BAC Information

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BAC

Clone NameMSMg01-056M13
Chromosome18 (Build37)
Map Location 29,396,969 - 29,478,550
singlet/doubletdoublet
Overlap geneLOC100040930
Upstream geneEG625997, BC051408
Downstream gene4930578E11Rik, LOC666073, Pik3c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056M13.T7 (MSMg01no056_m13.b1)MSMg01-056M13.TJ (MSMg01no056_m13.g1)
ACCAG284104AG284105
length706708
length of high quality
(start - end)
509 (71 - 579)418 (71 - 488)
definitionCHROMAT_FILE: MSMg01no056_m13.b1 PHD_FILE: MSMg01no056_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:32 2005CHROMAT_FILE: MSMg01no056_m13.g1 PHD_FILE: MSMg01no056_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,396,969 - 29,397,427)(29,478,133 - 29,478,550)
sequence
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAAGGATCCGCGG
AATTCAACATTGTTCCCCTGAAAAACTTGATAAATCATATAACATCAAAA
TCCTCTCACAAATTGAAGCATTCCACAAATGTTAATGTGTGTTGCTTTCC
ATTTGCCCATCCTTCTAATACACACATTACAAAGGAAAATAGTTGACACT
GTAATGAGCAAGAAAGGGGCTTGCAGGCACATTCTGAAAACATTATATTC
TAATTGATAACTGATAATTAAATTACAATTTTTCTTCATAAAATAAGTGC
TCATCACGGTGTTTAAGTATCCCAAATGACCAACTTGTCCATAAGTCAGT
TGGAGGAGACAAATCTCAGATGTTTTGATACTTTCAAACTTCAATATCTA
GGGCTATGCTTCACTTACAAGGAGAAAAACCAGGAGAAATTTATGCAAGA
GTCCATGCCTGTTGCCAGTCGTCACTGGAGGAGAGGGAATAGAAGGATTT
ATACATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TCATTTATTTTAGAGCTGCCCTATTGTTCCATTACGCCTGTAATGGCATT
GCAGATTTGAGTAGCAAACCTCCCAGAATTAAGGATAAACTTTCCTTGAA
CATCCACATTTGAAAACGAACCCAATGATAGTTTCCTAGCAAATCCTGGA
CAATCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCAGCGAAATTCATGCCTTCACTGACCTGCCAGCTTCT
ACTTCTATTCCAAAGCACTGGGAGATAGAAAGGAGGAGAATTGGGCTCCT
TCTGAATTGTCCTTCTGCTGTGTAAATGTTGACTGGGAAGCCTCCAGACT
CATTGTCATTAGCAATCTAAACACATTTGAAGAGTGGGATAGGGACTGGG
CAGCAGACGCACTGCTCATCATGGGTCAGCCACACTCCTGGTCATGGCTT
CCTGGCTGAGAAATAATCTACCTCCTGAGGAAGGGCTTGATCTGAGTGCA
CTAGGCTGATCGGCGTGGCTTTCAAGCTCTTAGTGTTCACCAGTTAGGGC
CAGCTCTGCACTGATTAATCACCAATGAGTGAGCCACTCATTACCACTTT
CTGTCCCCTTTCCAATTATTTTTGTCTGTATTTCAGCCTGCATCTTGCGT
TGTGTGTAGATAATAATGCCAGCTAATTTTGATAACAGTGAACCCAACCT
GGTTTTTAGTTGCTTATCAGATATTTTATACTTACTTATCCAGAAAACTA
AAATCTAATAGTTCAACTTGCCAAATTTGGAAAAGCAAGTTTTTTCACAG
AGAGTATTTATAAATAAGTTTTCCTTTGTACCATAAACGCGCCTACGGGC
CCTACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_m13.b1 MSMg01no056_m13.b1 CHROMAT_FILE:
MSMg01no056_m13.b1 PHD_FILE: MSMg01no056_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:32 2005
         (509 letters)



>mm_chr18_29396769_29397677
          Length = 909

 Score =  810 bits (419), Expect = 0.0
 Identities = 449/459 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaacttgataaatcatataacatcaaaatcctctcacaaattgaagcattccacaaat 60
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||
Sbjct: 201 aaaaacttgataaatcatataacattaaagtcctctcacaaattgaagcatttaacaaat 260

                                                                       
Query: 61  gttaatgtgtgttgctttccatttgcccatccttctaatacacacattacaaaggaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaatgtgtgttgctttccatttgcccatccttctaatacacacattacaaaggaaaat 320

                                                                       
Query: 121 agttgacactgtaatgagcaagaaaggggcttgcaggcacattctgaaaacattatattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttgacactgtaatgagcaagaaaggggcttgcaggcacattctgaaaacattatattc 380

                                                                       
Query: 181 taattgataactgataattaaattacaatttttcttcataaaataagtgctcatcacggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattgataactgataattaaattacaatttttcttcataaaataagtgctcatcacggt 440

                                                                       
Query: 241 gtttaagtatcccaaatgaccaacttgtccataagtcagttggaggagacaaatctcaga 300
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttaagtagcccaaataaccaacttgtccataagtcagttggaggagacaaatctcaga 500

                                                                       
Query: 301 tgttttgatactttcaaacttcaatatctagggctatgcttcacttacaaggagaaaaac 360
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tgttttgatagtttcaaacttcaatatctagggctatgcttcatttacaaggagaaaaac 560

                                                                       
Query: 361 caggagaaatttatgcaagagtccatgcctgttgccagtcgtcactggaggagagggaat 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggataaatttatgcaagagtccatgcctgttgccagtcgtcactggaggagagggaat 620

                                                  
Query: 421 agaaggatttatacatttatttatttatttatttattta 459
           |||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 agaaggatttatacctttatttatttatttatttattta 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no056_m13.g1 MSMg01no056_m13.g1 CHROMAT_FILE:
MSMg01no056_m13.g1 PHD_FILE: MSMg01no056_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:32 2005
         (418 letters)



>mm_chr18_29477933_29478750
          Length = 818

 Score =  731 bits (378), Expect = 0.0
 Identities = 408/418 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgccttcactgacctgccagcttctacttctattccaaagcactgggagatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 618 attcatgccttcactgacctgccagcttctacttctattccaaagcactaggagatagaa 559

                                                                       
Query: 61  aggaggagaattgggctccttctgaattgtccttctgctgtgtaaatgttgactgggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggaggagaattgggctccttctgaattgtccttctgctgtgtaaatgttgactgggaag 499

                                                                       
Query: 121 cctccagactcattgtcattagcaatctaaacacatttgaagagtgggatagggactggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cctccagactcattgtcattagcaatctaaacacatttgaagagtgggatagggactggg 439

                                                                       
Query: 181 cagcagacgcactgctcatcatgggtcagccacactcctggtcatggcttcctggctgag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagcagacgcactgctcagcatgggtcagccacactcctggtcatggcttcctggctgag 379

                                                                       
Query: 241 aaataatctacctcctgaggaagggcttgatctgagtgcactaggctgatcggcgtggct 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct: 378 aaataatcaacctcctgaggaagggcttgatctgagtgcactaggctgatcagtgtggtt 319

                                                                       
Query: 301 ttcaagctcttagtgttcaccagttagggccagctctgcactgattaatcaccaatgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 ttcaagctcttagtgttcaccagttagggccagctctgcactgattaatcaccaaggagt 259

                                                                     
Query: 361 gagccactcattaccactttctgtcccctttccaattatttttgtctgtatttcagcc 418
           ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 258 gagccactcgttaccactttctgccccctttccaattattttggtctgtatttcagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)