Query= MSMg01no054_j04.b1 MSMg01no054_j04.b1 CHROMAT_FILE:
MSMg01no054_j04.b1 PHD_FILE: MSMg01no054_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:47 2005
(647 letters)
>mm_chr18_21857282_21858328
Length = 1047
Score = 1185 bits (613), Expect = 0.0
Identities = 631/637 (99%)
Strand = Plus / Minus
Query: 11 gaattctagagcattctgttcaatccctaatgatcatcctcatggaaatagaggtaacag 70
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gaattctagagcattttgttcaatccctaatgatcatcctcatggaaatagaggtaacac 788
Query: 71 atctcagattccacctgacaatgctgacatttataaccaccagaaggtattaaagtaagg 130
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atctcagattccaactgacaatgctgacatttataaccaccagaaggtattaaagtaagg 728
Query: 131 tcccccactaagagggagcagggtttataacggtagcacagaagctaacacacataacag 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tcccccactaagagggagcagggtttataacggtagcacagaagctaacacacataacag 668
Query: 191 agatgataggagagcaaacccaccatttgtctgtcatctgagaagaagcaaaggggaggg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agatgataggagagcaaacccaccatttgtctgtcatctgagaagaagcaaaggggaggg 608
Query: 251 ttggcgttgtttaatttgagtcaagtatcagaaagtgaatttcagcgcagctcgtttgct 310
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 607 ttggcgttgtttaatttgagtcaagtatcagaaagtgaatttcagcgcagctcatttgct 548
Query: 311 tttattaccgagtacaccaggaaatcatgagaatgctttcgtttgcccgtgccggctgct 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tttattaccgagtacaccaggaaatcatgagaatgctttcgtttgcccgtgccggctgct 488
Query: 371 gccctgtttttggtcattcgattatttgatgtgacacccgccacacagaaaggttgtttc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gccctgtttttggtcattcgattatttgatgtgacacccgccacacagaaaggttgtttc 428
Query: 431 cttctgttcctgtctcagagctggtaggagaaacacggggagaaagattgcacagctggt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cttctgttcctgtctcagagctggtaggagaaacacggggagaaagattgcacagctggt 368
Query: 491 agtacagtgaacccgaaaatacacagaaccgtaccagagggaatagtcatcaacacgaag 550
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agtacagtgaacccaaaaatacacagaaccgtaccagagggaatagtcatcaacacgaag 308
Query: 551 caaacaggcacccaggctctcgattacaggaggctcacagagcaccaagtgctcctgcca 610
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 307 caaacaggcacccaggctctcgattacaggaggctcacagagcaccaagcgctcctgcca 248
Query: 611 actcctctctacccgtgcacggagctgcagacagcat 647
|||||||||||||||||||||||||||||||||||||
Sbjct: 247 actcctctctacccgtgcacggagctgcagacagcat 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_j04.g1 MSMg01no054_j04.g1 CHROMAT_FILE:
MSMg01no054_j04.g1 PHD_FILE: MSMg01no054_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:47 2005
(552 letters)
>mm_chr18_21795715_21796671
Length = 957
Score = 1004 bits (519), Expect = 0.0
Identities = 546/557 (98%), Gaps = 5/557 (0%)
Strand = Plus / Plus
Query: 1 aattgtgtctcctccaaattcagacagatacctaagtcctaaaccttaccgggactcact 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aattgtgtctcctccaaattcagacagatacctaagtcctaaaccttagtgggactcact 260
Query: 61 tgtctatgtaactttaaggaactaatcaggttaaataacttctacaggggaactctgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctatgtaactttaaggaactaatcaggttaaataacttctacaggggaactctgacc 320
Query: 121 taacagcactagtttctggtaagaagagaaggagacaggagaatgcataagacatggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacagcactagtttctggtaagaagagaaggagacaggagaatgcataagacatggagg 380
Query: 181 gaagaccatatacaggaagggggagaccttccatttaggcagaaaggcacacctacaaat 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagaccatacacaggaagggggagaccttccatttaggcagaaaggcacacctacaaat 440
Query: 241 agccctggcatttaaacatgcagcttccagtcacccaatctgtgatgacaagttatcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccctggcatttaaacatgcagcttccagtcacccaatctgtgatgacaagttatcaca 500
Query: 301 gaccaaatgggtacaagcatccctggcagaactgacacatacacacaaagggctgacaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccaaatgggtacaagcatccctggcagaactgacacatacacacaaagggctgacaag 560
Query: 361 gaccagtgagtgagtttcatgttcagttttgggaacagacatcagagaaggtcatcctga 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaccagtgagtgagtttcgtgttcagttttgggaacagacatcagagaaggtcatcctga 620
Query: 421 tgaggcttgtatggctgtcttgagaaagctcttgagttcacatatgatcactccatctta 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 tgaggcttgtatggctgtcttgagaaagctcgtgagttcacatatgatcactccatctta 680
Query: 481 tgacccagtgttgtgtcacct----gtgtatggagtgcctgtaatatgcaaaatcatggt 536
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 681 tgacccagtgttgtgtcacctaactgtgtatggagtgcctggaatatgcaaaatcatggt 740
Query: 537 -ccttagttcttctttg 552
||||||||||||||||
Sbjct: 741 tccttagttcttctttg 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 957
Length adjustment: 10
Effective length of query: 542
Effective length of database: 947
Effective search space: 513274
Effective search space used: 513274
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
