BAC Information

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BAC

Clone NameB6Ng01-343M22
Chromosome18 (Build37)
Map Location 29,673,252 - 29,824,284
singlet/doubletdoublet
Overlap geneLOC666073
Upstream geneBC051408, LOC100040930, 4930578E11Rik
Downstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343M22.bB6Ng01-343M22.g
ACCGA126485GA126486
length1,1351,114
definitionB6Ng01-343M22.b B6Ng01-343M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,823,136 - 29,824,284)(29,673,252 - 29,674,360)
sequence
gaattctggatacatcatgaggggaaactctgtaggcatgagaagcattt
agttcaaacagactctcagaagacaggtgagtcctttcttgtggagtcca
tgaacaggtgagaagaattttttcctctgatgtctgattctttaggctgc
atatttcccaatgaaatttaatattcctgaaaacagaaccccaagaacct
tttgtcaaaaacaccaaagctctaagaaatttcagcaaacaaggaatgtc
gtagatgttaacattttggttgggtttttctaaatcgtaaatatttgtat
atgttctttaggttttattttattgttttggaaaagctgctgaaattagc
ttgtctctaagaaaatcctacatggctactttgctctttgcccaacactc
tgagtcactatgctctggctgagaaccagtgtgacatctaactcttatcc
agtctcttaggagctgtatcttccccttttcactctctgcctccactgaa
cgctgtgaaaactatggagtcttacaatttttaccaaagtaaacattaca
attttgcataaacattattttactcacgcctctgctcaggctgttactga
agagatacatgttctaactgacaggtgaggactcaaacgtcttcagggat
gctcagcatcatcttcaaggattctgtcaatgccaataagccaaccacat
aaataaagcttccccctagcttggatgagatgtacttgactctatgatac
ttttacctctcccttcaggaagccatttcgagagagtttttattgttgct
gttgattttgcttgtttgtttgcaacatggtcccatgaagctcaagctga
atttaaattccatacatatttaaaggctgggtttggaatcctgctttcct
ctgcctccatcagtaagtggtgagttgttatttactttagcctcacccaa
cacagagaagaggcctatggctgccttgccagttaaaaaaacaaaatgga
aagagcaactggacaaaagctgctgatggcactatgtaatagtaacaata
atattgtttcacaaaactacaaccctttagtacagagcacagatggaaac
ttcagttctcagaagctggattcatgaatatgcta

gaattccttaaagggtgcaatatgtagttactagttaaggtaacctaact
gctgtggaaagaagcagaaaaactgtaggaaacaatctgtggtggtaaac
gtacagctctgacaaacttctgaacaagaaccaaagagactgcaaatgaa
agtgttcaaatggaaagcatctttgcccttcatttctacctttcttcggg
gtgagaaatgatggcaggcaggcctggatacgttgctggtaggccaggag
gagaagtgggcaggctttaagaccgttagcatatttcagttacctgggac
ttaaaggtcagaggagatttttccattgacacagacatcggcagaaatct
ttagtagcaggtagtagattttggaaacaagatgaataagaaaacagtag
gcaagtgtgagcatatgaaaatcaatctctattgtgtgatgcctcgcatc
tccatgcatgatatgttccaacaaaaatcagagagtttgtctcatttcct
ccagctttaaatgccttgaatattagcctgcagagagtaagaaactggat
atttgcctgtaaaaatttgggcagaaattgacttaggaatatagtgatca
tattgactaatccgaacactagagtaattaagatatttttccttcataaa
taaacagagcagcctctaattctttttattatttagttattcgtatgtat
aagggaaaggaacatggatgggtaggtgtattgggtatgttcagatgcag
gagtacgcacagtcatctcaaagtcagaggtcaatagcagttgtcttgct
tgatcactctccatcttatttatttttaaagatacgtgcttgcacaaatt
ttgcagctcattgatttaactaggctggcagggttggtgagctctgaaag
tctttcctgtgtgcattgcttagtgctcttcagcactgagcaacaggcgt
gcactgttgtatctcattttatattggttcttgtaatctggactcacgta
ctaatgctgggtataactgggggagctactaatggaaacttccagcccca
cctttcagctttctggagttttcagaagaatgcaatggatttataatatc
ctatagaggtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29823136_29824284
seq2: B6Ng01-343M22.b_46_1180 (reverse)

seq1  TAGCATATTCATTGAATCCCAGCTTCCTGGAGAAACTGAAGTTTCCATCT  50
      ||||||||||| ||||| ||||||||   ||| |||||||||||||||||
seq2  TAGCATATTCA-TGAAT-CCAGCTTC--TGAG-AACTGAAGTTTCCATCT  45

seq1  GGTTGCTCTGTTACTAAAGGGTTTGTAAGTTTTGTGAAACAATAATTATT  100
      |  ||||||| |||||||||| |||| |||||||||||||||| ||||||
seq2  G--TGCTCTG-TACTAAAGGG-TTGT-AGTTTTGTGAAACAAT-ATTATT  89

