BAC Information

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BAC

Clone NameB6Ng01-347P03
Chromosome18 (Build37)
Map Location 24,104,163 - 24,209,680
singlet/doubletdoublet
Overlap geneEG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191
Upstream geneNol4, LOC100040579, LOC665797, Dtna, Mapre2
Downstream geneD030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347P03.bB6Ng01-347P03.g
ACCGA129392GA129393
length1,1191,153
definitionB6Ng01-347P03.b B6Ng01-347P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,208,553 - 24,209,680)(24,104,163 - 24,105,430)
sequence
gaattctggtttcaaggatgcacttgatgggagggcagaaggtcacggag
actgagcttccaaccccctccagctcacagtgctgcacatgctaagctcc
ccgcccccccccccccgccgtttacttctctcttctttctcatagagtga
tttattttaaacatgaaaaaagggattaaaagtaatttactagactataa
gatgctgagaatgacaagaaaatgtctgaaaaaaagagtctagcaatgtg
atggtggtgaggtagatcagaccaggttacaggaactggaacagtgggta
cggtaaaaatcaaagaagcaatagaatcatgaaggagaagcccaaccact
caaaagatggaacaagggcgaatggcatgaaaatggcatttcaggtcagt
ggaaggagacgattagtcaatgttaggacaatcatggtggctagggtcag
tggcagagagcttgttcagcatgcaggaagctctgagtccaagccccagc
cctgaaacaagcaaataagttgttttttagtttgttcttttttttaagat
ttatttatttattttatgtaagtacactgtagctgtcctcagacactcta
gaagagggagtcagatctcgttaaggatggttgtgagccaccatgtggtt
gctgggatttgaattctggaccttcggaagagcagtcgggtgctcttacc
cactgagccatctctccagcccagtttgttctttatatcaaagaatatta
cagttccaggacagccagggctatacagagaaaccctatctcgaaaaaaa
acaaaacaaaaacaaaaaacaaaacacaaaacaagaatattataagtaat
tataaagtgtttttcaattgtgttttaattatatatagtgggaaaagtac
ttcccagggaccccaataaactagaaactataaaagacatatagacacag
aaactaaatatatcagcctttaatttcacgagaaatactattgaaataaa
gggggtggctggagaaatgtcagtgggtaagaatatctatttgtccttgc
agagccatgtttgattgccagcgtcatcttggtggttcacaacacttcta
actcagtcaggggatctaa
gaattcctcagagaaggaatgctaagagataggaatgctaaagccctgct
tgacagaagcccagattaaaaaaacaaaaaaaaaacaaaaaaaaaaaaca
aaaaaaacaaacaaacaaacaaaaaaaaaacaggtcctatagctgaacta
gctggaggcatgggaggagaggaaaaagagaaatgactgtcttgggatgt
caaatggctgtcaccagcagaaagtgctagagtttgggaagggtagatag
tgaaaagccatgtgttcaagagtacaattcagggaagaagaaacagaatc
gcatccggtagacagtaaaataagtgggtattttgatctgtatgctttca
tcatttctaaaaatcacaccttagagtaaaatcagagccttaaaggaatc
cagtacaccaatatattttttttcaaaacactttaaaggtgcagcatatt
tagaaggagcaaaaatgtggccattttcgcttttgaagaggtaataacca
tcggctatataaaatgccacttaaacaaagcattatggctaatatacagc
ttgcttggcagggtgcatgcacaaggctctgggttcagccaccagcacct
catgaacagcctggtgaagcactcttgtaaccccaatactcagaaggtgg
agaggtcaaggtcatcctcaaagccaacctgtgtacctgagtcaaacaca
cttagaaagtgcaaagaaaactgtttttggctgaggcctaaagaaaactg
aatctgatcacctttatttggtcaatgggttcaatttcccatttaaaaaa
aaaaaaaagtttaaggccagcctgaatatatatagtgagtgagagccacc
cagagacacagaagcaagactctgattcaaaaacacaaagaatacatatt
ttaatacctcttttaagtactaggttaaactgcattcttacctcacctgg
aggtaagttctttaactattgctaaaatcaaacagagtatagttcccact
tgggtctagaagtcatgacccctattattttcacttagttcaaacaacag
ttcacatcctctgatcagggacagcagagaaacagattcttttcaatggt
acattggctttttaaagaagtcataaaggtagaaattcctgtgtcaaatc
aat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24208553_24209680
seq2: B6Ng01-347P03.b_46_1164 (reverse)

