BAC Information

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BAC

Clone NameB6Ng01-346A05
Chromosome1 (Build37)18 (Build37)
Map Location 126,354,216 - 126,354,74985,298,741 - 85,299,256
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDpp10
Downstream geneLOC666998, Actr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346A05.bB6Ng01-346A05.g
ACCGA128035GA128036
length5281,140
definitionB6Ng01-346A05.b B6Ng01-346A05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,354,216 - 126,354,749)(85,298,741 - 85,299,256)
sequence
tcagagctgcggtgccatgatgctttatggtatcttctatcaaattacat
acttaaaaagcttcctttaagtagatttttgccaacctacaatctcatga
caggttctgttttaataattgtagggtagtgttaatgcacaaatttcagg
gtcaaacatctgaaaagctgaatatgaatttttcctatgtctttcattag
tttcttaatatatttggggtttaagtttaaacaactttcataaaggagca
aatttgagaagaaatgaagtgattaaatagactaaaaataataattaatt
aggaagacaataatccagtaagatttcttggtacagttattatctttatc
tatcattattattgtattattattattggcataattttaaaagtgtgttt
tattttctatcggatttatttattgcatgttcatgcctctatgtgtgttt
ccctatgtgtatgtgtgtctgtatgtctgtgtgtgccagggtgtgtccat
gtgtgtgtgtgtgtgtgtgtgtgtgtgt

gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaatattggacatagtactacttgaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggttcatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccccccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacga
aaggatggaccatctagagactgctatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacctagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacaggctcccaa
tggaggagctagaaaagtagccaaaagctaaagggatctgcaccctatag
gtggacacattatgaactacagtgccccgagctctgactctagctgcata
gtatcaagtgctagtcgcatcactgtaagagagtccatgactgcaactgt
atattgcccagtacaggatgcaagtcaaaaaaaaaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_126354216_126354749
seq2: B6Ng01-346A05.b_45_578 (reverse)

seq1  ACACACACACACACACACACACACACACATGGACACACCCTGGCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACATGGACACACCCTGGCACACAC  50

seq1  AGACATACAGACACACATACACATAGGGAAACACACATAGAGGCATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACAGACACACATACACATAGGGAAACACACATAGAGGCATGAAC  100

seq1  ATGCAATAAATAAATCCGATAGAAAATAAAACACACTTTTAAAATTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATAAATAAATCCGATAGAAAATAAAACACACTTTTAAAATTATGC  150

seq1  CAATAATAATAATACAATAATAATGATAGATAAAGATAATAACTGTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATAATAATACAATAATAATGATAGATAAAGATAATAACTGTACCA  200

seq1  AGAAATCTTACTGGATTATTGTCTTCCTAATTAATTATTATTTTTAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTTACTGGATTATTGTCTTCCTAATTAATTATTATTTTTAGTCT  250

seq1  ATTTAATCACTTCATTTCTTCTCAAATTTGCTCCTTTATGAAAGTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCACTTCATTTCTTCTCAAATTTGCTCCTTTATGAAAGTTGTTT  300

seq1  AAACTTAAACCCCAAATATATTAAGAAACTAATGAAAGACATAGGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAACCCCAAATATATTAAGAAACTAATGAAAGACATAGGAAAAA  350

seq1  TTCATATTCAGCTTTTCAGATGTTTGACCCTGAAATTTGTGCATTAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCAGCTTTTCAGATGTTTGACCCTGAAATTTGTGCATTAACAC  400

seq1  TACCCTACAATTATTAAAACAGAACCTGTCATGAGATTGTAGGTTGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTACAATTATTAAAACAGAACCTGTCATGAGATTGTAGGTTGGCAA  450

seq1  AAATCTACTTAAAGGAAGCTTTTTAAGTATGTAATTTGATAGAAGATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACTTAAAGGAAGCTTTTTAAGTATGTAATTTGATAGAAGATACC  500

seq1  ATAAAGCATCATGGCACCGCAGCTCTGAGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATCATGGCACCGCAGCTCTGAGAATTC  534


seq1: chr18_85298741_85299256
seq2: B6Ng01-346A05.g_850_1208

seq1  AGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACAC  50

seq1  TAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACT  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGCAAGATTTTATCGAAAGGACCTAGATGTAGCTGTCTCTTGTGAGACT  100

seq1  ATGCCGGGACCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGG  150
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  ATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGG  150

seq1  ATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGC  200
      |||||||||| |||||||||||||||||||||| |||||| ||||  |||
seq2  ATGGATCACA-GGCTCCCAATGGAGGAGCTAGA-AAAGTAGCCAA-AAGC  197

seq1  TAAAGGGATCTGCAACCCTATAGGTGGATCAACATTATGAACTAACCAGT  250
      ||||||||||||| ||||||||||||||   |||||||||||||  ||||
seq2  TAAAGGGATCTGC-ACCCTATAGGTGGA--CACATTATGAACTA--CAGT  242

seq1  ACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT  300
       |||| |||||| |||||||||||||||| |||||||     |  |||||
seq2  GCCCC-GAGCTC-TGACTCTAGCTGCATA-GTATCAA-----GTGCTAGT  284

seq1  CGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATATGCC  350
      ||  ||||||| | |||||| | ||||  ||| ||| |||| |||||  |
seq2  CG--CATCACT-GTAAGAGA-GTCCAT--GAC-TGC-AACTGTATATTGC  326

seq1  CCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTAGGTGGGTAGGGG  400
      ||||||||||   | || |  | ||||||     |  |            
seq2  CCAGTACAGG---ATGCAA--GTCAAAAAAAAAAATAA------------  359

seq1  AGTGGGGGTGGGTGGCTATGGGGGACTTTTGGTATAGCATTGGAAATGTA  450
                                                        
seq2  --------------------------------------------------  359

seq1  AATGAGCTAAATACCTAATAAAAAATGGAAACAAAAAAAAAAAAGAATGT  500
                                                        
seq2  --------------------------------------------------  359

seq1  CAAAAAAAAAAAATAA  516
                      
seq2  ----------------  359


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