BAC Information

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BAC

Clone NameMSMg01-053O21
Chromosome18 (Build37)7 (Build37)
Map Location 18,673,954 - 18,674,25192,009,571 - 92,010,099
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053O21.T7 (MSMg01no053_o21.b1)MSMg01-053O21.TJ (MSMg01no053_o21.g1)
ACCAG282006AG282007
length716700
length of high quality
(start - end)		299 (67 - 365)533 (72 - 604)
definitionCHROMAT_FILE: MSMg01no053_o21.b1 PHD_FILE: MSMg01no053_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:59 2005CHROMAT_FILE: MSMg01no053_o21.g1 PHD_FILE: MSMg01no053_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:59 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,673,954 - 18,674,251)(92,009,571 - 92,010,099)
sequence
CACAATTTGCGGCCGTAAACGACTCCTATAGTTCGAGGATCCGCGGAATT
CTAGGTAGCTGTGCAAGTATGCACAAGACATAGGTAAACTCCAATTCAAA
AGCCACTGGTATGGAGTAGGAAAGAATGTAATAGCTTTCAATGACTAAAG
ACAGATGCTGAGAGAGGAAGAGAAAGGTTTTTCTTTTAAAGCTCTGTACC
CTCATATGTAGACCAAACTCCAGAAGAAAGCCATACTTCCATGCGTATTT
TACAGAAAAAAAATTGTATCTGATGAGCTGGACAGAGGGGCAGTGGGGAT
ACAGTTGATTGATTTAGGTGAACAGGATATGGAGGTAATTATGGAATGAG
AAAAGAGAGGGTGGCGAATATAAACCAAATGCCTTGTGCAATATTCTCAA
AGTACTAATTAAAAACTCCCACCAAATAACATTTGTCATAAACTAGTCTT
GTCTAGGGTTAATTTCTGCAATTTTATGCTGTTGTTAATATCATGCGTAT
ATTTTATGTTGACTAGATTAATCTATGATAGCCTTAGCATATTTTGGTCT
CTTCATATGTATTACTGTTCGACCCTTTTCTGGCATTCTTCTTCTTCTTC
TGACCTTTTCCCTCCTATTTTGTCTTTCTTTTGTCCTCTCATCTTTTTCT
CTTACCCAATTTCTTCGCTACACTGTCCCTTTTTCTATCCGATTTGCCCA
GCCCCCCTGACCCATC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAACTTTTCTCTGAGTGGGGCTTTTAGTT
GATATAAATCCCGTTCAAGTCAATTAGAAAAATCATCTATGTGTGGGCTT
TAAGGACATCATTGCCACACAGGAGATGGTTAGTAGGAAAGTAACTAATG
TGTTAAAGCAAGGAAGGCAAATTTATTATTTTGAGATATTCTCCTTATTC
ATTGAATATTTTATATTTTTATTGAATATTTTATTTATTTACATTTCAAA
TGTTAGCCCCTTTCCTGATTTCCCCTTCACAAACCCTATATATTATCCTC
CCTCCCCCTGCTTCTATGAGGGTGCTCACCTACCCAACCACACACTCCTG
GCAACCATCCCTGGCATTCCCCTACACTGGGGCATGGAGACTTCCTAGGA
TCAAGGACCTCTTCTCCCATTGATGTCTGACGAGGCCATCCTCTGCTACA
TATGTGGCCAGAGCCATGGGATTCTCTATGTGTACTCTTTGGTTGGTGAT
TTAGTTCCTGGTAGCTATGGAATGTCTGGTTGGTTGATGTTGTTCTTCCT
ATGGGTTGATAAATATTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCAATATTCCCCCCCCTCTCTCTTTCTTTCTTCCTCTCCTCCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_o21.b1 MSMg01no053_o21.b1 CHROMAT_FILE:
MSMg01no053_o21.b1 PHD_FILE: MSMg01no053_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:59 2005
         (299 letters)



>mm_chr18_18673754_18674452
          Length = 699

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatgcacaagacataggtaaactccaattcaaaagccactggtatggagtaggaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatgcacaagacataggtaaactccaattcaaaagccactggtatggagtaggaaagaa 260

                                                                       
Query: 61  tgtaatagctttcaatgactaaagacagatgctgagagaggaagagaaaggtttttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaatagctttcaatgactaaagacagatgctgagagaggaagagaaaggtttttcttt 320

                                                                       
Query: 121 taaagctctgtaccctcatatgtagaccaaactccagaagaaagccatacttccatgcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 taaagctctgtaccctcatatgtagaccaaactccagaagaaagccatacttccatgtgt 380

                                                                       
Query: 181 attttacagaaaaaaaattgtatctgatgagctggacagaggggcagtggggatacagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttacagaaaaaaaattgtatctgatgagctggacagaggggcagtggggatacagtt 440

                                                                     
Query: 241 gattgatttaggtgaacaggatatggaggtaattatggaatgagaaaagagagggtgg 298
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattgatttaggtgaacaggacatggaggtaattatggaatgagaaaagagagggtgg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no053_o21.g1 MSMg01no053_o21.g1 CHROMAT_FILE:
MSMg01no053_o21.g1 PHD_FILE: MSMg01no053_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:59 2005
         (533 letters)



>mm_chr7_92009371_92010303
          Length = 933

 Score =  969 bits (501), Expect = 0.0
 Identities = 522/529 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacttttctctgagtggggcttttagttgatataaatcccgttcaagtcaattagaaaa 60
           |||||||| ||||||||||||||  |||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaacttttttctgagtggggcttccagttgatataaatcccgtccaagtcaattagaaaa 260

                                                                       
Query: 61  atcatctatgtgtgggctttaaggacatcattgccacacaggagatggttagtaggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatctatgtgtgggctttaaggacatcattgccacacaggagatggttagtaggaaag 320

                                                                       
Query: 121 taactaatgtgttaaagcaaggaaggcaaatttattattttgagatattctccttattca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 taactaatgtgtttaagcaaggaaggcaaatttattattttgagatattctccttgttca 380

                                                                       
Query: 181 ttgaatattttatatttttattgaatattttatttatttacatttcaaatgttagcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaatattttatatttttattgaatattttatttatttacatttcaaatgttagcccct 440

                                                                       
Query: 241 ttcctgatttccccttcacaaaccctatatattatcctccctccccctgcttctatgagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctgatttccccttcacaaaccctatatattatcctccctccccctgcttctatgagg 500

                                                                       
Query: 301 gtgctcacctacccaaccacacactcctggcaaccatccctggcattcccctacactggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgctcacctacccaaccacacactcctggcaaccatccctggcattcccctacactggg 560

                                                                       
Query: 361 gcatggagacttcctaggatcaaggacctcttctcccattgatgtctgacgaggccatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatggagacttcctaggatcaaggacctcttctcccattgatgtctgacgaggccatcc 620

                                                                       
Query: 421 tctgctacatatgtggccagagccatgggattctctatgtgtactctttggttggtgatt 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgctgcatatgtggccagagccatgggattctctatgtgtactctttggttggtgatt 680

                                                            
Query: 481 tagttcctggtagctatggaatgtctggttggttgatgttgttcttcct 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagttcctggtagctatggaatgtctggttggttgatgttgttcttcct 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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