seq1  TTAGATCCCCTGGAACTGGAGTTAGGAGTGGTTGTGAACCACC-AGAGGG  49
      ||||||||||||  ||| ||||||| ||| ||||||||||||| ||| | 
seq2  TTAGATCCCCTG--ACT-GAGTTAGAAGT-GTTGTGAACCACCAAGATGA  46

seq1  CGCTGGCAATCAAACATGGGCTCTGCAA-GACAAATAGATATTCTTACCC  98
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CGCTGGCAATCAAACAT-GGCTCTGCAAGGACAAATAGATATTCTTACCC  95

seq1  ACTGACATTTCTCCAGCCACCCCCTTTAATTTTCAATAGTATTTCTCGTG  148
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ACTGACATTTCTCCAGCCACCCCCTTTA--TTTCAATAGTATTTCTCGTG  143

seq1  AAATTAAAGGCTGATATTATTTTAGTTTCTGTGTCTATATGTCTTTTATA  198
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  AAATTAAAGGCTGATAT--ATTTAGTTTCTGTGTCTATATGTCTTTTATA  191

seq1  GTTTCTAGTTTATTTGGGGTCCTTGGGAAGTACTTTTCCCACTATATATA  248
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  GTTTCTAGTTTA-TTGGGGTCCCTGGGAAGTACTTTTCCCACTATATATA  240

seq1  ATTAAAACACAATTGAAAAACACTTTATAATTACTTATAATATTCTTTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTAAAACACAATTGAAAAACACTTTATAATTACTTATAATATTC-TTGT  289

seq1  TTTGTGTTTTGTTTTTTGTTTTTGTTTTGTTTTTTTTCGAGATAGGGTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTTGTTTTTTGTTTTTGTTTTGTTTTTTTTCGAGATAGGGTTT  339

seq1  CTCTGTATAGCCCTGGCTGTCCTGGAACTGTAATATTCTTTGATATAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGGCTGTCCTGGAACTGTAATATTCTTTGATATAAAG  389

seq1  AACAAACTGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT  439

seq1  CTTCCGAAGGTCCAGAATTCAAATCCCAGCAACCACATGGTGGCTCACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGAAGGTCCAGAATTCAAATCCCAGCAACCACATGGTGGCTCACAA  489

seq1  CCATCCTTAACGAGATCTGACTCCCTCTTCTAGAGTGTCTGAGGACAGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTAACGAGATCTGACTCCCTCTTCTAGAGTGTCTGAGGACAGCT  539

seq1  ACAGTGTACTTACATAAAATAAATAAATAAATCTTAAAAAAAAGAACAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTACTTACATAAAATAAATAAATAAATCTTAAAAAAAAGAACAAA  589

seq1  CTAAAAAACAACTTATTTGCTTGTTTCAGGGCTGGGGCTTGGACTCAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAACAACTTATTTGCTTGTTTCAGGGCTGGGGCTTGGACTCAGAG  639

seq1  CTTCCTGCATGCTGAACAAGCTCTCTGCCACTGACCCTAGCCACCATGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCATGCTGAACAAGCTCTCTGCCACTGACCCTAGCCACCATGAT  689

seq1  TGTCCTAACATTGACTAATCGTCTCCTTCCACTGACCTGAAATGCCATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAACATTGACTAATCGTCTCCTTCCACTGACCTGAAATGCCATTT  739

