BAC Information

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BAC

Clone NameB6Ng01-347N09
Chromosome18 (Build37)
Map Location 28,198,331 - 28,345,845
singlet/doubletdoublet
Overlap geneEG271505
Upstream geneEG665977, EG665646
Downstream geneEG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347N09.bB6Ng01-347N09.g
ACCGA129318GA129319
length1,144989
definitionB6Ng01-347N09.b B6Ng01-347N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,344,695 - 28,345,845)(28,198,331 - 28,199,216)
sequence
gaattctcagtgatcagcgcactgggaagtgcagtgcttgtaatatttgg
cgagtttgtgaaggccccaaggctgttgcagctcctcgacctgaccggtt
ggtcaatctcttaaagagcatcaccctggatgattccagtgctccacgtc
taattgttctttgtcagccaaggggaccagatagctcaataggatttggt
gcagaaagaaagatccatcaagctggtgtcattgactaaccacatccaca
aagcacatcattaatccactatagtcaagttgggggtattctggtgaagg
gttctgaataactcccgcttcattcctcacaaaatctggaatacttattc
tactgagcttttacaccagttttaacaccttcctcgtgttatgttaaaag
aaaaaataaataaataaatttaagaaaccattttaaaattaaaaaagaag
aagaaagaaaaaggcaggtaagattaaccaggagtcgcctgtctccttct
atcttgacaacccaagcaatatgcctaagctctgcctaatttccatatgg
aaacaattcttcatgaacttgacaaacaaagaacaacttccctgttccaa
ctaagttttactcatcccaccctcaggagaggagacaaagtctgtgcctg
tcatattttacatctgctctatactctacagtgatgttaaattaaaggtg
tatatcatggcagtttgcatatttatgctttactggcaaagaataacaag
ggagtgatgcctgcatataccagtgtccctcaataaccagagttcactgg
ttctaaaaacctctgtagacaccggaatatgtgactctcttgtgcaaaaa
gagattagatttgcatatcaaatattcatatcctcctctgtagtttaaat
aatctcttacagcatccaatgcaaagtaaacactgcctagatagtagcta
tactattttgttagaagtaggtaccaaaacataagaagtctgttcatgtt
caataaaggtacttttcttttttcattacagggttcctctgtgtagcctg
gctgtcttggactccactttgtagacagctccgcttgaactcagaatctg
ctgcctctgcctccgaggtgctgagaataaaggtgtgcgccacc

gaattctttctgtgtaaacctgaggacttgagtccacattctaaaactta
tcaagttagagtcatgcacatgtagccccaggactggggagtagagggca
gtactaggaggattactagtctccagtccagctccaggctcagtgagaga
ccttgcctcaaagcaaggtaaaaggtgttagaccaggatgcactaaatcc
tcctttggcctctgcagatgtgagtgagtacagggccacatatacatgta
tgtagttacattacacatataaacactcccatccaattagcacgtgatgt
ctgaacaacttaccatgctcaagttcatattcatattgatgaaatgttag
atgatttaattagatggatgaacttttcattcacacttttattttatttt
gaagattatcctgtaaacataccatttttcctttacttttcctcattcca
aattcttgaatgtacccctccaaacttgccttcaagttcatggctcccct
gctttttctacttattgctattctgtgcatatgtgcctatatacatgcat
atcaattatattcctagatatagtcaatttattacttgtggtgttacctg
tttgtatgttttctttctttctctctcctttgttttgtttttcgagacag
ggtttctctgtgtagccctggctgtcctggaactcactgtgtagaccagg
ctggcctcgaactcagaaatccacctgcttctgcctcccaagtgctgaga
ttaaaggcgtgcaccaccatcgccccgctgtttgtatgttttcaaggcta
atcatttggtactagacaacctattgttgtttcttccttggacaggacta
tctcttctgttcccagctttcttgagttgcatataatataatctaaaaaa
cttctatccttgtactcatagataactgtggtcttcacctctcatcaagg
aatcttttttttcatgcaacagatggagaccattacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28344695_28345845
seq2: B6Ng01-347N09.b_47_1190 (reverse)

seq1  GGTGGCGCACACCTTTAATCTCAGCACTCGGGAGGCAGAGGCAGGCAGAT  50
      ||||||||||||||||| |||||||||   ||||||||||||| ||||| 
seq2  GGTGGCGCACACCTTTATTCTCAGCACCTCGGAGGCAGAGGCA-GCAGA-  48

