BAC Information

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BAC

Clone NameMSMg01-046J10
Chromosome18 (Build37)
Map Location 49,645,781 - 49,646,126
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046J10.T7 (MSMg01no046_j10.b1)MSMg01-046J10.TJ (MSMg01no046_j10.g1)
ACCAG276928AG276929
length755664
length of high quality
(start - end)
292 (105 - 396)346 (55 - 400)
definitionCHROMAT_FILE: MSMg01no046_j10.b1 PHD_FILE: MSMg01no046_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:47 2005CHROMAT_FILE: MSMg01no046_j10.g1 PHD_FILE: MSMg01no046_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCTTTTTCTTCTNTTTTTTTTTTTTCTTTCCTCCCTCCCTTTTCCTTTC
TTTTTTCCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGA
GGATCCGCGGAATTCAAATCTTGAGCATTCATATATATTTTAAAAAAGAG
CAAGGTATAGCTATATGTGTCTGTAACACCAGAATGACATCCCAGAGACA
GGCAGATCTCAAAAGGTTTACTGGCCAGCCAGCCCAGCCAAAATGCTGTA
TGTCAGGCATTTTGAGATCCTGAATCAAAGGAATAAAAGGCAGAGGGAGA
CATTGGATGTCCTCCTCTGGCCTCTTCACATACATACGTGGCCATATACA
CGTACCAATACAGCATACACATATTCAACACACACACACACACACACACA
CACACACACACACACACACATACACACACACTCTGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAAAGAGAGAGAAACCCAGTACCTCTTAGGCTTCTGCA
TGAAGTGCCTAAAGTAAAGATGAGACAGAGCGCCACTTATCCTAAAACTG
AAGCATGGGCCACTGCTGACCCCTTAAGGATCCAAGCTGGGTCAGAGGCC
AAAGCACTACTGGGATGATCCACAACATGCCAGTGAGCCTCTAGCTGTGT
CCCAGGGTCTGTTAACTTTGAGGGCAGGAGTTACTTTGTTATCACCTCCA
TTTCCGTAAACAAAAGAAAACGCTTTCGCCTTTTTCACCGATAACATCAC
AATCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTACTTCTGAGTACTTAAAGAAGAGCTTTATGGGTAAAAGTAAGA
GGATAAATTTGTGTTTAGATAGCTTCCTGGTCCCTAACGATGGATGGTCA
ACCATAGCATAGTACACAAATCCAGACATGCTTTCTTAGAGGGAGGTACT
GTCAGTCTCTCTTCAGGATCATGGTTATAGCTGCATTGTGATTGTGGAGA
GCCACAGAGCCTGGAGCTTGTAAGGAGTAGAGGTAGGAGCAGGAGTTAGG
AGACAGTGTAGCATCAGTGAGCTTCTGAGGAGATAGCTGTAGCATCAGTG
AACTGAGGAGAGAGCTGTAGTTTCAGTGAGCTTCTGAGGACAGAGCTGTA
TCATGAGTGAGCTTCTGAGGAGAGAGCTGTAGCATCAGTAAGCTTCTGAG
GAGATAGCTGTAGCATCAGTGAACTTCTGAGGATAGAGCTGTATCTTCAG
TGAGCTGCTGAGGAGAGAGTTGTAGCTTCAGTGAGCTTCTGAGGAGATAG
CTGTAGCATCATTGACCTGCTGAGGAGAGATCTGTAGCTTTAGTGAGCTT
CTGACGAGAGAGCTGTAGCATGAGTGATCTTCTGAGGAGAGATCTGTAAT
CATCTGTGATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_j10.g1 MSMg01no046_j10.g1 CHROMAT_FILE:
MSMg01no046_j10.g1 PHD_FILE: MSMg01no046_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:47 2005
         (346 letters)



>mm_chr18_49645581_49646326
          Length = 746

 Score =  629 bits (325), Expect = 0.0
 Identities = 341/349 (97%), Gaps = 6/349 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacttctgagtacttaaagaagagctttatgggtaaaagtaagaggataaatttgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttacttctgagtacttaaagaagagctttatgggtaaaagtaagaggataaatttgtgt 487

                                                                       
Query: 61  ttagatagcttcctggtccctaacgatggatggtcaaccatagcatagtacacaaatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttagatagcttcctggtccctaacgatggatggtcaaccatagcatagtacacaaatcca 427

                                                                       
Query: 121 gacatgctttcttagagggaggtactgtcagtctctcttcaggatcatggttatagctgc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gacatgctttcttagagggaagtactgtcagtctctcttcaggatcatggttatagctgc 367

                                                                       
Query: 181 attgtgattgtggagagccacagagcctggagcttgtaaggagtagaggtaggagcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attgtgattgtggagagccacagagcctggagcttgtaaggagtagaggtaggagcagga 307

                                                                       
Query: 241 gttaggagacagtgtagcatcagtgagcttctgaggagatagctgtagcatcagtgaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gttaggagacagtgtagcatcagtgagcttctgaggagatagctgtagcatcagtgaact 247

                                                            
Query: 301 gaggagagagctgtagtttca---gtgagcttctgaggacagagctgta 346
           ||||||||||||||||   ||   ||||||||||||||| |||||||||
Sbjct: 246 gaggagagagctgtag---catgggtgagcttctgaggagagagctgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)