seq1  GTTTACTAATTACATAGTGCCATCAGCAGCTTTTGTCCAGTTGCCTCTTT  150
      | ||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  G-TTACT-ATTACATAGTGCCATCAGCAGCTTTTGTCCAGTTG-CTCTTT  136

seq1  CCATTTTGTTTTTTTAACCTGGCAAGGCAGCCATAGGCCTCTTCTCTGTG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATTTTGTTTTTTTAA-CTGGCAAGGCAGCCATAGGCCTCTTCTCTGTG  185

seq1  TTGGGTGAGGCTAAAGTAAATAACAACTCACCACTTACTGATGGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGAGGCTAAAGTAAATAACAACTCACCACTTACTGATGGAGGCAG  235

seq1  AGGAAAGCAGGATTCCAAACCCAGCC-TTAAATATGTATGGAATTTAAAT  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGAAAGCAGGATTCCAAACCCAGCCTTTAAATATGTATGGAATTTAAAT  285

seq1  TCAGCTTGAGCTTCATGGGACCATGTTGCAAACAAACAAGCAAAATCAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGAGCTTCATGGGACCATGTTGCAAACAAACAAGCAAAATCAAC  335

seq1  AGCAACAATAAAAACTCTCTCGAAATGGCTTCCTGAAGGGAGAGGTAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAATAAAAACTCTCTCGAAATGGCTTCCTGAAGGGAGAGGTAAAA  385

seq1  GTATCATAGAGTCAAGTACATCTCATCCAAGCTAGGGGGAAGCTTTATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATAGAGTCAAGTACATCTCATCCAAGCTAGGGGGAAGCTTTATTT  435

seq1  ATGTGGTTGGCTTATTGGCATTGACAGAATCCTTGAAGATGATGCTGAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGGCTTATTGGCATTGACAGAATCCTTGAAGATGATGCTGAGC  485

seq1  ATCCCTGAAGACGTTTGAGTCCTCACCTGTCAGTTAGAACATGTATCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAAGACGTTTGAGTCCTCACCTGTCAGTTAGAACATGTATCTCT  535

seq1  TCAGTAACAGCCTGAGCAGAGGCGTGAGTAAAATAATGTTTATGCAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACAGCCTGAGCAGAGGCGTGAGTAAAATAATGTTTATGCAAAAT  585

seq1  TGTAATGTTTACTTTGGTAAAAATTGTAAGACTCCATAGTTTTCACAGCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTTTACTTTGGTAAAAATTGTAAGACTCCATAGTTTTCACAGCG  635

seq1  TTCAGTGGAGGCAGAGAGTGAAAAGGGGAAGATACAGCTCCTAAGAGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGAGGCAGAGAGTGAAAAGGGGAAGATACAGCTCCTAAGAGACT  685

seq1  GGATAAGAGTTAGATGTCACACTGGTTCTCAGCCAGAGCATAGTGACTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGAGTTAGATGTCACACTGGTTCTCAGCCAGAGCATAGTGACTCA  735

seq1  GAGTGTTGGGCAAAGAGCAAAGTAGCCATGTAGGATTTTCTTAGAGACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGGGCAAAGAGCAAAGTAGCCATGTAGGATTTTCTTAGAGACAA  785

seq1  GCTAATTTCAGCAGCTTTTCCAAAACAATAAAATAAAACCTAAAGAACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTCAGCAGCTTTTCCAAAACAATAAAATAAAACCTAAAGAACAT  835

seq1  ATACAAATATTTACGATTTAGAAAAACCCAACCAAAATGTTAACATCTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATATTTACGATTTAGAAAAACCCAACCAAAATGTTAACATCTAC  885

seq1  GACATTCCTTGTTTGCTGAAATTTCTTAGAGCTTTGGTGTTTTTGACAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCCTTGTTTGCTGAAATTTCTTAGAGCTTTGGTGTTTTTGACAAA  935

seq1  AGGTTCTTGGGGTTCTGTTTTCAGGAATATTAAATTTCATTGGGAAATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTGGGGTTCTGTTTTCAGGAATATTAAATTTCATTGGGAAATAT  985

seq1  GCAGCCTAAAGAATCAGACATCAGAGGAAAAAATTCTTCTCACCTGTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAAAGAATCAGACATCAGAGGAAAAAATTCTTCTCACCTGTTCA  1035

seq1  TGGACTCCACAAGAAAGGACTCACCTGTCTTCTGAGAGTCTGTTTGAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCCACAAGAAAGGACTCACCTGTCTTCTGAGAGTCTGTTTGAACT  1085

seq1  AAATGCTTCTCATGCCTACAGAGTTTCCCCTCATGATGTATCCAGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTCTCATGCCTACAGAGTTTCCCCTCATGATGTATCCAGAATTC  1135


seq1: chr18_29673252_29674360
seq2: B6Ng01-343M22.g_64_1177

seq1  GAATTCCTTAAAGGGTGCAATATGTAGTTACTAGTTAAGGTAACCTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAGGGTGCAATATGTAGTTACTAGTTAAGGTAACCTAACT  50