seq1  TTCTGAGTTCAAGGCGAGCCTGGTCTACAAAGTGAGTTCCAAGACAGCCA  100
      |||||||||||||  ||||   ||||||||||||   |||||||||||||
seq2  TTCTGAGTTCAAGCGGAGC--TGTCTACAAAGTGGAGTCCAAGACAGCCA  96

seq1  GGGCTACACAGAGGAACCCTGTAATGAAAAAAAGAAAAGTACCTTTATTG  150
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -GGCTACACAGAGGAACCCTGTAATG-AAAAAAGAAAAGTACCTTTATTG  144

seq1  AACATGAACAGACTTCTTATGTTTTGGTACCTACTTCTTAACAAAATAGT  200
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACATGAACAGACTTCTTATGTTTTGGTACCTACTTC-TAACAAAATAGT  193

seq1  ATAGCTACTATCTAGGCAGTGTTTACTTTGCATTGGATGCTGTAAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTACTATCTAGGCAGTGTTTACTTTGCATTGGATGCTGTAAGAGAT  243

seq1  TATTTAAACTACAGAGGAGGATATGAATATTTGATATGCAAATCTAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACTACAGAGGAGGATATGAATATTTGATATGCAAATCTAATCT  293

seq1  CTTTTTGCACAAGAGAGTCACATATTCCGGTGTCTACAGAGGTTTTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCACAAGAGAGTCACATATTCCGGTGTCTACAGAGGTTTTTAGA  343

seq1  ACCAGTGAACTCTGGTTATTGAGGGACACTGGTATATGCAGGCATCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGAACTCTGGTTATTGAGGGACACTGGTATATGCAGGCATCACTC  393

seq1  CCTTGTTATTCTTTGCCAGTAAAGCATAAATATGCAAACTGCCATGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTATTCTTTGCCAGTAAAGCATAAATATGCAAACTGCCATGATAT  443

seq1  ACACCTTTAATTTAACATCACTGTAGAGTATAGAGCAGATGTAAAATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTAATTTAACATCACTGTAGAGTATAGAGCAGATGTAAAATATG  493

seq1  ACAGGCACAGACTTTGTCTCCTCTCCTGAGGGTGGGATGAGTAAAACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACAGACTTTGTCTCCTCTCCTGAGGGTGGGATGAGTAAAACTTA  543

seq1  GTTGGAACAGGGAAGTTGTTCTTTGTTTGTCAAGTTCATGAAGAATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACAGGGAAGTTGTTCTTTGTTTGTCAAGTTCATGAAGAATTGTT  593

seq1  TCCATATGGAAATTAGGCAGAGCTTAGGCATATTGCTTGGGTTGTCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATGGAAATTAGGCAGAGCTTAGGCATATTGCTTGGGTTGTCAAGA  643

seq1  TAGAAGGAGACAGGCGACTCCTGGTTAATCTTACCTGCCTTTTTCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGACAGGCGACTCCTGGTTAATCTTACCTGCCTTTTTCTTTCT  693

seq1  TCTTCTTTTTTAATTTTAAAATGGTTTCTTAAATTTATTTATTTATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTTTAATTTTAAAATGGTTTCTTAAATTTATTTATTTATTTTT  743

seq1  TCTTTTAACATAACACGAGGAAGGTGTTAAAACTGGTGTAAAAGCTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAACATAACACGAGGAAGGTGTTAAAACTGGTGTAAAAGCTCAGT  793

seq1  AGAATAAGTATTCCAGATTTTGTGAGGAATGAAGCGGGAGTTATTCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGTATTCCAGATTTTGTGAGGAATGAAGCGGGAGTTATTCAGAA  843

seq1  CCCTTCACCAGAATACCCCCAACTTGACTATAGTGGATTAATGATGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACCAGAATACCCCCAACTTGACTATAGTGGATTAATGATGTGCT  893

seq1  TTGTGGATGTGGTTAGTCAATGACACCAGCTTGATGGATCTTTCTTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATGTGGTTAGTCAATGACACCAGCTTGATGGATCTTTCTTTCTG  943

seq1  CACCAAATCCTATTGAGCTATCTGGTCCCCTTGGCTGACAAAGAACAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATCCTATTGAGCTATCTGGTCCCCTTGGCTGACAAAGAACAATT  993