seq1  TCATGCCATTCGCCCTTGTTCCATCTTTTGAGTGGTTGGGCTTCTCCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCATTCGCCCTTGTTCCATCTTTTGAGTGGTTGGGCTTCTCCTTC  789

seq1  ATGATTCTATTGCTTCTTTGATTTTTACCGTACCCACTGTTCCAGTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTATTGCTTCTTTGATTTTTACCGTACCCACTGTTCCAGTTCCT  839

seq1  GTAACCTGGTCTGATCTACCTCACCACCATCACATTGCTAGACTCTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTGGTCTGATCTACCTCACCACCATCACATTGCTAGACTCTTTTT  889

seq1  TTCAGACATTTTCTTGTCATTCTCAGCATCTTATAGTCTAGTAAATTACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACATTTTCTTGTCATTCTCAGCATCTTATAGTCTAGTAAATTACT  939

seq1  TTTAATCCCTTTTTTCATGTTTAAAATAAATCACTCTATGAGAAAGAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCTTTTTTCATGTTTAAAATAAATCACTCTATGAGAAAGAAGA  989

seq1  GAGAAGTAAACGGCGGGGGGGGGGGGGCGGGGAGCTTAGCATGTGCAGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAAACGGCGGGGGGGGGGGGGCGGGGAGCTTAGCATGTGCAGCA  1039

seq1  CTGTGAGCTGGAGGGGGTTGGAAGCTCAGTCTCCGTGACCTTCTGCCCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTGGAGGGGGTTGGAAGCTCAGTCTCCGTGACCTTCTGCCCTC  1089

seq1  CCATCAAGTGCATCCTTGAAACCAGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  CCATCAAGTGCATCCTTGAAACCAGAATTC  1119

seq1: chr18_24104163_24105430
seq2: B6Ng01-347P03.g_68_1220

seq1  GAATTCCTCAGAGAAGGAATGCTAAGAGATAGGAATGCTAAAGCCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAGAAGGAATGCTAAGAGATAGGAATGCTAAAGCCCTGCT  50

seq1  TGACAGAAGCCCAGATTAAAAAAACAAAAAAAAAACAAAAAAAAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAGCCCAGATTAAAAAAACAAAAAAAAAACAAAAAAAAAAAACA  100

seq1  AAAAAAACAAACAAACAAACAAAAAAAAAACAGGTCCTATAGCTGAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAACAAACAAACAAAAAAAAAACAGGTCCTATAGCTGAACTA  150

seq1  GCTGGAGGCATGGGAGGAGAGGAAAAAGAGAAATGACTGTCTTGGGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGCATGGGAGGAGAGGAAAAAGAGAAATGACTGTCTTGGGATGT  200

seq1  CAAATGGCTGTCACCAGCAGAAAGTGCTAGAGTTTGGGAAGGGTAGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCTGTCACCAGCAGAAAGTGCTAGAGTTTGGGAAGGGTAGATAG  250

seq1  TGAAAAGCCATGTGTTCAAGAGTACAATTCAGGGAAGAAGAAACAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCCATGTGTTCAAGAGTACAATTCAGGGAAGAAGAAACAGAATC  300

seq1  GCATCCGGTAGACAGTAAAATAAGTGGGTATTTTGATCTGTATGCTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCGGTAGACAGTAAAATAAGTGGGTATTTTGATCTGTATGCTTTCA  350

seq1  TCATTTCTAAAAATCACACCTTAGAGTAAAATCAGAGCCTTAAAGGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTAAAAATCACACCTTAGAGTAAAATCAGAGCCTTAAAGGAATC  400

seq1  CAGTACACCAATATATTTTTTTTCAAAACACTTTAAAGGTGCAGCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACACCAATATATTTTTTTTCAAAACACTTTAAAGGTGCAGCATATT  450

seq1  TAGAAGGAGCAAAAATGTGGCCATTTTCGCTTTTGAAGAGGTAATAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGCAAAAATGTGGCCATTTTCGCTTTTGAAGAGGTAATAACCA  500

