Query= MSMg01no050_c07.b1 MSMg01no050_c07.b1 CHROMAT_FILE:
MSMg01no050_c07.b1 PHD_FILE: MSMg01no050_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:03 2005
(748 letters)
>mm_chr18_28344121_28345264
Length = 1144
Score = 1261 bits (652), Expect = 0.0
Identities = 714/748 (95%), Gaps = 25/748 (3%)
Strand = Plus / Plus
Query: 18 gaattctttcagtgtttgtttggacatttcttccttaatattaatgtttatttgatcttc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattctttcagtgtttgtttggatatttcttccttaatattaatgtttatttgatcttc 277
Query: 78 atcttcaagaaagaaacaacagaggcagtaattaagctcattcatgctcaccagcatgat 137
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 278 atcttcaagaaagaaacaacagaggcag----taagctcattcatgctcaccagcatgat 333
Query: 138 agcctctagagcagaacacatttccttataacggtgtttaattctatcaatgaacttgtt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agcctctagagcagaacacatttccttataacggtgtttaattctatcaatgaacttgtt 393
Query: 198 agaaattactaatacagtaggctgtcatcactgttcttttgactgtctctctctctctct 257
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 394 agaaattactaatacagtaggctgtcatcactgtccttttgactgtctctctctctctct 453
Query: 258 ------------ctctcacacacacacacacacaaaactgtggcttcaatatcagtgtac 305
| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cacccacccacacacacacacacacacacacacaaaactgtggcttcaatatcagtgtac 513
Query: 306 tcaatcagtcatgagaggaaattatctgaaatt---aaaaaaaaaaaatgtagccaggag 362
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 514 tcaatcagtcatgagaggaaattatctgaaattaaaaaaaaaaaaaaatgtagccaggcg 573
Query: 363 tggtggcgcacacctttaatctcagcactcaggaggcagaggcaggcagatttctgagtt 422
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 574 tggtggcgcacacctttaatctcagcactcgggaggcagaggcaggcagatttctgagtt 633
Query: 423 caaggccagcctggtctacaaagtgagttccaagacagccagggctacacagaggaaccc 482
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caaggcgagcctggtctacaaagtgagttccaagacagccagggctacacagaggaaccc 693
Query: 483 tgtcttgaa--aaaaaaaaaaaagtacctttattgaacatgaacagacttcttatgttct 540
||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 694 tgt----aatgaaaaaaagaaaagtacctttattgaacatgaacagacttcttatgtttt 749
Query: 541 ggtacctacttcttaacaaaatagtatagctactatctaggcagtgtttactttgcattg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggtacctacttcttaacaaaatagtatagctactatctaggcagtgtttactttgcattg 809
Query: 601 gatgctgtaagagattatttaaactacagaggaggatatgaatatttgatatgcaaatct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gatgctgtaagagattatttaaactacagaggaggatatgaatatttgatatgcaaatct 869
Query: 661 aatctctttttgcacaagagagtcacatattccggtgtctacagaggtttttagaaccag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aatctctttttgcacaagagagtcacatattccggtgtctacagaggtttttagaaccag 929
Query: 721 tgaactctggttattgagggacactggt 748
||||||||||||||||||||||||||||
Sbjct: 930 tgaactctggttattgagggacactggt 957
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1144
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1134
Effective search space: 836892
Effective search space used: 836892
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no050_c07.g1 MSMg01no050_c07.g1 CHROMAT_FILE:
MSMg01no050_c07.g1 PHD_FILE: MSMg01no050_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:03 2005
(687 letters)
>mm_chr18_28357592_28358678
Length = 1087
Score = 1230 bits (636), Expect = 0.0
Identities = 654/660 (99%), Gaps = 1/660 (0%)
Strand = Plus / Minus
Query: 3 atcttcatctgaaggtttctagtagaatgctggcttccagacagctaggatgagggtctt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 atcttcatctgaaggtttctagtagaatgctggcttccagacagctaggatgagggtctt 601
Query: 63 aaagcccataaccacagtgatgcacctacttgaacagggccacatcttctaatagccgca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aaagcccataaccacagtgatgcacctacttgaacagggccacatcttctaatagccgca 541
Query: 123 ctcgatgggctgagcatatacaaaccatcacagttctatttcttacccttggatgatact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctcgatgggctgagcatatacaaaccatcacagttctatttcttacccttggatgatact 481
Query: 183 ccacaatggtttgttccctactagctatctaaattctgtaatctttttcacattcaaaca 242
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 480 ccacaatggtttgttccctactagctatctaaattctgtaatttttttcacattcaaaca 421
Query: 243 tacatatctaaaatgtagaaactaacattcacacaaagaggaaacatgaaatatctgttg 302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tacatatttaaaatgtagaaactaacattcacacaaagaggaaacatgaaatatctgttg 361
Query: 303 ttatcagtgtcatagtgacacaaatgctatgaagtaaacaccaaa-ttttattattaatt 361
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 360 ttatcagtgtcatagtgacacaaatgctatgaagtaaacaccaaagttttattattaatt 301
Query: 362 ttaaagttcacttcatgagaaggaagccagagattgcaatgctaaattgaccaatacctg 421
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 300 ttaaagttcacttcatgagaaggaagccagagattgtaatgctaaattgaccaatacctg 241
Query: 422 ataatagataagttatggatccaagtgaaaaacctactactaattttctgttaaagaaac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ataatagataagttatggatccaagtgaaaaacctactactaattttctgttaaagaaac 181
Query: 482 atagtaataaaatgactcataataacatatttctgtacctataagttaatgtatcactta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atagtaataaaatgactcataataacatatttctgtacctataagttaatgtatcactta 121
Query: 542 atcttcataagagactttccttcttatagaatatgataataaacacagaggttcatgatt 601
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 120 atcttcataagagacttttcttcttatagaatgtgataataaacacagaggttcatgatt 61
Query: 602 ggacactgtgaagaaaaacagagacttcgatgtgcttagccataaatgggatgtctttat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 ggacactgtgaagaaaaacagagacttcgatgtgcttagccataaatgggatgtctttat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
