Query= MSMg01no056_h01.b1 MSMg01no056_h01.b1 CHROMAT_FILE:
MSMg01no056_h01.b1 PHD_FILE: MSMg01no056_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:06 2005
(300 letters)
>mm_chr18_60279586_60280285
Length = 700
Score = 379 bits (196), Expect = e-109
Identities = 220/228 (96%), Gaps = 2/228 (0%)
Strand = Plus / Plus
Query: 74 ttgatactttttcaaatcgtcttttattcatttgggtcttcccacgtttgctttaatcag 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgatactttttcaaatcgtcttttattcatttgggtcttcccacgtttgctttaatcag 333
Query: 134 tgttgtaaaggactgatg-aaactgctatgttttaagacccaattctttcttttgttgat 192
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||
Sbjct: 334 tgttgtaaaggactgatggaaa-tgctatgttttaagacgcaattctttctttcgttgat 392
Query: 193 tcctaaattttcccacaaacaactgttccacaaacttgcctcacaggccaatttgatgga 252
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcctaaattttcccttaaacaactgttccacaaacttgcctcacaggccaatttgatgga 452
Query: 253 cacatacttttcaattgaagttccattttcccagatgactctggcttg 300
||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cacattcttctcaattgaagttccattttcccagatgactctggcttg 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_h01.g1 MSMg01no056_h01.g1 CHROMAT_FILE:
MSMg01no056_h01.g1 PHD_FILE: MSMg01no056_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:06 2005
(393 letters)
>mm_chr18_60408192_60408984
Length = 793
Score = 745 bits (385), Expect = 0.0
Identities = 391/393 (99%)
Strand = Plus / Minus
Query: 1 gcctcaaactcagaaatcaacctacctctagctcccaagtgctgcgattaaaggtgtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gcctcaaactcagaaatcaacctacctctagctcccaagtgctgcgattaaaggtgtgta 609
Query: 61 ccatcacttcctggcacttggctttatttcttaaatggatcaggggttgtgtggtgattc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctatcacttcctggcacttggctttatttcttaaatggatcaggggttgtgtggtgattc 549
Query: 121 tcattagctatctcttttggcaagtctgtatctcaatttatgacaaaaatacattggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tcattagctatctcttttggcaagtctgtatctcaatttatgacaaaaatacattggagc 489
Query: 181 atttggtgtttgtgtgtggcctagctataagaaagcaactgaacaccagcataatttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atttggtgtttgtgtgtggcctagctataagaaagcaactgaacaccagcataatttgca 429
Query: 241 tagcctgttaaggtctgattgttcttcctttttaatgttaatatgttaatcctatgtaaa 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tagtctgttaaggtctgattgttcttcctttttaatgttaatatgttaatcctatgtaaa 369
Query: 301 tggcccaaaccttcagtgggatcctattaggaggaaatattttgggaggcatctgtgctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggcccaaaccttcagtgggatcctattaggaggaaatattttgggaggcatctgtgctt 309
Query: 361 gaaataggtcatgaaaatagagcccaaatgttg 393
|||||||||||||||||||||||||||||||||
Sbjct: 308 gaaataggtcatgaaaatagagcccaaatgttg 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