seq1  TCGGCTATATAAAATGCCACTTAAACAAAGCATTATGGCTAATATACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTATATAAAATGCCACTTAAACAAAGCATTATGGCTAATATACAGC  550

seq1  TTGCTTGGCAGGGTGCATGCACAAGGCTCTGGGTTCAGCCACCAGCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGCAGGGTGCATGCACAAGGCTCTGGGTTCAGCCACCAGCACCT  600

seq1  CATGAACAGCCTGGTGAAGCACTCTTGTAACCCCAATACTCAGAAGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACAGCCTGGTGAAGCACTCTTGTAACCCCAATACTCAGAAGGTGG  650

seq1  AGAGGTCAAGGTCATCCTCAAAGCCAACCTGTGTACCTGAGTCAAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCAAGGTCATCCTCAAAGCCAACCTGTGTACCTGAGTCAAACACA  700

seq1  CTTAGAAAGTGCAAAGAAAACTGTTTTTGGCTGAGGCCTAAAGAAAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAGTGCAAAGAAAACTGTTTTTGGCTGAGGCCTAAAGAAAACTG  750

seq1  AATCTGATCACCTTTATTTGGTCAATGGGTTCAATTTCCCATTTAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATCACCTTTATTTGGTCAATGGGTTCAATTTCCCATTTAAAAAA  800

seq1  AAAAAAAAGTTTAAGGCCAGCCTGAATATATATAGTGAGTGAGAGCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTTTAAGGCCAGCCTGAATATATATAGTGAGTGAGAGCCACC  850

seq1  CAGAGACACAGAAGCAAGACTCTGATTCAAAAAACAACAAAGAATACAAT  900
      |||||||||||||||||||||||||||||||||   ||||||||||| ||
seq2  CAGAGACACAGAAGCAAGACTCTGATTCAAAAA--CACAAAGAATAC-AT  897

seq1  ATTTTAATACCTCTTTTAAAGTACTAGGTTAAACTGCATTCTTACCTCAA  950
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  ATTTTAATACCTCTTTT-AAGTACTAGGTTAAACTGCATTCTTACCTC-A  945

seq1  CCTGGAGGTAAGTTCTTTAACTTATTGCTAAAAATCAAACAGAGTTATAG  1000
      ||||||||||||||||||||| ||||||| |||||||||||||| |||||
seq2  CCTGGAGGTAAGTTCTTTAAC-TATTGCT-AAAATCAAACAGAG-TATAG  992

seq1  TTCCCACTTTGGTCTAAGAAGTCAATGACCCCTATTATTTTCAACTTAGT  1050
      ||||||||| ||||| ||||||| |||||||||||||||||| |||||||
seq2  TTCCCACTTGGGTCT-AGAAGTC-ATGACCCCTATTATTTTC-ACTTAGT  1039

seq1  TCAAACAACAG-TCACATCCTCTTGATCCAGGAACAGCAGAGAAACAGAT  1099
      ||||||||||| |||||||||| |||| |||| |||||||||||||||||
seq2  TCAAACAACAGTTCACATCCTC-TGAT-CAGGGACAGCAGAGAAACAGAT  1087

seq1  TCTTTTCCAATGGTACATTTGGCTTTTTAAAGAAGTCATAAAAGTTTAGA  1149
      |||||| |||||||||| |||||||||||||||||||||||| ||  | |
seq2  TCTTTT-CAATGGTACA-TTGGCTTTTTAAAGAAGTCATAAAGGTAGA-A  1134

seq1  ATATCTGTGT----TCAATCATACCATGGGGGTTGGGGAGGGCAGCAAGA  1195
      ||  ||||||    |||||                               
seq2  ATTCCTGTGTCAAATCAAT-------------------------------  1153

seq1  ATCTATAATTCAATCCCATGCTCCTATGATGATCCCTTTTGAAGGGTACT  1245
                                                        
seq2  --------------------------------------------------  1153

seq1  TTGATGACATATGTCAAATCAAT  1268
                             
seq2  -----------------------  1153