BAC Information

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BAC

Clone NameMSMg01-057N19
Chromosome18 (Build37)
Map Location 21,773,198 - 21,773,403
singlet/doubletsinglet
Overlap geneKlhl14
Upstream geneTtr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264
Downstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057N19.T7 (MSMg01no057_n19.b1)MSMg01-057N19.TJ (MSMg01no057_n19.g1)
ACCAG284915AG284916
length716713
length of high quality
(start - end)
326 (39 - 364)317 (70 - 386)
definitionCHROMAT_FILE: MSMg01no057_n19.b1 PHD_FILE: MSMg01no057_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:57 2005CHROMAT_FILE: MSMg01no057_n19.g1 PHD_FILE: MSMg01no057_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCTTT
GTTTTGCTCTGTACCCCATTTTTTAATAGGGTTATTTGGTTCTCTGGAGT
CCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATCGGAT
GTAGGATTGGAAAAGATCTTTTCCCAATCTGTTGGTTACCTGCCATTTTG
TCCTATTGACAGCGTCCTTTGCCTTACAGAAGCTTTGTAATTTTATGAGT
TCCCATTTGTCAATTCTTGATCTTAGAGCATAAGCTATTGTTGTTCTGCT
CAGGAAAATTTCCTCTGTGCTCATGTGCTTGAGGCTCTTCCTCACTTTCT
TTTCTATTAATTTCAGTGTGTCTGGTTTTATGTGGAGGTCCTTGATTCAC
TTGCACCCCACCTTTGTACAAGGAGATAAGAATGGAATGATTTGCATTCT
TCTGCATGCTAACTGCCAGTTGAACCAATACCATTTGTTGAAAATGCAGT
CTTTTTTCCACTGGATGGTTTTAGCTCCTTTATCCAAGATCAAGTGACTG
TACGTATGTGGGTTCATTTCTGGGTCTTCAATTCTATTCTCCTGAAAGAG
GAATACTCTTCCACTTCTGGTACGATTACTAGCTGTTACAACTACTCTGA
AAATCATTTTGGTTGTTCCTCATAGAATTGTGCATTGCATTATGGCACTA
CCCGTTTATCCCACTC
TGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACATACAGAGACCCTTTC
TTTACATATATAACCCAATGAGGGATATTTGTGGTTTTAAGTATGTAATT
CTTAGCAGCTTCTTTGAAGTATGTTTGTGGATTTTGGGGAACTTACAGGT
TTAGAAGGGACAGTGGTGTTATATGTTTCTATCCTATATGATTTACAATA
TCTGCATTTATTACGTTATGATACATTCTTTTCACTTGTAGATGACTTTA
TTTTTTTTAATATTTTTTTATTACGCATTTTCTTCAATTACATTTCCAAT
GCTATCCCAAAAGTCCCCCATACCCTCCCCCCTACTCTCCTACTCATCCA
TTCCCATCTTTTGTCCTTAGCTTTTCCCTGTACTGGGCCATATAAAGTTT
GTGTGCCCAATGGGCCTCTCTTTCCAGCGATTGGCTGACTAGGTCATCTT
CTGATACCTATGTAGCTAGAGTCATGAGCTCTGTGGTACTGGTTAGTTCA
TAATGTTGATGCACCTGCACGCTTTGTGATCTCTTTAGCTCCTTGGATAC
TTCTTTTAGTTTCTCATTTGGTGGGCCCTGTGAATTTTCCCATGTCTGAC
TGCGACCATTTCTTCTTTTGCTTGCTAGACTCCGGCCCACCCTCTCTAGA
GCAGCTCTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_n19.g1 MSMg01no057_n19.g1 CHROMAT_FILE:
MSMg01no057_n19.g1 PHD_FILE: MSMg01no057_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:57 2005
         (317 letters)



>mm_chr18_21772961_21773677
          Length = 717

 Score =  331 bits (171), Expect = 4e-95
 Identities = 200/215 (93%), Gaps = 11/215 (5%)
 Strand = Plus / Minus

                                                                       
Query: 93  ctttgaagtatgtttgtggattttggggaacttacaggtttagaagggacagtggtgtta 152
           ||||||||||||        ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 ctttgaagtatg--------ttttggggaacttacgggtttagaagggacagtggtgtta 392

                                                                       
Query: 153 tatgtttctatcctatatgatttacaatatctgcatttattacgttatgatacattcttt 212
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 391 tatgtttctatcctatatgatttacaatatctgcatttattaagttatgatacattcttt 332

                                                                       
Query: 213 tcacttgtagatgacttta--ttttttttaatatttttttattacgcattttcttcaatt 270
           |||||||||||||||||||  |||||||||||| |||||||||| | |||||||||||||
Sbjct: 331 tcacttgtagatgactttattttttttttaata-ttttttattatgtattttcttcaatt 273

                                              
Query: 271 acatttccaatgctatcccaaaagtcccccatacc 305
           |||||||||||||||||||||||||||||||||||
Sbjct: 272 acatttccaatgctatcccaaaagtcccccatacc 238


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)