seq1  GCTGTGGAAAGAAGCAGAAAAACTGTAGGAAACAATCTGTGGTGGTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGAAAGAAGCAGAAAAACTGTAGGAAACAATCTGTGGTGGTAAAC  100

seq1  GTACAGCTCTGACAAACTTCTGAACAAGAACCAAAGAGACTGCAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTCTGACAAACTTCTGAACAAGAACCAAAGAGACTGCAAATGAA  150

seq1  AGTGTTCAAATGGAAAGCATCTTTGCCCTTCATTTCTACCTTTCTTCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAAATGGAAAGCATCTTTGCCCTTCATTTCTACCTTTCTTCGGG  200

seq1  GTGAGAAATGATGGCAGGCAGGCCTGGATACGTTGCTGGTAGGCCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAATGATGGCAGGCAGGCCTGGATACGTTGCTGGTAGGCCAGGAG  250

seq1  GAGAAGTGGGCAGGCTTTAAGACCGTTAGCATATTTCAGTTACCTGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGGGCAGGCTTTAAGACCGTTAGCATATTTCAGTTACCTGGGAC  300

seq1  TTAAAGGTCAGAGGAGATTTTTCCATTGACACAGACATCGGCAGAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTCAGAGGAGATTTTTCCATTGACACAGACATCGGCAGAAATCT  350

seq1  TTAGTAGCAGGTAGTAGATTTTGGAAACAAGATGAATAAGAAAACAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGCAGGTAGTAGATTTTGGAAACAAGATGAATAAGAAAACAGTAG  400

seq1  GCAAGTGTGAGCATATGAAAATCAATCTCTATTGTGTGATGCCTCGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTGAGCATATGAAAATCAATCTCTATTGTGTGATGCCTCGCATC  450

seq1  TCCATGCATGATATGTTCCAACAAAAATCAGAGAGTTTGTCTCATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCATGATATGTTCCAACAAAAATCAGAGAGTTTGTCTCATTTCCT  500

seq1  CCAGCTTTAAATGCCTTGAATATTAGCCTGCAGAGAGTAAGAAACTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTAAATGCCTTGAATATTAGCCTGCAGAGAGTAAGAAACTGGAT  550

seq1  ATTTGCCTGTAAAAATTTGGGCAGAAATTGACTTAGGAATATAGTGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTGTAAAAATTTGGGCAGAAATTGACTTAGGAATATAGTGATCA  600

seq1  TATTGACTAATCCGAACACTAGAGTAATTAAGATATTTTTCCTTCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTAATCCGAACACTAGAGTAATTAAGATATTTTTCCTTCATAAA  650

seq1  TAAACAGAGCAGCCTCTAATTCTTTTTATTATTTAGTTATTCGTATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAGCAGCCTCTAATTCTTTTTATTATTTAGTTATTCGTATGTAT  700

seq1  AAGGGAAAGGAACATGGATGGGTAGGTGTATTGGGTATGTTCAGATGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAGGAACATGGATGGGTAGGTGTATTGGGTATGTTCAGATGCAG  750

seq1  GAGTACGCACAGTCATCTCAAAGTCAGAGGTCAATAGCAGTTGTCTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACGCACAGTCATCTCAAAGTCAGAGGTCAATAGCAGTTGTCTTGCT  800

seq1  TGATCACTCTCCATCTTATTTATTTTTAAAGATACGTGCTTGCACAAA-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGATCACTCTCCATCTTATTTATTTTTAAAGATACGTGCTTGCACAAATT  850

seq1  TTGCAGCTCATTGATTTAACTAGGCTGGCA-GGTTGGTGAGCTCTGAAAG  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGCAGCTCATTGATTTAACTAGGCTGGCAGGGTTGGTGAGCTCTGAAAG  900

seq1  TC-TTCCTGTGTGCATTGCTTAGTGCTCTTCAGCACTGAGCAACAGGCGT  947
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGTGTGCATTGCTTAGTGCTCTTCAGCACTGAGCAACAGGCGT  950

seq1  GCACTGTTGTATCCCATTTTTATATTGGTTCTTGTAATCTGAACTCAGGT  997
      ||||||||||||| || |||||||||||||||||||||||| ||||| ||
seq2  GCACTGTTGTATCTCA-TTTTATATTGGTTCTTGTAATCTGGACTCACGT  999

seq1  ACTAATGCT-GGTATAACT-GGTGTGCTACTAATGG-AACTTTCAGCCCC  1044
      ||||||||| ||||||||| || | ||||||||||| ||||| |||||||
seq2  ACTAATGCTGGGTATAACTGGGGGAGCTACTAATGGAAACTTCCAGCCCC  1049

seq1  ACTTTTCAGCCTTCTGTAAGTTTTCAGAAG-ATGCATAGTATTATAT-AT  1092
      || ||||||| |||||  |||||||||||| |||||  | ||| ||| ||
seq2  ACCTTTCAGCTTTCTG-GAGTTTTCAGAAGAATGCAATGGATT-TATAAT  1097

seq1  ATCCTATAAAAGTATAT  1109
      |||||||| | ||||||
seq2  ATCCTATAGAGGTATAT  1114


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