATA---GGTTATTG--ACCAA  38

seq1  CCACAAG-TCTGCACAGAACTGTTTCCCTTAGGCAGTGCAG-AAGAGCTG  98
       |||||| |||||||||||||||||||  || ||||||||| ||||||||
seq2  TCACAAGTTCTGCACAGAACTGTTTCC--TA-GCAGTGCAGAAAGAGCTG  85

seq1  AGTACTTGGAACACCAAGCAGATAGCCAGAAAATCTGAGCTATTTACTAG  148
      ||||||    ||||  ||||||||||||||||||||||||||||||||||
seq2  AGTACT---GACAC--AGCAGATAGCCAGAAAATCTGAGCTATTTACTAG  130

seq1  AAACAGTGTATGTAAAAGAAGTAGTTTTCAAACCTCTGCTCTTTGCTGTT  198
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -AACAGTGTATGTAAAAGAAGTAGTTTTCAAACCTCTGCTCTTTGCTG-T  178

seq1  ATCTGGAAAACTGAGGATTTGGAGGAAATCAA--GAATGTGGGTAATTCA  246
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  ATCTGGAAAACTGAGGATTTGGAGGAAATCAAAGAAATGTGGGTAATTCA  228

seq1  GATAAGAACAGCTTCTTGGGTAGGATTGTTTCTGCCGGGACTGTTCAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAACAGCTTCTTGGGTAGGATTGTTTCTGCCGGGACTGTTCAAAT  278

seq1  TTACAGGGATACTGGAAAGTTAAGACTGTGCCTTTAAGG-TTTAATGCAT  345
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTACAGGGATACTGGAAAGTTAAGACTGTGCCTTTAAGGTTTTAATGCAT  328

seq1  CTAATGCTTGAAAATTTGATTGCTTGACATTTGAAGCTGTTTCAATTTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTTGAAAATTTGATTGCTTGACATTTGAAGCTGTTTCAATTTCA  378

seq1  GCTGCCTGTTATCTGACATTCCAAAATAAAATCACTAAAAATTTGCAGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGTTATCTGACATTCCAAAATAAAATCACTAAAAATTTGCAGCC  428

seq1  TACTTACTTCAAAGATCACATAGGAGACCTGTGAGTCTCCCAATGCCCCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTTCAAAGATCACATAGGAGACCTGTGAGTCTCCCAATGCCCCT  478

seq1  CAAACATACACACACATAAAAAATCATTTTGCAGATGCTATGGCTTGCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACACACACATAAAAAATCATTTTGCAGATGCTATGGCTTGCAA  528

seq1  AGCAATGAAAAGTATATAGATTCAAGACTTTGAGTATTATTATAAACTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAAAAGTATATAGATTCAAGACTTTGAGTATTATTATAAACTAA  578

seq1  AAATAGCATTCAGGTCTTCTTCCCAGCTTCATAACATATCTTTCTATGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCATTCAGGTCTTCTTCCCAGCTTCATAACATATCTTTCTATGAT  628

seq1  TAAATTATCTTAGAGAAAGTTTAGATTTTGGTACCATATACTATATCTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCTTAGAGAAAGTTTAGATTTTGGTACCATATACTATATCTCA  678

seq1  TTTGCTCATTCATACAATCTAGTTTCTTTAAGAACCTGTGATATGTTGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCATTCATACAATCTAGTTTCTTTAAGAACCTGTGATATGTTGGA  728

seq1  CATTTTCAGTGCCCACCAAATAGGTCATTGCCAAACTTCTGCTACATTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGTGCCCACCAAATAGGTCATTGCCAAACTTCTGCTACATTCA  778

seq1  CAATGTCTACACCCCTCACTAATGGTATTTTTCTTCTTCATGTATTTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTACACCCCTCACTAATGGTATTTTTCTTCTTCATGTATTTTTC  828

seq1  ACTTTTAGATGAAATCAAAAGCAGGTATATCCCCTAATATTTTGAATCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGATGAAATCAAAAGCAGGTATATCCCCTAATATTTTGAATCTC  878

seq1  ATGAGGTACAAGAAAAGATATAATGCAAATAAACACAAAAATATCTGAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTACAAGAAAAGATATAATGCAAATAAACACAAAAATATCTGAAA  928

seq1  GATACATATCATTACAATTATCTTGGTCAATTTGAGTTGCTATAGCAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATATCATTACAATTATCTTGGTCAATTTGAGTTGCTATAGCAAAA  978

seq1  TGTCATAGATTTACCTAATCTACATCAGGATGTGTTTATTTGTTTGTTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGATTTACCTAATCTACATCAGGATGTGTTTATTTGTTTGTTTG  1028

seq1  TTTGTTTGTTTGTTTTATTTTGGTTTGGTTTGTGGCTCTATACCCCATGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTATTTTGGTTTGGTTTGTGGCTCTATACCCCATGA  1078

seq1  AGCCCAAGATCAGGGCACTGGGGGATTCAGTGTCTGGTGAGACTTTATTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGATCAGGGCACTGGGGGATTCAGTGTCTGGTGAGACTTTATTT  1128

seq1  CCTGGGTCACAGGTGAATTC  1165
      ||||||||||||||||||||
seq2  CCTGGGTCACAGGTGAATTC  1148