seq1  AGACGTGGAGCACTGGAATCATCCAGGGTGATGCTCTTTAAGAGATTGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGGAGCACTGGAATCATCCAGGGTGATGCTCTTTAAGAGATTGAC  1043

seq1  CAACCGGTCAGGTCGAGGAGCTGCAACAGCCTTGGGGCCTTCACAAACTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGGTCAGGTCGAGGAGCTGCAACAGCCTTGGGGCCTTCACAAACTC  1093

seq1  GCCAAATATTACAAGCACTGCACTTCCCAGTGCGCTGATCACTGAGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATATTACAAGCACTGCACTTCCCAGTGCGCTGATCACTGAGAATT  1143

seq1  C  1151
      |
seq2  C  1144


seq1: chr18_28198331_28199216
seq2: B6Ng01-347N09.g_67_952

seq1  GAATTCTTTCTGTGTAAACCTGAGGACTTGAGTCCACATTCTAAAACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTGTAAACCTGAGGACTTGAGTCCACATTCTAAAACTTA  50

seq1  TCAAGTTAGAGTCATGCACATGTAGCCCCAGGACTGGGGAGTAGAGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAGAGTCATGCACATGTAGCCCCAGGACTGGGGAGTAGAGGGCA  100

seq1  GTACTAGGAGGATTACTAGTCTCCAGTCCAGCTCCAGGCTCAGTGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGGAGGATTACTAGTCTCCAGTCCAGCTCCAGGCTCAGTGAGAGA  150

seq1  CCTTGCCTCAAAGCAAGGTAAAAGGTGTTAGACCAGGATGCACTAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTCAAAGCAAGGTAAAAGGTGTTAGACCAGGATGCACTAAATCC  200

seq1  TCCTTTGGCCTCTGCAGATGTGAGTGAGTACAGGGCCACATATACATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGCCTCTGCAGATGTGAGTGAGTACAGGGCCACATATACATGTA  250

seq1  TGTAGTTACATTACACATATAAACACTCCCATCCAATTAGCACGTGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTACATTACACATATAAACACTCCCATCCAATTAGCACGTGATGT  300

seq1  CTGAACAACTTACCATGCTCAAGTTCATATTCATATTGATGAAATGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAACTTACCATGCTCAAGTTCATATTCATATTGATGAAATGTTAG  350

seq1  ATGATTTAATTAGATGGATGAACTTTTCATTCACACTTTTATTTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAATTAGATGGATGAACTTTTCATTCACACTTTTATTTTATTTT  400

seq1  GAAGATTATCCTGTAAACATACCATTTTTCCTTTACTTTTCCTCATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTATCCTGTAAACATACCATTTTTCCTTTACTTTTCCTCATTCCA  450

seq1  AATTCTTGAATGTACCCCTCCAAACTTGCCTTCAAGTTCATGGCTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGAATGTACCCCTCCAAACTTGCCTTCAAGTTCATGGCTCCCCT  500

seq1  GCTTTTTCTACTTATTGCTATTCTGTGCATATGTGCCTATATACATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTACTTATTGCTATTCTGTGCATATGTGCCTATATACATGCAT  550

seq1  ATCAATTATATTCCTAGATATAGTCAATTTATTACTTGTGGTGTTACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTATATTCCTAGATATAGTCAATTTATTACTTGTGGTGTTACCTG  600

seq1  TTTGTATGTTTTCTTTCTTTCTCTCTCCTTTGTTTTGTTTTTCGAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGTTTTCTTTCTTTCTCTCTCCTTTGTTTTGTTTTTCGAGACAG  650

seq1  GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTGTGTAGACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTGTGTAGACCAGG  700

seq1  CTGGCCTCGAACTCAGAAATCCACCTGCTTCTGCCTCCCAAGTGCTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGAACTCAGAAATCCACCTGCTTCTGCCTCCCAAGTGCTGAGA  750

seq1  TTAAAGGCGTGCACCACCATCGCCCCGCTGTTTGTATGTTTTCAAGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCACCACCATCGCCCCGCTGTTTGTATGTTTTCAAGGCTA  800

seq1  ATCATTTGGTACTAGACAACCTATTGTTGTTTCTTCCTTGGACAGGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGGTACTAGACAACCTATTGTTGTTTCTTCCTTGGACAGGACTA  850

seq1  TCTCTTCTGTTCCCAGCTTTCTTGAGTTGCATATAA  886
      ||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGTTCCCAGCTTTCTTGAGTTGCATATAA  886


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